rna3859, rna3859 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3859
Unique Name	rna3859
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3366
Alignment location	CM002462.1:261372..263150 +

Link to JBrowse

Properties


Property Name	Value
Product	Aminoacyl-tRNA synthetase, class I, conserved site
Orig transcript id	gnl\|cribi\|Naga_100018g48.2778.mrna
Orig protein id	gnl\|cribi\|Naga_100018g48.2778
Gene	GTS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:261372..263150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
GTS	gene3713	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3859	rna3859-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26798.1	cds3850	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:261372..263150+
coding sequence from alignment at CM002462.1:261372..263150+

mRNA sequence

>rna3859 ID=rna3859|Name=rna3859|organism=Nannochloropsis gaditana|type=mRNA|length=3366bp
ATGATCTGGGCACGGCGTTTGCTACAGTCTCCTCAGTGGCATCGAGGTTC
TTGGCACCGGAACCTTTTTTATCCCCTATCTCGGCTGGCCTTCACGTCAG
CGGCCGGGAATCCGTCTCCCGAAGCTGCCACGCATCCCCATCAATATCCC
TTAAAGAAGTGCCGTAACATTGGAATAATTGCACATATCGACGCTGGCAA
AACTACCACCACGGAACGTATCCTCTATTTGGCCGGGGAAACGGGCCATG
TTGGTGACGTGGACACAGGCGATACGGTCATGGATTTTTTGCCCCAGGAA
CGCGAGCGAGGCATAACCATCCAATCCGCTGCCATTTCTTTAGACTGGCA
CGATACCCGCATCAACATCATCGACACCCCGGGCCACGTAGACTTTACCA
TGGAAGTGGAACGGGCCGTGCGCGTCTTGGACGGTGCGGCTGTGGTAGTG
GATGCCGTGGCGGGGGTTCAGGCACAGACAGAAACCGTCTGGAGACAAGC
ACGCAAATATAAGGTGCCGACGATTGCCTTCGTCAACAAAATGGATCGGG
ACGGTGCTGATTTCCCACGGGCCGTTCAATCTCTGCGTCGACGACTGGGC
GCACCAGCCGTGCCCGTCCAGCTTCCCCTCGGTGCAGGCGGCGACTTCCA
GGGAGTGGTGGATTTACTTACCATGGAGGAGGTGGTATGGGAGGCTCCCC
AGACGTCCGGGAAGAATCCGTCTCCGCTGACGCCTTCCGCGCCGAAATCC
AAGCGGCGTAGCGTCTGTTTGACACGGCGGCCGCTGGCGGGGGGGGACAA
GACGAAGGAGGAGAGGCTGATGGCAGCCCGGGAGGCACGCGTCGCCTTGC
TCGAAGCCCTAGCGGATGCGGACGAGACCTTCATGGAGACGTACCTGGAA
AGATTGGACGAGGCGGGGGAAGAGGGGCTGGGAGGGACGGAGCAACTCCC
TCTGGTTACCGTCTTGGCCGCCATCCGTCGGGCCAGCCTGGCGGGTCTCC
TCGTCCCCACGCTCTGCGGCGCCTCTCTGAAGGGGAAGGGGGTGGAACCT
TTGCTCGATTCCATCGCCGCCTTTTGCCCCTCCCCCTTAGACCGAGACCC
TCTGGTCGCCCATCCCAAGCGGGCATTGGCCGGGAGCCACCAGCCGCACA
CGGGCAAGAAATTTGTCATCCACCCCCAGGACCCCAATCTCTGCGCCTAC
GCTTTCAAGGTCACGCACCACCCGCAGCGGGGACTGATTGTCTACTGCCG
CGTGTATTCTGGCACCCTCCACGCCAAGGAGAACCTGCAGAATTCCACGC
GGGACGTACGGGAGCGGCCGTTGCACCTGATGGAGGTGCGGGCGGGAGAC
TTGAGTCCCGTGGAGAGGGTAGGGGCGGGGCAGATCGTGGCCGTCATCGG
CTTGAAAGGCACGTTCACGGGCGATACCCTGGTTGCCTACAAGGGGCCCT
TGCACGGGGCGGTCCTGGAGGGTATGGTCGTTCCCGCGCCCGTCTTTGCC
TTGGCCGTAGAGCCTGTGAGCAGTGCGAAGCAAGGGGCTCTGGAAGAGGC
GTTGCGGATCTTGGAGCGGGAGGACCCGAGCTTGCAGGTAGGTCGAGACG
AGGAAAGCGGGCAATTGCTCCTGCGGGGGGTGGGGGAGCTGCACCTGGAA
ATCGTGTGCGACAAGTTGCGGCGACAGTACAATGTGGAGGTGGAAACGGG
CCAAGCCTATGTGGCCTATAGGGAGGGGATTCTGGACGCGAAGGAGAGAG
GGGGCGAGGGAGGGCCTCCATCTGTGACGACAACCTACGATCGGATGGTG
GGGTCCAGGCGCCTGTTTGCCGCCCTGGAGATACAACTAGAGCCCCTGTC
TGTCGGTGAAGGCCGTGAATCCATGGCGCATGAGGCAGACATGGGAGCGA
TGGCACCGAGTGGGCAAGGTAAGGTGGCAAAGGCAGCCTCCACTGTTTCT
GAGAGTGCCGCTCCCGTCATCCTTTTCAGCCCCGACGCTGTGGGAGTACT
GTCTGCCGAGGAGCGAGAGGCCTTGGTGAGTGGATTGGATGGAGCCTGTC
AGCGAGGACCCTTGGCGGGGTATCCGGTCACGGGATTCAATATACGGGTT
CTACGGGTGGTGAAAGACGCCGACACCACACCAGGGGCCTTGCGTGCCTG
CTCCGTGGCCAGCTTAGCGGCAAGCATGCAGGCAGCACGGGCAGTGGTGC
TGGAGCCGGTGATGAAAGTGGAAATTTATGCGCCTGAAGCGTCGTTTGGG
GCTGTGCTGTCGGATTTGACGGTGGCGCGTCGAGGAATCGTGCGTGAAGT
CGACGGACAGCTAGAGGCCTCACAGGTGGGCACGACCGTCACGGCTGGCA
AACATGTGATCCACGCTGATGTCCCGTTAGCGGCCTTGTTGGGATATTCG
ACGGCATTGAGGTCCATCACACAGGGGGAAGGCGGCTTTAGTATGGAATT
TTCGCACTACGCTCCTTCAACCTCGAGCTCCGTGGGGGGCGGTCGGGAAG
GCCATGTCGGCAGGTTCAAGACCATGGCGGTCCGGGAGGAATCGGGAGGG
GGCGGCTTGAACGGTGTGCTGGGGGAGATCGACGCGACCTTGGGCGGTGA
TGTAGACGCATCCAATCTGGTACCTACGACGTCCATGGGAGAGGCAAGCT
TGACAGATCTGCTGCAGGATTTGTTGACGGAGGATCAACGCGAAGGGGAG
GAGAGGAGGGTTTCTGACAGGGGGTCCAGAAGCGCTGCCGACGAGAATCT
GTCTGCAAGAGCAGAGACAAGTACCTTGGACGATCTCTTGAAGGAAACCG
GGCTGGACGATAGGGCTGAGGATTTCGAAGATATTTTTGGCAGCGCATGT
GTGAACGCAGGTGGCTGTAGTGCGGGAGGCGGTGCCAGGAGCAGTGTGGA
GGTCGGTGAGACTGCTGCGTCGTCCCGCATGGGCGTCGGGAAAGAGGACT
CGGCGGCGCGGACATGGCGGGACTTGGATGCAGCTGAAAGACAAGACTTC
TTGAAGTGGCTGGAAGAGGATGATTGTACGCAAGGCTTAGAGGCACCTTT
CCAAGTGCCGACCCGAACCCCCCCCATCGATGGCCTCAAGGACGAGTCTG
TCGCCCATACCTCTGCTGCTGCGCTCCCATCTCCGCTGCCGGTATCATCA
CCTGGTGAGTCAAGGGCAGGGAGCGTCGGGATCTCTTGCTCATTCGAGCA
GACAGCCGTTGGCGTCTCCTTAGCGTGTCCTGCCTCTGCCTCTTCGGCCG
TCACCCTTCCTAGCACGCCTAAGGACACCTTAGCGATGATTCGCGCCATG
TTGGGAATCGAACACAAGGAGGAGGGAAGCTTAGACGGCGGGTATGGCGG
TAATGAAGAGATGTGA

protein sequence of rna3859

>rna3859-protein ID=rna3859-protein|Name=rna3859|organism=Nannochloropsis gaditana|type=polypeptide|length=592bp
MKVIAFMTLTVTGLISCCSGRALASITYAAGRRQNIAGFLGRARISTFRS
PTSTKQPLQQIDQPKSSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGA
RTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWD
EGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQA
AEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAV
RGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLT
NTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGF
LPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLR
WVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSM
ELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANE
MPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGE
QIRMLHLAETGATSVVDLPTRIEKLREILRKAPVEAKEPVAG

mRNA from alignment at CM002462.1:261372..263150+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3859 ID=rna3859|Name=rna3859|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp|location=Sequence derived from alignment at CM002462.1:261372..263150+ (Nannochloropsis gaditana)
ATGAAGGTGATTGCATTCATGACTTTAACCGTGACGGGTCTCATTTCTTG
CTGCTCAGGCCGCGCATTAGCCAGCATCACCTATGCTGCCGGTAGAAGGC
AAAACATTGCTGGCTTTCTAGGGAGGGCCCGAATTAGCACATTCCGATCA
CCAACGAGTACTAAGCAGCCTTTACAGCAGATTGATCAGCCAAAAAGCTC
ACCCGATGCCTTGTTTGCCCGCCGCATGTCCACGTTGATGGCGGCTGTGA
GGGTCCGTTTCGCGCCTTCACCTACTGGGACGTTGCATGTGGGAGGAGCT
CGCACGGCATTGTACAATTATCTGGTAGCCAGGCAACATAAGGACGGCGT
CTTCGTTCTCCGCATCGAAGATACGGACACGGCAAGGTCCACGCGGGAAT
CCGAGGAGAGCATGTTGGCAGATTTGCGTTTTTTGGGGCTGGACTGGGAC
GAAGGGCCGGATAAACCGGGCGCGGTGGGACCGTACCGTCAATCAGAACG
CATTGACGTCTACAAGAAAGTGGCGCAGCAACTATTGGAGTCCGGAGATG
CTTACCCTTGTTTTTGCACggaagaagagctggaggccaagcggcaggcg
gcggaggcggccgggaAACCTCCTCAATACGACAGAACGTGGCGAGACGC
GGACCCGGCACTGGTAAAGGAGAAGATTGAGGCAGGAGAGCCGTATACTG
TCCGGTTCAAGGTAGCCCCGGGCAGGCGGGTGGAGATTGATGACGCGGTG
CGTGGTACTGTGGGATGGGACGCAGACGCGACGGTGGGGgacttcatcct
ccttcggTCGAGCGGGATGCCTGTCTATAATTTCTGCGTGGCCGTGGATG
ATGCCTTGATGGGTATCACCACCGTGATTCGCGCGGAGGAACACCTGACC
AACACATTGCGGCAGTGTTTGATTTTGGAGGCGCTCAAGTACCCCGCACC
CAAGTACGCCCATTGTTCGCTCATTCTCGGGGAGGATCGGTCCAAGCTCT
CCAAGCGGCACGGGGCAACCTCGGTGGATCAGTTCCGGGCCCAGGGTTTC
CTGCCTGACGCCATGTTGAACTATCTGGCCCTGCTGGGTTGGAACGATGG
GACCGAGCAGGAGGTGTTCTCCAGACAGGAGCTGATCGACCGGTTTTCCT
TGAATCGGGTAGTGAAAAGCCCCTCTGTCTTTGACATGGCCAAGTTGCGG
TGGGTGAATGGGCAGCATCTGAGGGCCTTGCCGGACGAGAACTTGGTGCC
ATTGGTAGGGGCgtgcttggaggaggaagggatggtcaAGGTTGGGGCCG
AAGGCGCGGCTTTTGTGTCCTACGCTACTCAGGTGGCGAAGGGCTCCATG
GAATTGGTGAACGATGCGGCGACTATTGTCGGTGATGTCTTGACGTACCC
CTTGGAAGAAACCTTGGCGTCTGGGGAGGCGGATGCCTTGGTAGCAGAAG
GCTTGTGGGAGATGGCCAGGGAAGTGGTGAGTGCGTTCGAAGCGAACGAG
ATGccgcgaggaaaggaagaagatttTGCCGCGTTATGGAAGGCGTGGGT
GAAAGCTGTTGGTAAGaaaatggggaggaaaggaaagcagctCTTTCACC
CTATCCGCCTCGCATTGACGGGACGCATGAGTGGACCGGATGTAGGCGAG
CAAATTAGGATGTTGCATTTGGCGGAGACAGGGGCCACTAGCGTTGTAGA
CTTGCCCACGCGAATTGAAAAATTGAGAGAGATCCTGCGCAAGGCTCCCG
TTGAAGCCAAGGAGCCCGTAGCGGGTTGA

Coding sequence (CDS) from alignment at CM002462.1:261372..263150+

>rna3859 ID=rna3859|Name=rna3859|organism=Nannochloropsis gaditana|type=CDS|length=1779bp|location=Sequence derived from alignment at CM002462.1:261372..263150+ (Nannochloropsis gaditana)
ATGAAGGTGATTGCATTCATGACTTTAACCGTGACGGGTCTCATTTCTTG
CTGCTCAGGCCGCGCATTAGCCAGCATCACCTATGCTGCCGGTAGAAGGC
AAAACATTGCTGGCTTTCTAGGGAGGGCCCGAATTAGCACATTCCGATCA
CCAACGAGTACTAAGCAGCCTTTACAGCAGATTGATCAGCCAAAAAGCTC
ACCCGATGCCTTGTTTGCCCGCCGCATGTCCACGTTGATGGCGGCTGTGA
GGGTCCGTTTCGCGCCTTCACCTACTGGGACGTTGCATGTGGGAGGAGCT
CGCACGGCATTGTACAATTATCTGGTAGCCAGGCAACATAAGGACGGCGT
CTTCGTTCTCCGCATCGAAGATACGGACACGGCAAGGTCCACGCGGGAAT
CCGAGGAGAGCATGTTGGCAGATTTGCGTTTTTTGGGGCTGGACTGGGAC
GAAGGGCCGGATAAACCGGGCGCGGTGGGACCGTACCGTCAATCAGAACG
CATTGACGTCTACAAGAAAGTGGCGCAGCAACTATTGGAGTCCGGAGATG
CTTACCCTTGTTTTTGCACggaagaagagctggaggccaagcggcaggcg
gcggaggcggccgggaAACCTCCTCAATACGACAGAACGTGGCGAGACGC
GGACCCGGCACTGGTAAAGGAGAAGATTGAGGCAGGAGAGCCGTATACTG
TCCGGTTCAAGGTAGCCCCGGGCAGGCGGGTGGAGATTGATGACGCGGTG
CGTGGTACTGTGGGATGGGACGCAGACGCGACGGTGGGGgacttcatcct
ccttcggTCGAGCGGGATGCCTGTCTATAATTTCTGCGTGGCCGTGGATG
ATGCCTTGATGGGTATCACCACCGTGATTCGCGCGGAGGAACACCTGACC
AACACATTGCGGCAGTGTTTGATTTTGGAGGCGCTCAAGTACCCCGCACC
CAAGTACGCCCATTGTTCGCTCATTCTCGGGGAGGATCGGTCCAAGCTCT
CCAAGCGGCACGGGGCAACCTCGGTGGATCAGTTCCGGGCCCAGGGTTTC
CTGCCTGACGCCATGTTGAACTATCTGGCCCTGCTGGGTTGGAACGATGG
GACCGAGCAGGAGGTGTTCTCCAGACAGGAGCTGATCGACCGGTTTTCCT
TGAATCGGGTAGTGAAAAGCCCCTCTGTCTTTGACATGGCCAAGTTGCGG
TGGGTGAATGGGCAGCATCTGAGGGCCTTGCCGGACGAGAACTTGGTGCC
ATTGGTAGGGGCgtgcttggaggaggaagggatggtcaAGGTTGGGGCCG
AAGGCGCGGCTTTTGTGTCCTACGCTACTCAGGTGGCGAAGGGCTCCATG
GAATTGGTGAACGATGCGGCGACTATTGTCGGTGATGTCTTGACGTACCC
CTTGGAAGAAACCTTGGCGTCTGGGGAGGCGGATGCCTTGGTAGCAGAAG
GCTTGTGGGAGATGGCCAGGGAAGTGGTGAGTGCGTTCGAAGCGAACGAG
ATGccgcgaggaaaggaagaagatttTGCCGCGTTATGGAAGGCGTGGGT
GAAAGCTGTTGGTAAGaaaatggggaggaaaggaaagcagctCTTTCACC
CTATCCGCCTCGCATTGACGGGACGCATGAGTGGACCGGATGTAGGCGAG
CAAATTAGGATGTTGCATTTGGCGGAGACAGGGGCCACTAGCGTTGTAGA
CTTGCCCACGCGAATTGAAAAATTGAGAGAGATCCTGCGCAAGGCTCCCG
TTGAAGCCAAGGAGCCCGTAGCGGGTTGA

Synonyms

Publications