rna3758, rna3758 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3758
Unique Name	rna3758
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1156
Alignment location	CM002461.1:1152758..1155195 +

Link to JBrowse

Properties


Property Name	Value
Product	RNA polymerase Rpc34
Orig transcript id	gnl\|cribi\|Naga_100284g5.707.mrna
Orig protein id	gnl\|cribi\|Naga_100284g5.707
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1152758..1155195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100284g5	gene3621	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3758	rna3758-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26924.1	cds3749	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1152758..1155195+
coding sequence from alignment at CM002461.1:1152758..1155195+

mRNA sequence

>rna3758 ID=rna3758|Name=rna3758|organism=Nannochloropsis gaditana|type=mRNA|length=1156bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTCTTTGCCCTCTT
TCATGCCTTCTGTTACGCGCCTACCCCCCCCTCCCCCCCTCGCACGCTCC
CTAGGCTCAGAAGCAGCTGAAGCTCATGCAGGCCTCGGACGAAGACGCCA
CCCTCACTCAGATGACGGGCGCTTGGGTTGATCTCGCCCAGGGCGGCACG
GGCTACCGTGACGCGCAGCTACTCTTTCAAGAGCTGGTCGCCAAATACGG
CAACAGCGCCCTGCTCTTGAACGGGCTGGGGGTCTCTCTCCTTCATCAAG
GTTTGTACGAGGAAGCCGACAAATACCTCGCACAATGTCTCCGAGAGGAC
CCCGACAAGAGCAACGCCGACACCCTCATAAACCTTATCGCCACGGCCCA
GCACTTACACAAACCCCCTGAGACGGTGGCCAAGCTCTTGAGCCAATTGC
AAAAGGTGGCACCCGACCACCCTTACGTCCAAAATCTTGGCACTTTAGAA
GGCGCTTTTGACCGTCTCCAGGCTCAGTTCGCCTCCCATATCGTGAACGC
ATAGGGAAGGACTTCAAATGTGGCGGGAGGGATGGAGGGCAGAGCAGGCA
GGAGTCCTCACATGAGGTAAATGATGCCAAGAGAAGAAAGAAATTCTCAA
TAGAAATAATGCGTATTGAGACCTATCTTCCTGTTCCGTTTGCTGATGAC
ACGTAATTGCTTTATCATGCTCTGTCTCAGTACCCCTCTGATCATCTTGT
CGGGGCTTGTGGAAGGGAGGGTAGGCGCTGACGCGTTGGAGGCGGCCAAT
TGGGAAGACGAAGTTTATCGGCTTTTGGAATTTCAAGCGTTCCAACATGT
TCCACATCCACTCTTGGTCTTTCTTGGCTTTCGCTGTTTTCCTTCTTGGA
TCTCCTCTTCTTATCTATGACCTCGCGACGTTTCCTGTCAAGGGCGTCGC
GAGCCCGTGCTAGCGCCGCCAAGATATTTTCGGCCCACGCATCCATGCCG
TCGGGATCCATAACACGGCTGTGAAATTTAAGAAATTCAAGTGTTTTACA
AAAAGTAAGTGTTGTTCCTTCGGTGGCGGGGCAAAGCAGCTTTAAAAAGA
GACTACCTGGACTAGTGTTCGTGACTGTGTGGCAGTCGCACGCAACACAA
GTACGG

protein sequence of rna3758

>rna3758-protein ID=rna3758-protein|Name=rna3758|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
METSRKETTGAGGGQHKDESGNLREEFLSLCLSHAEGLRNEQLREHFTER
YLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLV
YQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSK
TRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPP
SLGIIADYVRNSGVSKVKSEIKNVEKRECRMAGRTSDSLSANMRLIAGCE
YDVLRLPACTTCAHCFFSLCTI

