rna3493, rna3493 (mRNA) Nannochloropsis gaditana

Overview
Namerna3493
Unique Namerna3493
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1242
Alignment locationCM002461.1:538715..540469 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g47.6157.mrna
Orig protein idgnl|cribi|Naga_100010g47.6157
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:538715..540469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g47gene3364Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3493rna3493-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27187.1cds3484Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3493 ID=rna3493|Name=rna3493|organism=Nannochloropsis gaditana|type=mRNA|length=1242bp
AGTAGCACAATGTCACTCATGTGACAGGGCTTTCAAGGAGGGTGAGATCC
ATTTACTGAACGCATATCCCCTCCTGAGAAAGTCAACAACTTTGCACGAG
CACTTGTACATATGCCTCCTGCACTCTTGTTGTTTTTTCCAAGGACTAAG
CAAATTCTCCTCTCTCCCAATGCGTATGCTCATGTGCGTTTATAAACAAT
CATCTGCATTTCGATGGTTAAATTCAACTCTACAAATCTCAAACAGGCAC
GGGGGCACACTCAATTTTCATTCGATGTCTCAAGTACCCTGGACCCGAAT
TCGTGAGTTCAAAGAGGAGCAGGAAAGGAAAAAACGACATAAAGTGGAGT
CCGGACAAGAAGCTTCTCGGTCTCAACGTGACGTTCTTCAACATGAAACA
AGAAGTCAGGGTCAAGAGACGGAGGAGAACTCATTTCTGGGGCGTTTTAA
AGGAACTTATTTCAAGGAGCGCCTTCTCTTTGGTGGCGTGGTGGGCAGCG
TCACTGGCGCGTTTTTCGGAGGACTAGATGCAGTACAGGGTATTAAAAAG
GGTAAAGCCTTTGGCGTGGTGTTGAACAACTTTCAAGCTAAAGTAAAATT
TTCTGCCGAACACGTCGGCAGTGCTGCGGCTATCTTTTCCATCTTCTATT
CGTCCTATCAGGGCATAAAATACATAACGAAGGTGGCTCGAAGTGAATGT
GATTGGGGAAATCCCGCCACAGCAGCTTTGTGTACCATACCACCTCTCCT
GATCTCAACAGCGTTTCGTCGCAATGTACCGTATGCCGTCCTATTGATTG
GTATGGATGTTATCAGCGACGCGTCGTCATCGTCTCCTTCCAGTGGCACC
CGTACGTCCTAAGCCATGCACGCGATGTCTTCTTTCGTGCGAATACCAGG
AAATATAGTACAAGAATTTCAAAGAAAAATTACGCGTGACAGGCCTTCCA
GGGCAAAAAGACTCCCACACTCGTGGATTCGCACGTTTCATTCTTCAGAT
CACGGCCAATCTTGACTTAGAGCTCCTCTCTCGGACCTTTTTTAAGTTCA
TCAAGAGGAGCACGCAAAGCTTTAGCAAGGGAGGCTGTGACAATGCGTTT
ACCTGTAAATGGCCTCCGGGAATGCATCACGGTGTGATTGTCAATCAATA
TGAAGTCACCCCGACACCATGGAAATGCCACTGCAAGCTCCTCCATTAGC
CTACCAGCTACCGTTATGAGGCTGGGATCAAGGTAGCTCCCG
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protein sequence of rna3493

>rna3493-protein ID=rna3493-protein|Name=rna3493|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEE
QERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKE
RLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVG
SAAAIFSMA
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mRNA from alignment at CM002461.1:538715..540469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3493 ID=rna3493|Name=rna3493|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp|location=Sequence derived from alignment at CM002461.1:538715..540469+ (Nannochloropsis gaditana)
AGTAGCACAATGTCACTCATGTGACAGGGCTTTCAAGGAGGGTGAGATCC
ATTTACTGAACGCATATCCCCTCCTGAGAAAGTCAACAACTTTGCACGAG
CACTTGTACATATGCCTCCTGCACTCTTGTTGTTTTTTCCAAGGACTAAG
CAaattctcctctctcccaatGCGTATGCTCATGTGCGTTTATAAACAAT
CATCTGCATTTCGATGGTTAAATTCAACTCTACAAATCTCAAACAGGCAC
GGGGGCACACTCAATTTTCATTCGATGTCTCAAGTACCCTGGACCCGAAT
TCGTGAGTTcaaagaggagcaggaaaggaaaaaacgaCATAAAGTGGAGT
CCGGACAAGAAGCTTCTCGGTCTCAACGTGACGTTCTTCAACATGAAACA
AGAAGTCAGGGTcaagagacggaggagaacTCATTTCTGGGGCGTTTTAA
AGGAACTTATTTCAAGGAGCGCCTTCTCTTTGGTGGCGTGGTGGGCAGCG
TCACTGGCGCGTTTTTCGGAGGACGTGAGTACATGCTACCGTTGTGTACA
AACAAAATAGCCCAAGGACGAATCAACGTAATCGCAGCTATTGAATATAT
GAAAAGACATATGGACTCGTGTGAAGCAGACCCCTTCTGTGTGTATCTCA
CTGTTTGCATGGCTTACACTGCATGGCTAGAAATACTACAACAATAAAAC
AAGAACGAATAGCGAGTAGTTGAGACATTTGTGAGCAGTATGGTTTCTAT
AAGCCGAAAGTTATCTGGACTATTTGTAAGGATGATAAGCCTTGTTGTAT
CGGGACCTTCTGTTTCCTGCTTTGTTGAAAAGCTGACTCACCCTCGTGCT
AAAAGTTGAATGTCCGCTTATCCCTACAGTAGATGCAGTACAGGGTATTA
AAAAGGGTAAAGCCTTTGGCGTGGTGTTGAACAACTTTCAAGCTAAAGTA
AAATTTTCTGCCGAACACGTCGGCAGTGCTGCGGCTATCTTTTCCATGTA
AGTGATAGTAACATATCTGACTTGACCCAGCTACAACGCTTTCATTCGAC
TGAAACTCCAAACATATAATTGGAACGCTATCGTTACATATGGCATCTTA
TACAAATTTAACCTTGCTATGTCCACCTGTCTGCGGTCTCCCGCTTCTCT
TACAGCTTCTATTCGTCCTATCAGGGCATAAAATACATAACGAAGGTGGC
TCGAAGTGAATGTGATTGGGGAAATCCCGCCACAGCAGCTTTGTGTACCA
TACCACCTCTCCTGATCTCAACAGCGTTTCGTCGCAATGTACCGTATGCC
GTCCTATTGATTGGTATGGATGTTATCAGCGACGCGTCgtcatcgtctcc
ttccagTGGCACCCGTACGTCCTAAGCCATGCACGCGATGTCTTCTTTCG
TGCGAATACCAGGAAATATAGTACAAGAATTTCAAAGAAAAATTACGCGT
GACAGGCCTTCCAGGGCAAAAAGACTCCCACACTCGTGGATTCGCACGTT
TCATTCTTCAGATCACGGCCAATCTTGACTTAGAGCTCCTCTCTCGGACC
TTTTTTAAGTTCATCAAGAGGAGCACGCAAAGCTTTAGCAAGGGAGGCTG
TGACAATGCGTTTACCTGTAAATGGCCTCCGGGAATGCATCACGGTGTGA
TTGTCAATCAATATGAAGTCACCCCGACACCATGGAAATGCCACTGCAAG
CTCCTCCATTAGCCTACCAGCTACCGTTATGAGGCTGGGATCAAGGTAGC
TCCCG
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Coding sequence (CDS) from alignment at CM002461.1:538715..540469+

>rna3493 ID=rna3493|Name=rna3493|organism=Nannochloropsis gaditana|type=CDS|length=1440bp|location=Sequence derived from alignment at CM002461.1:538715..540469+ (Nannochloropsis gaditana)
atGCGTATGCTCATGTGCGTTTATAAACAATCATCTGCATTTCGATGGTT
AAATTCAACTCTACAAATCTCAAACAGGCACGGGGGCACACTCAATTTTC
ATTCGATGTCTCAAGTACCCTGGACCCGAATTCGTGAGTTcaaagaggag
caggaaaggaaaaaacgaCATAAAGTGGAGTCCGGACAAGAAGCTTCTCG
GTCTCAACGTGACGTTCTTCAACATGAAACAAGAAGTCAGGGTcaagaga
cggaggagaacTCATTTCTGGGGCGTTTTAAAGGAACTTATTTCAAGGAG
CGCCTTCTCTTTGGTGGCGTGGTGGGCAGCGTCACTGGCGCGTTTTTCGG
AGGACTAGATGCAGTACAGGGTATTAAAAAGGGTAAAGCCTTTGGCGTGG
TGTTGAACAACTTTCAAGCTAAAGTAAAATTTTCTGCCGAACACGTCGGC
AGTGCTGCGGCTATCTTTTCCATGGCATAAatGCGTATGCTCATGTGCGT
TTATAAACAATCATCTGCATTTCGATGGTTAAATTCAACTCTACAAATCT
CAAACAGGCACGGGGGCACACTCAATTTTCATTCGATGTCTCAAGTACCC
TGGACCCGAATTCGTGAGTTcaaagaggagcaggaaaggaaaaaacgaCA
TAAAGTGGAGTCCGGACAAGAAGCTTCTCGGTCTCAACGTGACGTTCTTC
AACATGAAACAAGAAGTCAGGGTcaagagacggaggagaacTCATTTCTG
GGGCGTTTTAAAGGAACTTATTTCAAGGAGCGCCTTCTCTTTGGTGGCGT
GGTGGGCAGCGTCACTGGCGCGTTTTTCGGAGGACTAGATGCAGTACAGG
GTATTAAAAAGGGTAAAGCCTTTGGCGTGGTGTTGAACAACTTTCAAGCT
AAAGTAAAATTTTCTGCCGAACACGTCGGCAGTGCTGCGGCTATCTTTTC
CATGGCATAAatGCGTATGCTCATGTGCGTTTATAAACAATCATCTGCAT
TTCGATGGTTAAATTCAACTCTACAAATCTCAAACAGGCACGGGGGCACA
CTCAATTTTCATTCGATGTCTCAAGTACCCTGGACCCGAATTCGTGAGTT
caaagaggagcaggaaaggaaaaaacgaCATAAAGTGGAGTCCGGACAAG
AAGCTTCTCGGTCTCAACGTGACGTTCTTCAACATGAAACAAGAAGTCAG
GGTcaagagacggaggagaacTCATTTCTGGGGCGTTTTAAAGGAACTTA
TTTCAAGGAGCGCCTTCTCTTTGGTGGCGTGGTGGGCAGCGTCACTGGCG
CGTTTTTCGGAGGACTAGATGCAGTACAGGGTATTAAAAAGGGTAAAGCC
TTTGGCGTGGTGTTGAACAACTTTCAAGCTAAAGTAAAATTTTCTGCCGA
ACACGTCGGCAGTGCTGCGGCTATCTTTTCCATGGCATAA
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Synonyms
Publications