EWM27187.1, cds3484 (CDS) Nannochloropsis gaditana

Overview
NameEWM27187.1
Unique Namecds3484
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:538884..539238 +
Alignment locationCM002461.1:539594..539711 +
Alignment locationCM002461.1:539889..539895 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27187.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g47.6157.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:538884..539238 +
CM002461.1supercontigCM002461.1:539594..539711 +
CM002461.1supercontigCM002461.1:539889..539895 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27187.1 vs. NCBI_GenBank
Match: gi|585109367|gb|EWM27187.1| (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 325.479 bits (833), Expect = 1.022e-112
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 
Query:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSMA 159
            MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSMA
Sbjct:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSMA 159
[Close]
BLAST of EWM27187.1 vs. NCBI_GenBank
Match: gi|585109368|gb|EWM27188.1| (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 325.479 bits (833), Expect = 9.880e-112
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0 
Query:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSM 158
            MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFS+
Sbjct:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSI 158
[Close]
BLAST of EWM27187.1 vs. NCBI_GenBank
Match: gi|585109369|gb|EWM27189.1| (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 250.366 bits (638), Expect = 7.638e-83
Identity = 126/155 (81.29%), Postives = 134/155 (86.45%), Query Frame = 0 
Query:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGK-AFGVVLNNFQAKVKFSAEHVGSAAA 154
            MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGG + +  +   K A G +  N  A +++   H+ S  A
Sbjct:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGREYMLPLCTNKIAQGRI--NVIAAIEYMKRHMDSCEA 153
The following BLAST results are available for this feature:
BLAST of EWM27187.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109367|gb|EWM27187.1|1.022e-112100.00hypothetical protein Naga_100010g47 [Nannochlorops... [more]
gi|585109368|gb|EWM27188.1|9.880e-11299.37hypothetical protein Naga_100010g47 [Nannochlorops... [more]
gi|585109369|gb|EWM27189.1|7.638e-8381.29hypothetical protein Naga_100010g47 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3493rna3493Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications