EWM26658.1, cds4023 (CDS) Nannochloropsis gaditana

Overview
NameEWM26658.1
Unique Namecds4023
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:672961..673779 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26658.1
Producttriosephosphate isomerase
Orig transcript idgnl|cribi|Naga_100001g84.8169.mrna
GeneTPI
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:672961..673779 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
GO:0006096glycolytic process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004807triose-phosphate isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR022896TrioseP_Isoase_bac/euk
IPR020861Triosephosphate_isomerase_AS
IPR013785Aldolase_TIM
IPR000652Triosephosphate_isomerase
Homology
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|553186582|ref|XP_005854446.1| (triosephosphate isomerase (TIM) [Nannochloropsis gaditana CCMP526] >gi|422294612|gb|EKU21912.1| triosephosphate isomerase (TIM) [Nannochloropsis gaditana CCMP526] >gi|585108746|gb|EWM26658.1| triosephosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MSTSKAWAEYLARGVPPQKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVKSP 272
            MSTSKAWAEYLARGVPPQKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVKSP
Sbjct:    1 MSTSKAWAEYLARGVPPQKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVKSP 272          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|298712036|emb|CBJ32973.1| (Triosephosphate isomerase [Ectocarpus siliculosus])

HSP 1 Score: 302.368 bits (773), Expect = 3.536e-100
Identity = 149/253 (58.89%), Postives = 184/253 (72.73%), Query Frame = 0
Query:   19 KRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVL-SQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVK 270
            +++LIGGNWK NGT    A +V++LN+GG  P  AEVV+APP+  L  VKD +RPD+ VS QN     +PGA+TGEL A ++KDFG+ WVI GHSERR GFG  GES +++A K+KVA+D GL+V+ C+GE L  REA +T E+VL   + A    L   DWS+VV+AYEPVWAIGTG  A+P QAQEVH +IRA+V EKV    A  LRIIYGGSVK S+A  L   PDIDGFLVGGASL  DFV II+AV+
Sbjct:    3 RKFLIGGNWKCNGTRENVAALVEVLNEGGEFPDNAEVVVAPPSIFLQTVKDTIRPDIKVSTQNVGKNVRPGAYTGELCASMIKDFGVEWVITGHSERRVGFGCAGESSDLIAEKSKVALDCGLNVIMCIGESLAVREANQTLELVLEDHMAAFLKTLEEADWSRVVVAYEPVWAIGTGVTASPAQAQEVHSAIRAWVGEKVSPAVAESLRIIYGGSVKSSNAAELATCPDIDGFLVGGASLKPDFVDIIKAVE 255          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|873228794|emb|CEM14871.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 301.212 bits (770), Expect = 7.159e-99
Identity = 148/263 (56.27%), Postives = 189/263 (71.86%), Query Frame = 0
Query:   10 YLARGVPPQKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVKSP 272
            ++A  VP      IGGNWK NGT    A +VK+LN+GG  P + EVV+APPA  +GYV+D++R D++VS QN  L    GA+TGEL   ++KDFG+NW I GHSERREGFG  GES E+VA KTK A++ GL V+ CVGEK E+REAGKT +V+  Q+ A+ ++L+  DWS VV+AYEPVWAIGTG  ATP+QAQ+    IR ++ + +  + AA  RIIYGGSVK  +A  L  +PDIDGFLVGGASLTSDF+ II A  +P
