Properties
| Property Name | Value |
|---|
| Product | dihydrouridine synthase |
| Orig transcript id | gnl|cribi|Naga_100010g112.6196.mrna |
| Orig protein id | gnl|cribi|Naga_100010g112.6196 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:675508..677784 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3550 ID=rna3550|Name=rna3550|organism=Nannochloropsis gaditana|type=mRNA|length=1555bp
GGGGGCCTGCCTGACATCCCTGCAGGGGCAGCACCAGGCGGCGATTAGCG
CTGTCATGGGCTCCCCTGTGAGCGACAAGCTCCTGGCGACTGCGGGCCAG
GACCGGCGCCTGGTGCTGCACGACATCCTCCGGGGCCGCCCGCTGCGCGA
GGTCAAGGTACGTCCTCGCGACGGGCAGTTGCACGCCCGGCTTTCTGTCT
CACGCTTGCTTCTCGTCCTCCTTCCCCCCTTTTTCCCGCCACCCAGGCCG
TCGCCCCCCTGACCGCCATGGCCTTCGGCCCGGAGGGTGACATGGTCCTG
GTCGGCCTCACCAACGGCGACTGCTCCGTCTACGACTTACGGAAACCGGA
GCTCCCCGTCCGCACCGTCCACGCCTTCCCTGGCACCCCTGTGCGCGCCC
TGGCGGTCCAGCAACAGGCCCGGCGCCGGACCGAAGCGACCTCCCCGCTC
AAGACGAGACCCTTGCCGCAGAGCGCCTCCCCTGGGGCCTTCCCCTCCTC
GGAAGCGAGCAGGACAACGGTTCATGTGCCCTCGCGCAAGGCGACTCAAG
AGGGGCTTGACCCCACCCTGCCGATGGGACCCGCCGGCGACTCCGCCGCC
GTCTCGCTCTCAAGCGCTGCCTCCACCTCGTCCTCCTCCCCCGCCCTCAG
ACACAAGGGCAACGGGTCGGGCCCCGCACCGACACGCCCCCTAGCCCCGC
CCAGTCCCCCCTCCCATCCTCCTGTCGCCCCCTCTTCCTCGCCATCTACT
CGTCCCGCTCTTCCTCCCTTGGCTGCCCCGGGCGGCTCGGGCGCGCAGGA
CTCCTCAGGATCGCTTTCCTCGCTCCCTTTGCCTGCGGCGTATTCAGACG
TGGACCGTCCCACACCAAGTTCAGGTCCCTCTCTGGTCGCTCAACATTGC
CGGGACTCAGGGCCGACCGCCGCGCCCCCTGGGGGTGGCCAGAGCAAGAA
GTCGTCGCAGGACGACGGCATTCCAACCCTCGCGCCCGCCCTCTGCGACC
CCTCCCCGCCCGCCGCCAGCGCTGTGGACGGGCCCAGTCGGGAGGGCATC
AGCACACGTCAGGGCCTCCTGTGGCGGAATAAGCCCTGGCCCTCGGCGTC
TTCCTCCCCATCCTCTGTCGGCGGGTCCACGCCCCTGCGACCGGCTACCC
TCCCCGCGGACGCGACGGTCGCTGCAGCTGCATCCGGGGAAAGTCTCAGC
AGGGAGTCCAGCCCCGAGGCTCGACTCCTTGAGAGCAAGGTGCAGGGCAT
GGTGGACGATCTGCGGGAAGACTTGGCCCGGGACCTTCGCGGCCTCCACT
TGGAAATGATGCGCACGTCCGAGGGGAGCCAGGCGGCGATGCAGCGACTG
GTCTCGGCCATGGAGGCCCTGGTCGAGGAGAACCGAGGGCTACGGAGGGA
GGTGCAAGAGCTGCAGCAGCAGATGGAGATCCCTTTATAAGAGAGGACAT
GTGTAGATTGAAAGAAATGATTACTGTTGGCGGAGAGATAAATGGGAAGA
TAGCGGCCATGGAAAGTAGAAGGAAAGACGTAAAGACCGCTTCCCTACAT
TTTCA back to topprotein sequence of rna3550 >rna3550-protein ID=rna3550-protein|Name=rna3550|organism=Nannochloropsis gaditana|type=polypeptide|length=457bp
MVAFRARSKWRRGWRRLQSDAGSADGLSSSEAFQVYRDLIITRLCSPEWP
LPSPPRRFSFLREGFDETQPVFVLAPMVLQSERAFRLLVQRYGVTLTFSP
MLLARNVLLKRNEDQMDPYVLELLRPCADDTPVIAQLAGSDPLEMLAAAQ
RLWDGGQIAGVDINLGCPQQCAKAGNYGAYLAEREPETAAIMVRLISQEL
GVPVSCKLRNMYDVDTTTRLARRLAGAGASMLTVHGRSPRERDHQSLSDL
DVIRAVREAVPVPVVANGNCRTREDAERAMEYTGCDGFMSAIGLLRNPRL
FGASGAARPAASPAADATAPAVPGHESALSASGTLVDPEEAFSCAWEYLR
LAEAHPPPEVRCVRDHLQALLQGLLQQERVALWNLLGSSQMVLLRQFSEF
LRLSAVECGVALPEGERLVPVLSLGEIKSLHRREINGQEDEEDDSWGMLF
LEGNEME back to topmRNA from alignment at CM002461.1:675508..677784+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3550 ID=rna3550|Name=rna3550|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp|location=Sequence derived from alignment at CM002461.1:675508..677784+ (Nannochloropsis gaditana)
AAGCCTCGCGCGTTAGCTCCCATGTCGAAACTACGCTATCGCTAGCTGTC
GCCACAACGCGGTATGTCATTTTCTATTAACAACTCTGCAAATAACCTTT
CTCTAATGCGATGGCAAAGTCTCCTCCGGTTTCATTCACCGActaggagg
aaggagggaaaagtggCGAACGCAACTTTCGGGCGATGGTCTGGGCTACG
TAAAGTTCCGCCCTAGCCCCTCGAGTTGGTTTGCCCTGTCCgcatcaagg
aggagaacgtgGAAGAAAGTTAATTGAACTGTTCGTGGTGATCTGTATGG
AGTCTGCCATGGTTTGCTTCCGTTGTGACGAGaaagcaggagcaggaaTG
CGCAGCGTCTCATATAGCAAGCAGCAAGCgagagggcaaggcgccccgcc
ccttcttccggAAGCAACAAAAAGGGCGCCGGTCATCCATCACGGCAAGC
ATTTCCATGATGTATGAGCTCAACGCTATGTAATTGTGCAAAGGTATACA
TGGCATGTACACAACACTCCGTGCTATGTAGCGGAACGCGGACAGTGGCA
AAAAAGCTCAACGCGCGAGCAGCCTTGCAGGCCCTTTGACCAACCTCCCG
GCCTATGGCGGCTCAGTGGAGGGATCTCTTACTCCTCTTTTCCATGACAA
AAATGTAAAATCGTTACAATAAAAAGTAGAAGATGACTGTATATGTTTAG
GCACGATCCTCTTCCTTATTTCTCTGGACGATCGAGTGGCAGTCCAATTT
CTcgctcaacctcctccttcccgaggCTCTCAAATTGATGTAAGGACGGT
GTTCACGCACAATTTTCAAGCTTTTTATTCGTTCCATACAGCAGAGTCAT
CATTAATATTGTCACTTACACATTCAGACCTCTTCGGAATTTGAGCACAG
ATGGGATGGTGGCATTCAGGGCCAGATCGAAATGGAGACGTGGGTGGAGA
CGACTTCAAAGTGATGCAGGGTCTGCAGATGGTCTCTCGAGCAGCGAAGC
ATTCCAGGTATATCGCGACCTCATCATAACACGCCTCTGCTCACCTGAAT
GGCCCTTACCCTCGCCGCCGCGTCGCTTCAGTTTCCTACGGGAGGGCTTC
GACGAGACGCAGCCAGTATTCGTGCTGGCTCCAATGGTACTACAATCCGA
GCGGGCGTTTCGTTTGCTTGTGCAACGTTACGGCGTCACTCTCACCTTTT
CTCCAATGCTATTGGCTCGCAACGTCCTTTTGAAGCGCAATGAAGACCAG
ATGGACCCATACGTGCTCGAGCTACTGCGGCCGTGTGCTGATGACACGCC
CGTTATCGCGCAGCTTGCGGGGTCAGACCCACTAGAgatgctggcggcgg
cgcaACGGCTGTGGGATGGGGGTCAAATTGCAGGCGTGGACATAAACCTA
GGATGCCCGCAACAATGCGCCAAAGCCGGGAATTATGGGGCTTACCTTGC
GGAGAGGGAGCCGGAGACGGCCGCGATCATGGTCAGGCTGATTTCGCAAG
AGCTGGGGGTGCCGGTCTCTTGCAAGCTGCGGAACATGTATGACGTGGAC
ACGACCACGCGATTGGCGAGGCGACTagcgggggccggggcgtcGATGCT
GACGGTGCACGGGCGCAGCCCCCGCGAGCGCGACCACCAGTCCCTGAGCG
ACCTGGACGTGATCCGGGCCGTGCGCGAGGCGGTTCCTGTCCCCGTCGTC
GCCAACGGGAACTGCCGCAcgcgggaggacgcggagaggGCCATGGAGTA
CACGGGGTGTGACGGGTTCATGAGCGCCATAGGCTTGCTGCGCAACCCGC
GCCTGTTCGGGGCGTCGGGCGCTGCGAGGCCGGCGGCATCCCCTGCCGCT
GATGCCACCGCTCCAGCCGTCCCAGGCCACGAGTCTGCCTTGTCGGCGAG
TGGCACGCTTGTGGACCCAGAAGaagccttctcctgcgcctggGAGTATC
TACGGCTGGCAGAGGCTCACCCACCGCCTGAGGTCCGGTGCGTGCGCGAC
CATCTCCAGGCATTACTGCAGGGTTTGCTAcagcaggagagggtggcgCT
TTGGAATCTGCTTGGGAGCTCGCAGATGGTCCTTCTGAGACAATTCAGCG
AGTTTCTGCGCCTGAGTGCTGTCGAATGTGGTGTGGCTTTgccagaagga
gagaggttGGTGCCTGTGTTGTCGCTGGGAGAGATCAAATCACTGCATCG
GCGGGAAATAAATggccaggaggacgaggaggacgactcTTGGGGAATGC
TTTTCTTGGAGGGCAATGAAATGGAGG back to topCoding sequence (CDS) from alignment at CM002461.1:675508..677784+ >rna3550 ID=rna3550|Name=rna3550|organism=Nannochloropsis gaditana|type=CDS|length=1372bp|location=Sequence derived from alignment at CM002461.1:675508..677784+ (Nannochloropsis gaditana)
ATGGTGGCATTCAGGGCCAGATCGAAATGGAGACGTGGGTGGAGACGACT
TCAAAGTGATGCAGGGTCTGCAGATGGTCTCTCGAGCAGCGAAGCATTCC
AGGTATATCGCGACCTCATCATAACACGCCTCTGCTCACCTGAATGGCCC
TTACCCTCGCCGCCGCGTCGCTTCAGTTTCCTACGGGAGGGCTTCGACGA
GACGCAGCCAGTATTCGTGCTGGCTCCAATGGTACTACAATCCGAGCGGG
CGTTTCGTTTGCTTGTGCAACGTTACGGCGTCACTCTCACCTTTTCTCCA
ATGCTATTGGCTCGCAACGTCCTTTTGAAGCGCAATGAAGACCAGATGGA
CCCATACGTGCTCGAGCTACTGCGGCCGTGTGCTGATGACACGCCCGTTA
TCGCGCAGCTTGCGGGGTCAGACCCACTAGAgatgctggcggcggcgcaA
CGGCTGTGGGATGGGGGTCAAATTGCAGGCGTGGACATAAACCTAGGATG
CCCGCAACAATGCGCCAAAGCCGGGAATTATGGGGCTTACCTTGCGGAGA
GGGAGCCGGAGACGGCCGCGATCATGGTCAGGCTGATTTCGCAAGAGCTG
GGGGTGCCGGTCTCTTGCAAGCTGCGGAACATGTATGACGTGGACACGAC
CACGCGATTGGCGAGGCGACTagcgggggccggggcgtcGATGCTGACGG
TGCACGGGCGCAGCCCCCGCGAGCGCGACCACCAGTCCCTGAGCGACCTG
GACGTGATCCGGGCCGTGCGCGAGGCGGTTCCTGTCCCCGTCGTCGCCAA
CGGGAACTGCCGCAcgcgggaggacgcggagaggGCCATGGAGTACACGG
GGTGTGACGGGTTCATGAGCGCCATAGGCTTGCTGCGCAACCCGCGCCTG
TTCGGGGCGTCGGGCGCTGCGAGGCCGGCGGCATCCCCTGCCGCTGATGC
CACCGCTCCAGCCGTCCCAGGCCACGAGTCTGCCTTGTCGGCGAGTGGCA
CGCTTGTGGACCCAGAAGaagccttctcctgcgcctggGAGTATCTACGG
CTGGCAGAGGCTCACCCACCGCCTGAGGTCCGGTGCGTGCGCGACCATCT
CCAGGCATTACTGCAGGGTTTGCTAcagcaggagagggtggcgCTTTGGA
ATCTGCTTGGGAGCTCGCAGATGGTCCTTCTGAGACAATTCAGCGAGTTT
CTGCGCCTGAGTGCTGTCGAATGTGGTGTGGCTTTgccagaaggagagag
gttGGTGCCTGTGTTGTCGCTGGGAGAGATCAAATCACTGCATCGGCGGG
AAATAAATggccaggaggacgaggaggacgactcTTGGGGAATGCTTTTC
TTGGAGGGCAATGAAATGGAGG back to top
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