mRNA from alignment at CM002461.1:1152758..1155195+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3758 ID=rna3758|Name=rna3758|organism=Nannochloropsis gaditana|type=mRNA|length=2438bp|location=Sequence derived from alignment at CM002461.1:1152758..1155195+ (Nannochloropsis gaditana)
CCACCAAACAAGCGTATTGATTGTGAAAGAATACAATCAAACATAACGAT
CAAATCACGTTTATAGGTCtggagcaagaagaaagcgaaagCCTTGCATG
GGAGCGGGAGAATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtgga
ggacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTT
ATGCCTCAGCCATGCAGAGGTAGGGAGATGCAGGCGAAGAACGCGGGGCC
CAGTAAAGATTGCTGTAAAGCAATCATTGCTTTGGTAGcattctcccttt
cccattttGCCTCGTCCATTTTCTACTTCCCAGGGCTTACGCAACGAGCA
ACTACGGGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATTA
ACAGCTGTCTTGCCGAGGTATGAAATCAATTGATTGGCATTGGAGATGGG
GAAATAATTGCGGATAAAAGGGAATACTTGGAAATCCTTCCTGTGCGGCG
AGAGGAAAATGATTTCGATGAATGTTAAAGCGAAGGCAATGCCAGACTCT
ATGATTCCTACATCGTTACTTACATTATAACTCACGTCTTGCTATCCTGC
TACTTAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCT
ATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGTAC
GTTAATATACATAATATAAtaatatgtatatatatatttacAAGGGGTAG
AGATTGCTCGAGCATgagggaagcgaaggagaggggaatggatgatgaag
acggaggaaatgggaggTGTGGGGTGCAGGGGATTGTGAGTAGTTGTCCT
TGGTTGGCGGCTCCCTGTATAACTATCTATACTTCATATTCACGGCATCT
AGGGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATAA
AGGAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGG
TGAGGCCGGGAGCTAGGATTACTGGAAACGGGAAAGGCAGATAGTAGAAG
TTAGGGGCGACAGTAGATAATGTAGGAAAAACTATGTCGTCAACTCAAGC
GATGATTTTATCTGCCATGCCTCGACTGGTTTTGTGTCGCTACCGGACTC
ACAGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAA
AGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTAC
GACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGTATGGCCAGAG
GAATGGAAGCAGAGAGGAatagagaggggaagagaggggagacgggacgg
ggaagaaaagaggcgcTCTGGGAAGATGGGTATACTTCTGTACTTTACTT
GCGCTTGAAAGCTGATTTCTTGTCTTTGTCATATGTGACGTCAACGAGCT
CCGTATAACTTAAGCGCCTTCACGCCCTGAACCAGGTACACGGAACACGA
GTTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCA
TCAAGCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTC
CGAAATTCCGGCGTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAA
ACGAGAGTGTAGaatggcagggaggacgagtgATTCTTTGAGTGCGAATA
TGCGGCTCATTGCTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCATGC
ACCACTTGTGCTCATTGCTTCTTCTCATTGTGCACAATTTAACCTTTGTA
CGAAATTGCATCCCCATTTCACACCCCTTTAAGGTGGAGCTGGCTCCCGG
TGAGGTCCAGCTTATCATCAACAGCCTTGCCTACGACATGAAGATCGAGC
CTGTGCAAAACAGCCTTGTCGGCGCTCTGCCTGTACGCAATTATTAATTC
CCTCTTTTGtgtttccctccatttccaacTCCACCCTTTATGCCCTGATG
GGCAGGCATTTTACTCTCGACAGCTACGTCATTAATgcactttcttttct
ctttgaCTTCCTCTTtaccggccttcctcccacgaccATCGCGGTCAACC
TTTTTTTCCATGTCTGCCCTCCATACCTTCCTTCAAGTCCTCCGACGGGA
CCCCTTGCTACAAAATTTCGCGCCAGGTCACGCCGCTCAATCACTTCACG
GACTTCCCATGTGGTCGATGTCCTGTGCAGGCGCAATgcgaagaaggggg
tgagATCTCTCCGGCAAACTGTCGGTACTTTAATGTGTGGCTGGATGTCA
ACAATGGAGcggggggggttgggggggcgatgatcggaggaggaaatgca
ggGTCGTTGGATTTTTGAGGGCTTTGTAATCTTAGTCATTTGTCGAATGG
CATTTAAAAGAAGGCGCAAAAAGTATAGGCGAATCACT

Coding sequence (CDS) from alignment at CM002461.1:1152758..1155195+

>rna3758 ID=rna3758|Name=rna3758|organism=Nannochloropsis gaditana|type=CDS|length=4914bp|location=Sequence derived from alignment at CM002461.1:1152758..1155195+ (Nannochloropsis gaditana)
ATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtggaggacaacATAA
GGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCC
ATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGA
TACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCAT
CCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATC
CGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTT
TACCAAGtggtggaaaaggcgggCAATAAAGGAATTTGGCACAAGGACAT
TCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAA
ACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAG
ACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCAC
CGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGAGTTTATCGAAG
AACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCG
TCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGT
GAAGAGCGAGATCAAAAATGTAGAGAAACGAGAGTGTAGaatggcaggga
ggacgagtgATTCTTTGAGTGCGAATATGCGGCTCATTGCTGGGTGCGAG
TATGATGTCTTGCGTCTACCTGCATGCACCACTTGTGCTCATTGCTTCTT
CTCATTGTGCACAATTTAAATGGAGACTTCGCGTAAAGAGACCAcaggag
caggtggaggacaacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTT
TTGTCCTTATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACG
GGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCT
GTCTTGCCGAGAATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTA
GTCTATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGG
GGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggCAATAAAG
GAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCC
TTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCAC
CTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGG
AGCCGGCCAAGGAAATCACCGGCGGACCCTGGTACACGGAACACGAGTTT
GACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAA
GCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAA
ATTCCGGCGTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAAACGA
GAGTGTAGaatggcagggaggacgagtgATTCTTTGAGTGCGAATATGCG
GCTCATTGCTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCATGCACCA
CTTGTGCTCATTGCTTCTTCTCATTGTGCACAATTTAAATGGAGACTTCG
CGTAAAGAGACCAcaggagcaggtggaggacaacATAAGGACGAATCGGG
AAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCCATGCAGAGGGCT
TACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGATACCTGCATTTA
GTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCATCCGATGCATGAA
AACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATCCGAATCTGGCAG
AAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTTTACCAAGtggtg
gaaaaggcgggCAATAAAGGAATTTGGCACAAGGACATTCGGTCACAGAC
CTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCC
GTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTG
TACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTG
GTACACGGAACACGAGTTTGACCACGAGTTTATCGAAGAACTCTCTCGCG
CCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCGTCACTGGGAATT
ATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGTGAAGAGCGAGAT
CAAAAATGTAGAGAAACGAGAGTGTAGaatggcagggaggacgagtgATT
CTTTGAGTGCGAATATGCGGCTCATTGCTGGGTGCGAGTATGATGTCTTG
CGTCTACCTGCATGCACCACTTGTGCTCATTGCTTCTTCTCATTGTGCAC
AATTTAAATGGAGACTTCGCGTAAAGAGACCAcaggagcaggtggaggac
aacATAAGGACGAATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGC
CTCAGCCATGCAGAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTAC
GGAGCGATACCTGCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGA
ATCTCATCCGATGCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCG
GTGGATCCGAATCTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACT
GTTGGTTTACCAAGtggtggaaaaggcgggCAATAAAGGAATTTGGCACA
AGGACATTCGGTCACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATA
TTGAAAAACCTGGAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAG
TAGCAAGACGCGCAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGG
AAATCACCGGCGGACCCTGGTACACGGAACACGAGTTTGACCACGAGTTT
ATCGAAGAACTCTCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAA
ACCTCCGTCACTGGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTT
CCAAGGTGAAGAGCGAGATCAAAAATGTAGAGAAACGAGAGTGTAGaatg
gcagggaggacgagtgATTCTTTGAGTGCGAATATGCGGCTCATTGCTGG
GTGCGAGTATGATGTCTTGCGTCTACCTGCATGCACCACTTGTGCTCATT
GCTTCTTCTCATTGTGCACAATTTAAATGGAGACTTCGCGTAAAGAGACC
AcaggagcaggtggaggacaacATAAGGACGAATCGGGAAATCTCAGAGA
GGAATTTTTGTCCTTATGCCTCAGCCATGCAGAGGGCTTACGCAACGAGC
AACTACGGGAGCATTTTACGGAGCGATACCTGCATTTAGTCCCTATCATT
AACAGCTGTCTTGCCGAGAATCTCATCCGATGCATGAAAACCGAAAGCAA
CGAACTAGTCTATCAAGCGGTGGATCCGAATCTGGCAGAAAAAATGAGAA
ATTTGGGGGCGGAGCAACTGTTGGTTTACCAAGtggtggaaaaggcgggC
AATAAAGGAATTTGGCACAAGGACATTCGGTCACAGACCTCTTTACAGCA
GCCGGCCTTGAAAAAGATATTGAAAAACCTGGAGTCCCGTCAGCTGGTAA
AGAGCACCTCTTCGATCAGTAGCAAGACGCGCAAGCTGTACCTCCTCTAC
GACCTGGAGCCGGCCAAGGAAATCACCGGCGGACCCTGGTACACGGAACA
CGAGTTTGACCACGAGTTTATCGAAGAACTCTCTCGCGCCATTTACCACT
TCATCAAGCAACAGCGCAAACCTCCGTCACTGGGAATTATCGCCGACTAC
GTCCGAAATTCCGGCGTTTCCAAGGTGAAGAGCGAGATCAAAAATGTAGA
GAAACGAGAGTGTAGaatggcagggaggacgagtgATTCTTTGAGTGCGA
ATATGCGGCTCATTGCTGGGTGCGAGTATGATGTCTTGCGTCTACCTGCA
TGCACCACTTGTGCTCATTGCTTCTTCTCATTGTGCACAATTTAAATGGA
GACTTCGCGTAAAGAGACCAcaggagcaggtggaggacaacATAAGGACG
AATCGGGAAATCTCAGAGAGGAATTTTTGTCCTTATGCCTCAGCCATGCA
GAGGGCTTACGCAACGAGCAACTACGGGAGCATTTTACGGAGCGATACCT
GCATTTAGTCCCTATCATTAACAGCTGTCTTGCCGAGAATCTCATCCGAT
GCATGAAAACCGAAAGCAACGAACTAGTCTATCAAGCGGTGGATCCGAAT
CTGGCAGAAAAAATGAGAAATTTGGGGGCGGAGCAACTGTTGGTTTACCA
AGtggtggaaaaggcgggCAATAAAGGAATTTGGCACAAGGACATTCGGT
CACAGACCTCTTTACAGCAGCCGGCCTTGAAAAAGATATTGAAAAACCTG
GAGTCCCGTCAGCTGGTAAAGAGCACCTCTTCGATCAGTAGCAAGACGCG
CAAGCTGTACCTCCTCTACGACCTGGAGCCGGCCAAGGAAATCACCGGCG
GACCCTGGTACACGGAACACGAGTTTGACCACGAGTTTATCGAAGAACTC
TCTCGCGCCATTTACCACTTCATCAAGCAACAGCGCAAACCTCCGTCACT
GGGAATTATCGCCGACTACGTCCGAAATTCCGGCGTTTCCAAGGTGAAGA
GCGAGATCAAAAATGTAGAGAAACGAGAGTGTAGaatggcagggaggacg
agtgATTCTTTGAGTGCGAATATGCGGCTCATTGCTGGGTGCGAGTATGA
TGTCTTGCGTCTACCTGCATGCACCACTTGTGCTCATTGCTTCTTCTCAT
TGTGCACAATTTAA

Synonyms

Publications