Sbjct:   56 WMADRVP-----FIGGNWKCNGTKKSVADLVKLLNEGGNFPDKVEVVVAPPALHVGYVQDSIRKDISVSTQNVGLPKAYGAYTGELSGNMIKDFGVNWCITGHSERREGFGMAGESSELVAKKTKAALEQGLKVIPCVGEKKEEREAGKTMDVISEQMKALVAELSPSDWSNVVVAYEPVWAIGTGLTATPQQAQDTQADIRKWMADNISPEVAASTRIIYGGSVKAGNAAELFAEPDIDGFLVGGASLTSDFIAIINASTTP 313          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|219122872|ref|XP_002181761.1| (isomerase triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407037|gb|EEC46975.1| isomerase triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 280.796 bits (717), Expect = 1.398e-91
Identity = 134/250 (53.60%), Postives = 173/250 (69.20%), Query Frame = 0
Query:   18 QKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIR 267
            +++YL+ GNWK NGTLA    +VK  N+ G IP   EV I  P+  L  +  +LR D+ + AQ+  +  K GAFTGE+ A  +KD G +WVIIGHSERREGF  PGE+ ++ A KT+VA+DAGL VM C+GEK EQRE G T +V  SQL  +A+ L   DWS + IAYEPVWAIGTG  ATPE AQE H SIR ++ + V A  A  +RI YGGS+KG++A  L+ +PDIDG L+GGASLT+DF  ++ 
Sbjct:   15 ERKYLVAGNWKCNGTLASNEELVKTFNEAGPIPSNVEVAICCPSVYLPQLLSSLRDDIQIGAQDCGVNDKNGAFTGEIGAFQIKDIGCDWVIIGHSERREGFEMPGETPDLCAKKTRVAIDAGLKVMFCIGEKKEQREDGTTMDVCASQLEPLAAVLTESDWSSIAIAYEPVWAIGTGLTATPEMAQETHASIRDWISQNVSADVAGKVRIQYGGSMKGANAKDLLEQPDIDGGLIGGASLTADFFNVVN 264          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|224011591|ref|XP_002295570.1| (triose-phosphate isomerase [Thalassiosira pseudonana CCMP1335] >gi|209583601|gb|ACI64287.1| triose-phosphate isomerase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 280.411 bits (716), Expect = 2.698e-91
Identity = 144/264 (54.55%), Postives = 180/264 (68.18%), Query Frame = 0
Query:   12 ARGVPP---QKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVKSP 272
            ++G P    +++YLIGGNWK NGT+A    I+   N  G IP  AEVVI  PA  +     +LR D+ ++AQN +LT   GA+TGE+ A  LKD G+ WVI+GHSERREGFG  GE  E+VA KTK A++ GL VM C+GEK E+REAG T +V  SQL   A  L++EDW+ V IAYEPVWAIGTG  ATPE AQE H +IRA+V E VG   A  +RI YGGS+KG++A  L+ + DIDG L+GGASLT DF   +  V SP
Sbjct:   14 SKGTPAPEGERKYLIGGNWKCNGTIASLEKIISEFNAAGPIPANAEVVIGCPAMHIPIALMSLRDDIEIAAQNCSLT-GCGAYTGEIAASQLKDMGVTWVILGHSERREGFGMAGEDSELVAKKTKKAIEEGLKVMFCIGEKKEEREAGTTMDVCASQLKPAADILSKEDWANVSIAYEPVWAIGTGLTATPEMAQETHANIRAWVAENVGQDVADAVRIQYGGSMKGANAADLLAQADIDGGLIGGASLTMDFFNCVNGVPSP 276          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|1210511487|dbj|GAX29301.1| (triosephosphate isomerase [Fistulifera solaris])

HSP 1 Score: 275.789 bits (704), Expect = 1.382e-89
Identity = 140/252 (55.56%), Postives = 169/252 (67.06%), Query Frame = 0
Query:   18 QKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAV 269
            Q+ YLIGGNWK NGTLA+   ++   N+ G IP   EV I      L  +   LR D+AV AQ+ A+  KPGA+TGE+ A  LKD G  WVIIGHSERREGFG  GE  E+ A K KVAVDAGL VM  +GEK E+REAG T  V  SQL  +A  L   DW  + IAYEPVWAIGTG  ATPE AQE HE+IR +V + VGA  A  +RI YGGS+KG++A  L+ +PDIDG L+GGASL +DF  ++  V
Sbjct:   17 QRTYLIGGNWKCNGTLAENEALINTFNEAGPIPDNVEVAICCTYVHLPQLLATLREDIAVGAQDCAVYEKPGAYTGEVSAAQLKDLGCVWVIIGHSERREGFGMAGEPAELCAKKCKVAVDAGLKVMFAIGEKKEEREAGTTMAVCASQLEPLAKVLTAADWDNIAIAYEPVWAIGTGLTATPEMAQETHEAIRKWVADNVGADIAKKVRIQYGGSMKGANAQELLAQPDIDGGLIGGASLQADFFNVVNGV 268          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|1210531882|dbj|GAX09569.1| (triosephosphate isomerase [Fistulifera solaris])

HSP 1 Score: 275.789 bits (704), Expect = 2.338e-89
Identity = 140/252 (55.56%), Postives = 169/252 (67.06%), Query Frame = 0
Query:   18 QKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAV 269
            ++ YLIGGNWK NGTLA+   ++   N+ G IP   EV I      L  +   LR D+AV AQ+ A+  KPGA+TGE+ A  LKD G  WVIIGHSERREGFG  GE  E+ A K KVAVDAGL VM  +GEK E+REAG T  V  SQL  +A  L   DW  + IAYEPVWAIGTG  ATPE AQE HE+IR +V + VGA  A  LRI YGGS+KG++A  L+ +PDIDG L+GGASL +DF  ++  V
Sbjct:   28 ERTYLIGGNWKCNGTLAENEALISTFNEAGPIPDNVEVAICCTYVHLPQLLATLREDIAVGAQDCAVYEKPGAYTGEVSAAQLKDLGCVWVIIGHSERREGFGMAGEPAELCAKKCKVAVDAGLKVMFAIGEKKEEREAGTTMAVCASQLEPLAKVLTAADWDNIAIAYEPVWAIGTGLTATPEMAQETHEAIRKWVADNVGADIAKKLRIQYGGSMKGANAQELLAQPDIDGGLIGGASLQADFFNVVNGV 279          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|732855179|gb|KHJ85713.1| (triose-phosphate isomerase [Oesophagostomum dentatum])

HSP 1 Score: 273.478 bits (698), Expect = 5.649e-89
Identity = 142/252 (56.35%), Postives = 175/252 (69.44%), Query Frame = 0
Query:   19 KRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVK 270
            +++ +GGNWK NG+ +   GI   LNQ   +P + EVV+APPA  L YVKD L+  V VSAQN     K GAFTGE+   +LKD G++WVIIGHSERR  FG   ESD++VA K   A++  ++V+ C+GEK+E+REAGKT EV   Q+ A+  K  + DW+ +VIAYEPVWAIGTGK ATPEQAQEVH  IR F+KEKV A  A   RIIYGGSV   +   L  KPDIDGFLVGGASL  DF+ I+ A K
Sbjct:    3 RKFFVGGNWKMNGSKSSIDGICVFLNQSAGVP-DVEVVVAPPAPYLTYVKDQLKNSVKVSAQNCYKVPK-GAFTGEISPEMLKDLGIDWVIIGHSERRHIFG---ESDQLVAEKVVHALECKVNVIFCIGEKIEEREAGKTKEVNFRQMQALIDK--KVDWTNIVIAYEPVWAIGTGKTATPEQAQEVHNWIREFLKEKVSADVAQKTRIIYGGSVTAENCVELGKKPDIDGFLVGGASLKPDFIKIVNARK 247          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|510860523|gb|EPB75980.1| (triose-phosphate isomerase [Ancylostoma ceylanicum])

HSP 1 Score: 271.166 bits (692), Expect = 7.559e-88
Identity = 141/252 (55.95%), Postives = 176/252 (69.84%), Query Frame = 0
Query:   19 KRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVK 270
            +++ +GGNWK NG  +   GI   LNQ   +P + +V++APPA  L YVKD+L+  V VSAQN     K GAFTGE+   +LKD G+ WVI+GHSERR  FG   ESD+++A KT  A++  ++V+ CVGEKLE+REAGKT EV   QL A+  K  + DW+ +VIAYEPVWAIGTGK ATP+QAQEVH  IR F+K+KV A  AA  RIIYGGSV   +   L  KPDIDGFLVGGASL  DF+ I+ A K
Sbjct:   20 RKFFVGGNWKMNGDKSSIDGICVFLNQSAGVP-DVDVIVAPPAPYLTYVKDHLKNSVKVSAQNCYKVPK-GAFTGEVSPSMLKDLGIEWVILGHSERRHIFG---ESDQLIAEKTVHALENKINVIFCVGEKLEEREAGKTKEVNFRQLQALVDK--KVDWTNIVIAYEPVWAIGTGKTATPDQAQEVHLWIREFLKDKVSADVAAKTRIIYGGSVTAENCVELGKKPDIDGFLVGGASLKPDFIKIVNARK 264          
BLAST of EWM26658.1 vs. NCBI_GenBank
Match: gi|762143735|ref|XP_011455124.1| (PREDICTED: triosephosphate isomerase [Crassostrea gigas])

HSP 1 Score: 268.855 bits (686), Expect = 4.404e-87
Identity = 134/251 (53.39%), Postives = 168/251 (66.93%), Query Frame = 0
Query:   18 QKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRA 268
             +++ +GGNWK NG      GI   L  G   P   EVV++PPA  LGY +  + P + V+AQN       GAFTG++ A ++KD G  WVI+GHSERR  FG   ESD+++  KTK A+  G+ V+AC+GEKLE+REAGKT EVV  Q  AI   +  + W  VV+AYEPVWAIGTGK ATPEQAQEVHE +RA++ E+V  + AA +RIIYGGSV   +   L  KPDIDGFLVGGASL  DFV I+ A
Sbjct:    3 NRKFFVGGNWKMNGNKQSIDGIADFLKTGPLDP-NTEVVVSPPACYLGYTRQKVDPKIGVAAQN-CYKVSSGAFTGDISADMIKDLGCEWVILGHSERRNVFG---ESDQLIGEKTKYALSKGMKVIACIGEKLEEREAGKTEEVVFRQTQAIIENITADQWPNVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWLAERVSKEVAASVRIIYGGSVNAGNCKDLGAKPDIDGFLVGGASLKPDFVQIVNA 248          
The following BLAST results are available for this feature:
BLAST of EWM26658.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553186582|ref|XP_005854446.1|0.000e+0100.00triosephosphate isomerase (TIM) [Nannochloropsis g... [more]
gi|298712036|emb|CBJ32973.1|3.536e-10058.89Triosephosphate isomerase [Ectocarpus siliculosus][more]
gi|873228794|emb|CEM14871.1|7.159e-9956.27unnamed protein product [Vitrella brassicaformis C... [more]
gi|219122872|ref|XP_002181761.1|1.398e-9153.60isomerase triosephosphate isomerase [Phaeodactylum... [more]
gi|224011591|ref|XP_002295570.1|2.698e-9154.55triose-phosphate isomerase [Thalassiosira pseudona... [more]
gi|1210511487|dbj|GAX29301.1|1.382e-8955.56triosephosphate isomerase [Fistulifera solaris][more]
gi|1210531882|dbj|GAX09569.1|2.338e-8955.56triosephosphate isomerase [Fistulifera solaris][more]
gi|732855179|gb|KHJ85713.1|5.649e-8956.35triose-phosphate isomerase [Oesophagostomum dentat... [more]
gi|510860523|gb|EPB75980.1|7.559e-8855.95triose-phosphate isomerase [Ancylostoma ceylanicum... [more]
gi|762143735|ref|XP_011455124.1|4.404e-8753.39PREDICTED: triosephosphate isomerase [Crassostrea ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4033rna4033Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications