EWM26798.1, cds3850 (CDS) Nannochloropsis gaditana

Overview
NameEWM26798.1
Unique Namecds3850
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:261372..263150 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26798.1
ProductAminoacyl-tRNA synthetase, class I, conserved site
Orig transcript idgnl|cribi|Naga_100018g48.2778.mrna
GeneGTS
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:261372..263150 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006424glutamyl-tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
GO:0043039tRNA aminoacylation
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003723RNA binding
GO:0000049tRNA binding
GO:0004818glutamate-tRNA ligase activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR008925aa-tRNA-synth_I_codon-bd
IPR001412aa-tRNA-synth_I_CS
IPR004527Glu-tRNA-ligase_bac/mito
IPR020061Glu/Gln-tRNA-synth_Ib_a-bdl
IPR020058Glu/Gln-tRNA-synth_Ib_cat-dom
IPR020751aa-tRNA-synth_I_codon-bd_sub2
IPR014729Rossmann-like_a/b/a_fold
IPR000924Glu/Gln-tRNA-synth
Homology
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|585108889|gb|EWM26798.1| (Aminoacyl-tRNA synthetase, class I, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 1214.91 bits (3142), Expect = 0.000e+0
Identity = 592/592 (100.00%), Postives = 592/592 (100.00%), Query Frame = 0
Query:    1 MKVIAFMTLTVTGLISCCSGRALASITYAAGRRQNIAGFLGRARISTFRSPTSTKQPLQQIDQPKSSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREILRKAPVEAKEPVAG 592
            MKVIAFMTLTVTGLISCCSGRALASITYAAGRRQNIAGFLGRARISTFRSPTSTKQPLQQIDQPKSSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREILRKAPVEAKEPVAG
Sbjct:    1 MKVIAFMTLTVTGLISCCSGRALASITYAAGRRQNIAGFLGRARISTFRSPTSTKQPLQQIDQPKSSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREILRKAPVEAKEPVAG 592          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|298715644|emb|CBJ28170.1| (Glutamyl-tRNA Synthetase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0
Identity = 332/520 (63.85%), Postives = 399/520 (76.73%), Query Frame = 0
Query:   75 RMSTLM---------------AAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREIL 579
            RMS+LM               A VRVRFAPSPTGTLHVGGARTAL+N+L A+ +  G F+LRIEDTD ARS+RESEESMLADLR+LGL+WDEGPDK G VGPYRQSER ++YK++A +L+E+G AYPCFCTEEEL AKR+ AE   + PQYD TWRDADPA VK K+E G PYT RFKV  G+R+ I D VRG V WDA+ATVGDFILLRS+G+PVYNFCVAVDDA MGIT V+RAEEHLTN+LRQCLIL+AL++P P+YAHCSLILGEDRSKLSKRHGATSV QFR QGFLP AM NYL+LLGWNDGTE+E+F+ +EL + F L RVVKS +VFDM KL+W+NGQHLRAL  E LVP+VG+ L E G+ K    G  FV  A  + +GS+ELV DA +   D+L Y  +ET++S E+  LV +G  E+   +V+ F+A EMP+   EDF+  +K W+KA GK + RKGK+LFHPIRLALTG MSGPD+GEQ+++L LA       V L  RIE L+  L
Sbjct:   50 RMSSLMEDVMEDTAPVINAAGADVRVRFAPSPTGTLHVGGARTALFNFLQAK-NAGGKFILRIEDTDEARSSRESEESMLADLRWLGLEWDEGPDKGGEVGPYRQSERGEIYKEMADKLVEAGWAYPCFCTEEELIAKREQAENKNEAPQYDGTWRDADPAEVKAKMEEGVPYTYRFKVPKGKRIVIQDLVRGQVAWDAEATVGDFILLRSTGVPVYNFCVAVDDAQMGITHVVRAEEHLTNSLRQCLILDALEFPRPQYAHCSLILGEDRSKLSKRHGATSVGQFRQQGFLPSAMKNYLSLLGWNDGTEKEIFTEEELHEAFDLRRVVKSSAVFDMTKLKWMNGQHLRALAVEELVPMVGSTLVEAGVCKDA--GGPFVMSAATLVQGSLELVTDAISQTQDMLGYKFDETISSEESTELVGDGFSEVVAAIVADFDAGEMPKPGAEDFSPAFKKWIKAKGKALTRKGKRLFHPIRLALTGSMSGPDIGEQLKLLELASEEGVENVSLAARIETLKAWL 566          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|546325060|ref|XP_005718553.1| (Glutamyl-tRNA Synthetase, chloroplast [Chondrus crispus] >gi|507115155|emb|CDF38648.1| Glutamyl-tRNA Synthetase, chloroplast [Chondrus crispus])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 321/523 (61.38%), Postives = 394/523 (75.33%), Query Frame = 0
Query:   70 ALFARRMSTLMAAV-------RVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEG-AAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAE--GLWEMAREVVSAFEANEMPRGKE-EDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETG--ATSVVDLPTRIEKLREIL 579
            AL +RR +T  A V       RVRFAPSPTG LHVGGARTALYN+L+ARQ K G F++R+EDTD  RSTRESE+ +L DL +LGL WDEGP   G  GPYRQSER  +Y ++A +L+  G AYPCFCTEEEL+ KR+ AE  G+PPQYD TWRDADP  VK++I+ GE YTVRFKV  G RV IDDAVRG V WDAD+TVGDFI+LRS+G+PVYNFCVAVDDALMG++TV+RAEEHLTNTLRQ LIL AL +  P+YAHCSLILG DRSKLSKRHGATSV  FR +G+LP AM+NYLA+LGWNDGTE+E+++ +ELI+ F ++R+ KSP++FD  KLR++NGQHLRALP + L  LV A  +  G+     E  +     A  + +GS+ELVNDA   +     YPL+ETLASGEAD L+ E  G  E+A   + A++A E+P G + E+    WK WVKAVGK+ GRKGK+LFHP+RLALTG+MSGPDVGE +++L+L E G  ATS V L  R+E LR  L
Sbjct:   41 ALRSRRFATPSATVAPATKQVRVRFAPSPTGALHVGGARTALYNWLLARQTK-GAFLVRVEDTDVVRSTRESEDMVLEDLTWLGLHWDEGPRVGGDRGPYRQSERSTIYVELADKLVREGKAYPCFCTEEELDRKREEAEREGRPPQYDGTWRDADPEEVKKRIDNGEQYTVRFKVPSGSRVIIDDAVRGKVAWDADSTVGDFIILRSTGVPVYNFCVAVDDALMGVSTVLRAEEHLTNTLRQVLILRALDFETPEYAHCSLILGSDRSKLSKRHGATSVTLFREEGYLPVAMINYLAMLGWNDGTEKEIYTVEELIEVFDIHRITKSPAMFDGDKLRYINGQHLRALPSKELEDLVLAEWKLSGVFNDTLEADSPLAQAAVALVRGSLELVNDANEEMQKAFAYPLDETLASGEADELIGEDGGFNEVASAALRAYDAGELPIGDDGEEHKGKWKKWVKAVGKEYGRKGKRLFHPLRLALTGKMSGPDVGEILQILYLTEKGEAATSFVPLAERMEALRNKL 562          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|397576095|gb|EJK50060.1| (hypothetical protein THAOC_31011 [Thalassiosira oceanica])

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 317/554 (57.22%), Postives = 385/554 (69.49%), Query Frame = 0
Query:   84 RVRFAPSPTGTLHVGGARTALYNYLVARQ------HKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGA-VGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAA---FVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLAS----GEADALVAEG-LWEMAREVVSAFEANEMPR-------------------------GKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATS-------VVDLPTRIEKLREILRKAPVEAKEPV 590
            R+RFAPSPTG+LHVGGARTALYN+LVA++      + +G FVLR+EDTD ARST+ESE+S+LADL +LGL WDEGPD P A  GPYRQSER  +Y K+AQ L++ G AYPCFCT EELE  +   EA G PP+YD TWRDADPALVKEK+ AG+PYTVRFKV  G RV IDDAVRGTV WDA+ATVGDFILLRSSG+PVYNFCVAVDDA MGITTVIRAEEHLTNTLRQ LIL+AL  P P+YAHCSLILGED+ KLSKRHGATS +QFR  GFLPDAM+NYLALLGWNDGT+ E+F+R ELI+ F ++R+VKSPSVFDM KL+WVN QHL+A+  E +  LV   L    M+K GA+ +A   FV   T +AK  ME + DAAT    VL Y L  T       GEA  ++  G  + +A  V+   ++   P                          G E  +   +KA +K++ K M  KGK LFHP+RLALTG MSG DV +Q+ +L ++ET  ++       VV   TR+E+LR+     P E + P+
Sbjct:  125 RMRFAPSPTGSLHVGGARTALYNWLVAKKGQLDHPNTEGGFVLRVEDTDLARSTKESEDSVLADLSWLGLTWDEGPDMPLAKYGPYRQSERSSLYSKLAQTLIDEGKAYPCFCTAEELEEMKVRMEAEGIPPRYDGTWRDADPALVKEKMAAGDPYTVRFKVPDGVRVVIDDAVRGTVSWDAEATVGDFILLRSSGVPVYNFCVAVDDASMGITTVIRAEEHLTNTLRQGLILDALGAPRPRYAHCSLILGEDKQKLSKRHGATSCNQFRLDGFLPDAMVNYLALLGWNDGTDNEIFTRDELIEAFDVDRIVKSPSVFDMDKLKWVNSQHLKAMEVEEIQDLVEEQLNFLDMIKEGADDSAKRDFVFATTTLAKQMMETLQDAATNARTVLGYNLPATFGDLEDGGEAKEMIELGNFYNIATRVLEMHDSKSFPTPAADNLLTAFVDGSNKAIVEDNDVGGDETSYPQEYKATMKSMAKDMKVKGKNLFHPVRLALTGEMSGQDVTKQLSLLAMSETDNSAINADSAGVVSFETRMERLRKFCESIPEEFRVPM 678          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|873226065|emb|CEM22119.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 300/519 (57.80%), Postives = 380/519 (73.22%), Query Frame = 0
Query:   66 SSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWND--GTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEED---FAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREIL 579
            S  DA+  ++ + +   VRVRFAPSPTG+LHVGGARTALYNYL+A+Q K G FV+R+EDTDTARSTRESE  ++ DLR+LGL+ +EGP      GPYRQSER  +YK +A +L+++G AYPCFCT++ELEA RQ AE  G+PP YD TWRDADP  + +  E G PYT+RF+V  G+RV ++D VRG V WDA + VGDFI+LRSSGMPVYNFCVAVDDALM IT VIRAEEHL+NTLRQ LIL+ L YPAP+YAHCSLILG DRSKLSKRHGATSV QFR QG+LP A+ NYLALLGWN+  GTE+E+++  EL+  FSL+RV  S +VFD+ KL WVN QHL+A     ++  +G  L ++  +        F   A  + +  ++L ++A  +V  +L +PL++T++SGEA  L+ +G  ++AR VV A ++  +P G   D   F + WK WVK VGK +GRKGK+LFHPIRLALTGRMSGPDVG+Q+R+L LA       V L  RI KLRE L
Sbjct:  108 SGSDAIVTKK-TPVDGPVRVRFAPSPTGSLHVGGARTALYNYLLAKQTK-GKFVIRVEDTDTARSTRESENGIMEDLRWLGLEANEGPGTESKYGPYRQSERTHIYKDMADRLVQAGLAYPCFCTDQELEAMRQRAEEEGRPPHYDGTWRDADPDEIAKMKEQGVPYTIRFRVPSGKRVTVNDHVRGEVSWDAGSAVGDFIILRSSGMPVYNFCVAVDDALMEITHVIRAEEHLSNTLRQLLILDGLGYPAPEYAHCSLILGTDRSKLSKRHGATSVGQFREQGYLPQALNNYLALLGWNEGTGTEKEIYTMDELVSSFSLDRVGSSGAVFDLQKLNWVNSQHLKAQDPALILEQLGRQL-DKAGIGGNEGTGGFRELAVDMVREPLQLAHEAPGLVSALLEHPLDDTISSGEASELLEDGFVDVARAVVEAHDSGALPTGDGRDGAEFESAWKGWVKNVGKSLGRKGKRLFHPIRLALTGRMSGPDVGQQVRLLSLAVKEGVPCVCLDDRIGKLREWL 623          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|224013335|ref|XP_002295319.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969042|gb|EED87385.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 309/522 (59.20%), Postives = 375/522 (71.84%), Query Frame = 0
Query:   84 RVRFAPSPTGTLHVGGARTALYNYLVAR-------QHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGA-VGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAA---FVSYATQVAKGSMELVNDAATIVGDVLTYPLEET---LASGEADALVAEG-LWEMAREVVSAFEANEMPRGKEEDFAALWK-------AWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATS-------VVDLPTRIEKLR 576
            R+RFAPSPTG+LHVGGARTALYN+LVA+       + + G FVLR+EDTD ARST+ESE+S+LADL +LGL WDEGPD P A  GPYRQSER  +Y KVA +L+  G AYPCFCT EEL+  +   EA G PP+YD TWRDADP +V +KI  GEPYTVRFKV PG RV IDDAVRGTV WDA+ATVGDFILLRSSG+PVYNFCVAVDDA MGITTVIRAEEHLTNTLRQ LIL+AL  P P+YAHCSLILGED+ KLSKRHGATS +QFR  GFLPDAM+NYLALLGWNDGT+ E+F+R+ELI+ F ++R+VKSPSVFDM KL+WVN QHL+ +  E+L+ LV   LE   M+K G +      FV  +T +AK  ME   DAAT    VL Y L  T   L+  EA  +V +G  + +A +++   EA   P     +  A +        A +KA+ K+MG KGK LFHP+RLALTG MSG DV +Q+ +L +A    ++       VV   +R+E L+
Sbjct:    1 RMRFAPSPTGSLHVGGARTALYNWLVAKKGLLDYGEERGGGFVLRVEDTDLARSTKESEDSVLADLSWLGLLWDEGPDTPLAKYGPYRQSERSALYSKVANRLIAQGKAYPCFCTTEELDEMKARMEAEGIPPRYDGTWRDADPEVVAKKIADGEPYTVRFKVPPGARVVIDDAVRGTVAWDAEATVGDFILLRSSGVPVYNFCVAVDDATMGITTVIRAEEHLTNTLRQGLILDALGAPRPRYAHCSLILGEDKQKLSKRHGATSCNQFRLDGFLPDAMINYLALLGWNDGTDNEIFTREELIEAFDIDRIVKSPSVFDMDKLKWVNSQHLKKMEVEDLLGLVQEQLEFMEMIKEGGDEKKTRDFVLASTALAKQMMETTQDAATNAKTVLGYDLPATFDGLSDAEAKTMVEQGNFYGIAVKIIEMHEAGSFPMPDANNMLAAFMDGSNKAIATMKALAKEMGVKGKDLFHPVRLALTGEMSGQDVTKQMSLLAMASEDDSAVNVEKAGVVAFESRVEMLK 522          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|544217404|ref|XP_005538846.1| (glutamate--tRNA ligase, chloroplast or mitochondrial [Cyanidioschyzon merolae strain 10D] >gi|449019408|dbj|BAM82810.1| glutamate--tRNA ligase, chloroplast or mitochondrial [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 306/556 (55.04%), Postives = 388/556 (69.78%), Query Frame = 0
Query:   83 VRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKP---------GAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVP-LVGACLE--------EEGMVKVGAEGAA-------------FVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAE--GLWEMAREVVSAFEANEMPRG------------------KEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSV--VDLPTRIEKLREILRKAPVE 585
            VRVRFAPSPTG LHVGGARTAL+N+L AR ++ G F++RIEDTD ARS+R SE ++L DLR+LGLDWDEGP  P         G  GPYRQSER  +Y+  A +L+ESG  YPCFCTEE+LE KR+ AEA  + PQYD T RDADPAL++++++ G+PYT+RF+V  G RVEI D +RG + WDA+AT+GDFI++RSSG+PVYNFCVAVDDALMGITTVIRAEEHLTNTLRQ LIL+AL Y  P+YAH SLILG DR KLSKRHGATS+DQ+  +GFLP+AM+NYLALLGWNDGTE+E++S +ELI  FSL+R+ KS +VFD  KLRW+NG HLR++P E L   L+   L+        EE  V V    AA             F S AT++ +GS+EL  D   ++ D+L YPLEET+ SG++D L+    G  ++A  V+  +   E+P G                   E+ F   WKAWVK +G ++GRK K+LFHPIRL +TGRM+GPDVGE +R+L LA+ G   V  V L  R+  L  +++K   E
Sbjct:  195 VRVRFAPSPTGNLHVGGARTALFNWLYAR-NQGGYFIIRIEDTDQARSSRASELAVLRDLRWLGLDWDEGPAYPDEPTTEPYRGERGPYRQSERSAIYEAAAAKLIESGAVYPCFCTEEQLERKRRLAEAEHRAPQYDGTCRDADPALIRKRLQRGDPYTLRFRVPAGTRVEIRDVIRGDIAWDANATIGDFIIVRSSGLPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQALILDALGYDRPQYAHVSLILGADRQKLSKRHGATSIDQYAREGFLPEAMMNYLALLGWNDGTEREIYSVEELIKAFSLDRITKSAAVFDANKLRWMNGLHLRSMPPEKLCGVLIRFWLDANVIQRPAEEIDVDVPTRAAAGVAQSASALRFWVFTSRATELLRGSIELAKDCVPLLQDILEYPLEETIESGDSDELLTPQGGFLDIATAVLERYRKGEIPFGDEIEPDPEMMVPNAPSLTSEDPFIEDWKAWVKGIGTQLGRKSKRLFHPIRLVMTGRMTGPDVGEIMRILGLAK-GVVQVPYVPLSERMRILERVVKKLRTE 748          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|545707988|ref|XP_005706307.1| (glutamyl-tRNA synthetase [Galdieria sulphuraria] >gi|452822771|gb|EME29787.1| glutamyl-tRNA synthetase [Galdieria sulphuraria])

HSP 1 Score: 571.237 bits (1471), Expect = 0.000e+0
Identity = 279/513 (54.39%), Postives = 369/513 (71.93%), Query Frame = 0
Query:   79 LMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPD---------KPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGA-AFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAE--GLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREIL 579
            L   VRVRFAPSPTG LHVGGARTAL+N+L AR+H  G+F+LRIEDTD +RSTRE+EES+L DLR+LGLDWD GP+         +   +GP RQSER  +YKK  ++L   G  YPCFC+EEELE +R   EA+G+ P+Y  T R   P  ++++I AG PY  RFKV    ++ + D VRG V WDA+AT GDFI++RS+G+PVYNFCVA+DDALM I+TVIRAEEHLTNT+RQ L+L AL +P P YAHCSLILGEDR+KLSKRHGATSV+QFR++G+LP+A++NYLALLGW+DGTEQE +SR+EL   FSL+R+ K+P+VFD+ KLRW+N ++LR+LP E L  ++   L+   ++    + + +      +V + S+EL +D    V  + +YPLEET+ SGEA  L+ +  G +E++  +V +F+    P G+ E+   LWK W+K V K+  RKGK LFHP+RLALTG+MSGPDVG+ IR+L LA+  +   V L  RI  L   L
Sbjct:   86 LQRPVRVRFAPSPTGQLHVGGARTALFNWLHARKH-SGIFMLRIEDTDLSRSTRENEESLLRDLRWLGLDWDYGPEGVTNNSNLEELKKLGPLRQSERGFIYKKYVEKLHSEGFVYPCFCSEEELERQRIEMEASGQTPKYAGTCRHLTPTEIEKQIAAGVPYVFRFKVPKDTKIVLHDIVRGDVVWDAEATFGDFIVMRSNGVPVYNFCVAIDDALMEISTVIRAEEHLTNTVRQILVLHALGFPLPSYAHCSLILGEDRTKLSKRHGATSVNQFRSEGYLPEALINYLALLGWHDGTEQEFYSREELTKSFSLSRLSKAPAVFDIEKLRWMNARYLRSLPIEKLRTVISERLKLAHLLYSHVDSSDSLTEMIAEVTRDSVELTSDYEYQVTRIFSYPLEETVQSGEAAELLTKEGGFYELSEVIVRSFKDGTFPCGENENHRVLWKEWIKCVSKETKRKGKHLFHPVRLALTGKMSGPDVGDVIRILSLAKGKSDKFVPLEQRIRILESFL 597          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|1109178317|gb|APF45940.1| (plastid glutamyl tRNA synthetase, partial [Trachelomonas ellipsoidalis])

HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 304/544 (55.88%), Postives = 380/544 (69.85%), Query Frame = 0
Query:   45 ISTFRSPTSTKQPLQQIDQPKSSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGP--DKPGAVGPYRQSERIDVYKKVAQQLLES------GDAYPCFCTEEELEAKRQAAEAAGK-PPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLAS-GEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREI 578
            + T R  +S +   Q I    S   A  A +  T +A +R RFAPSPTG+LHVGGARTALYN+L+A++   G F+LRIEDTD ARSTRESEESM ADLR+LGL+WDEGP  DK   V P+RQSER  +Y+++AQ+L+ +        AYPCF T+EE++A + A EA G+    +   WRDA    V++KI AGEPY VRF+V  G+RV I+D VRG VGWDA+AT+GDF+LLRSSG+PVYNFCVAVDDALMGIT VIRAEEHLTNTLRQ LILEAL +  P YAHCSLILGED SKLSKRHGATSV QF  +GF+P AM+NYL  LGWNDGTE+EV++  E+ID F+++RV KSPSVFDM KLRWVN QHL A+ D  L  L+G  L + G+ K  A  +        +AK  +EL+ DA  +V   L Y L  +LA+   A  L++E    +A+ +V+A+EA E P   + DF   + AW+K  GKK+GRKGKQL  P RLALTG MSGPDVG Q+R++ LAE      V L  R+  L+ +
Sbjct:    2 LRTQRHTSSVQGDFQAIMVTTSEKKAEAASK--TKLAPMRTRFAPSPTGSLHVGGARTALYNWLMAKK-TGGNFILRIEDTDMARSTRESEESMKADLRWLGLNWDEGPETDKEKEV-PFRQSERGAIYQEMAQKLIATMGPDGKSVAYPCFSTQEEVDALKTATEATGEFQGTFVSPWRDAPQEEVQKKIAAGEPYAVRFRVPKGKRVAINDVVRGPVGWDAEATIGDFVLLRSSGVPVYNFCVAVDDALMGITHVIRAEEHLTNTLRQGLILEALGFAMPTYAHCSLILGEDGSKLSKRHGATSVAQFAQEGFVPSAMINYLVGLGWNDGTEKEVYTVPEIIDAFNIDRVQKSPSVFDMNKLRWVNAQHLHAMDDAQLAALLGPFLVKAGLCK--AVDSPMAEMLAHMAKKKIELLVDAIPLVQAALAYDLTNSLANDAAATKLLSEDFKGLAKALVAAYEAGEFPDPAQADFVDKYSAWIKEFGKKIGRKGKQLMQPARLALTGVMSGPDVGCQLRIVALAEQDGVPCVSLADRMAALKAL 539          
BLAST of EWM26798.1 vs. NCBI_GenBank
Match: gi|551674366|ref|XP_005839938.1| (glutamyl-tRNA synthetase [Guillardia theta CCMP2712] >gi|428184102|gb|EKX52958.1| glutamyl-tRNA synthetase [Guillardia theta CCMP2712])

HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0
Identity = 269/465 (57.85%), Postives = 345/465 (74.19%), Query Frame = 0
Query:  116 GVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGAEGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREILR 580
            G FVLRIEDTD ARST+ESE SM+ADL++LGLDWDEGP   G    YRQSER D+Y K+A++L + G AYPCFCTEEELE KR+AAE  G    YD TWRDADPA VK +++AG+PYT+RFKV  G+ V I D VRG + WD +AT+GDFILLRS+G+PVYNFCVAVDDALMGITTV RAEEHLTNT+RQ L+LEAL +  P+YAHCSLILGEDRSKLSKRHGATS +QFR QGFLPDAM+NYLALLGWNDGT+++++SR+ELI  F LNRV  SP++FDM KL+W+NGQHLRA+  E  +PL+   +  E +  +G     F+ +   + +   +LVNDA++I+  VL + LEET  + EA  ++ +    +A +++  F +N +P      F+  +K WV  +GK  GRKGK+LF P+RLALTG ++GPD+G QI  + +AE      VD+ TRIE L++ + 
Sbjct:    7 GKFVLRIEDTDLARSTKESENSMIADLKWLGLDWDEGPYVGGPANLYRQSERNDIYVKMAKKLWDMGFAYPCFCTEEELEEKRKAAEQDGSKVAYDGTWRDADPAEVKRRLDAGDPYTIRFKVPKGKVVTIHDIVRGRISWDVEATLGDFILLRSNGVPVYNFCVAVDDALMGITTVARAEEHLTNTIRQVLVLEALGFNIPEYAHCSLILGEDRSKLSKRHGATSCNQFREQGFLPDAMINYLALLGWNDGTDKDIYSREELIASFDLNRVTPSPAMFDMQKLKWINGQHLRAMKKEEFLPLMAEAMMREKV--IGHADEEFLDHVAGMVQEKCDLVNDASSILQTVLDFQLEETSKTEEAKEILGDDFKALADKIIEEFNSNAIPTNPSPTFSDDFKQWVNKLGKSTGRKGKKLFMPVRLALTGNLAGPDIGAQIMTVGMAERVQAKHVDMKTRIEMLKKFVN 469          
The following BLAST results are available for this feature:
BLAST of EWM26798.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108889|gb|EWM26798.1|0.000e+0100.00Aminoacyl-tRNA synthetase, class I, conserved site... [more]
gi|298715644|emb|CBJ28170.1|0.000e+063.85Glutamyl-tRNA Synthetase, chloroplast precursor [E... [more]
gi|546325060|ref|XP_005718553.1|0.000e+061.38Glutamyl-tRNA Synthetase, chloroplast [Chondrus cr... [more]
gi|397576095|gb|EJK50060.1|0.000e+057.22hypothetical protein THAOC_31011 [Thalassiosira oc... [more]
gi|873226065|emb|CEM22119.1|0.000e+057.80unnamed protein product [Vitrella brassicaformis C... [more]
gi|224013335|ref|XP_002295319.1|0.000e+059.20predicted protein, partial [Thalassiosira pseudona... [more]
gi|544217404|ref|XP_005538846.1|0.000e+055.04glutamate--tRNA ligase, chloroplast or mitochondri... [more]
gi|545707988|ref|XP_005706307.1|0.000e+054.39glutamyl-tRNA synthetase [Galdieria sulphuraria] >... [more]
gi|1109178317|gb|APF45940.1|0.000e+055.88plastid glutamyl tRNA synthetase, partial [Trachel... [more]
gi|551674366|ref|XP_005839938.1|0.000e+057.85glutamyl-tRNA synthetase [Guillardia theta CCMP271... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3859rna3859Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications