rna3492, rna3492 (mRNA) Nannochloropsis gaditana

Overview
Namerna3492
Unique Namerna3492
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1597
Alignment locationCM002461.1:538715..540469 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g47.6158.mrna
Orig protein idgnl|cribi|Naga_100010g47.6158
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:538715..540469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g47gene3364Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3492rna3492-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27188.1cds3483Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3492 ID=rna3492|Name=rna3492|organism=Nannochloropsis gaditana|type=mRNA|length=1597bp
AGTAGCACAATGTCACTCATGTGACAGGGCTTTCAAGGAGGGTGAGATCC
ATTTACTGAACGCATATCCCCTCCTGAGAAAGTCAACAACTTTGCACGAG
CACTTGTACATATGCCTCCTGCACTCTTGTTGTTTTTTCCAAGGACTAAG
CAAATTCTCCTCTCTCCCAATGCGTATGCTCATGTGCGTTTATAAACAAT
CATCTGCATTTCGATGGTTAAATTCAACTCTACAAATCTCAAACAGGCAC
GGGGGCACACTCAATTTTCATTCGATGTCTCAAGTACCCTGGACCCGAAT
TCGTGAGTTCAAAGAGGAGCAGGAAAGGAAAAAACGACATAAAGTGGAGT
CCGGACAAGAAGCTTCTCGGTCTCAACGTGACGTTCTTCAACATGAAACA
AGAAGTCAGGGTCAAGAGACGGAGGAGAACTCATTTCTGGGGCGTTTTAA
AGGAACTTATTTCAAGGAGCGCCTTCTCTTTGGTGGCGTGGTGGGCAGCG
TCACTGGCGCGTTTTTCGGAGGACGTGAGTACATGCTACCGTTGTGTACA
AACAAAATAGCCCAAGGACGAATCAACGTAATCGCAGCTATTGAATATAT
GAAAAGACATATGGACTCGTGTGAAGCAGACCCCTTCTGTGTGTATCTCA
CTGTTTGCATGGCTTACACTGCATGGCTAGAAATACTACAACAATAAAAC
AAGAACGAATAGCGAGTAGTTGAGACATTTGTGAGCAGTATGGTTTCTAT
AAGCCGAAAGTTATCTGGACTATTTGTAAGGATGATAAGCCTTGTTGTAT
CGGGACCTTCTGTTTCCTGCTTTGTTGAAAAGCTGACTCACCCTCGTGCT
AAAAGTTGAATGTCCGCTTATCCCTACAGTAGATGCAGTACAGGGTATTA
AAAAGGGTAAAGCCTTTGGCGTGGTGTTGAACAACTTTCAAGCTAAAGTA
AAATTTTCTGCCGAACACGTCGGCAGTGCTGCGGCTATCTTTTCCATCTT
CTATTCGTCCTATCAGGGCATAAAATACATAACGAAGGTGGCTCGAAGTG
AATGTGATTGGGGAAATCCCGCCACAGCAGCTTTGTGTACCATACCACCT
CTCCTGATCTCAACAGCGTTTCGTCGCAATGTACCGTATGCCGTCCTATT
GATTGGTATGGATGTTATCAGCGACGCGTCGTCATCGTCTCCTTCCAGTG
GCACCCGTACGTCCTAAGCCATGCACGCGATGTCTTCTTTCGTGCGAATA
CCAGGAAATATAGTACAAGAATTTCAAAGAAAAATTACGCGTGACAGGCC
TTCCAGGGCAAAAAGACTCCCACACTCGTGGATTCGCACGTTTCATTCTT
CAGATCACGGCCAATCTTGACTTAGAGCTCCTCTCTCGGACCTTTTTTAA
GTTCATCAAGAGGAGCACGCAAAGCTTTAGCAAGGGAGGCTGTGACAATG
CGTTTACCTGTAAATGGCCTCCGGGAATGCATCACGGTGTGATTGTCAAT
CAATATGAAGTCACCCCGACACCATGGAAATGCCACTGCAAGCTCCTCCA
TTAGCCTACCAGCTACCGTTATGAGGCTGGGATCAAGGTAGCTCCCG
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protein sequence of rna3492

>rna3492-protein ID=rna3492-protein|Name=rna3492|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEE
QERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKE
RLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVG
SAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFR
RNVPYAVLLIGMDVISDASSSSPSSGTRTS
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mRNA from alignment at CM002461.1:538715..540469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3492 ID=rna3492|Name=rna3492|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp|location=Sequence derived from alignment at CM002461.1:538715..540469+ (Nannochloropsis gaditana)
AGTAGCACAATGTCACTCATGTGACAGGGCTTTCAAGGAGGGTGAGATCC
ATTTACTGAACGCATATCCCCTCCTGAGAAAGTCAACAACTTTGCACGAG
CACTTGTACATATGCCTCCTGCACTCTTGTTGTTTTTTCCAAGGACTAAG
CAaattctcctctctcccaatGCGTATGCTCATGTGCGTTTATAAACAAT
CATCTGCATTTCGATGGTTAAATTCAACTCTACAAATCTCAAACAGGCAC
GGGGGCACACTCAATTTTCATTCGATGTCTCAAGTACCCTGGACCCGAAT
TCGTGAGTTcaaagaggagcaggaaaggaaaaaacgaCATAAAGTGGAGT
CCGGACAAGAAGCTTCTCGGTCTCAACGTGACGTTCTTCAACATGAAACA
AGAAGTCAGGGTcaagagacggaggagaacTCATTTCTGGGGCGTTTTAA
AGGAACTTATTTCAAGGAGCGCCTTCTCTTTGGTGGCGTGGTGGGCAGCG
TCACTGGCGCGTTTTTCGGAGGACGTGAGTACATGCTACCGTTGTGTACA
AACAAAATAGCCCAAGGACGAATCAACGTAATCGCAGCTATTGAATATAT
GAAAAGACATATGGACTCGTGTGAAGCAGACCCCTTCTGTGTGTATCTCA
CTGTTTGCATGGCTTACACTGCATGGCTAGAAATACTACAACAATAAAAC
AAGAACGAATAGCGAGTAGTTGAGACATTTGTGAGCAGTATGGTTTCTAT
AAGCCGAAAGTTATCTGGACTATTTGTAAGGATGATAAGCCTTGTTGTAT
CGGGACCTTCTGTTTCCTGCTTTGTTGAAAAGCTGACTCACCCTCGTGCT
AAAAGTTGAATGTCCGCTTATCCCTACAGTAGATGCAGTACAGGGTATTA
AAAAGGGTAAAGCCTTTGGCGTGGTGTTGAACAACTTTCAAGCTAAAGTA
AAATTTTCTGCCGAACACGTCGGCAGTGCTGCGGCTATCTTTTCCATGTA
AGTGATAGTAACATATCTGACTTGACCCAGCTACAACGCTTTCATTCGAC
TGAAACTCCAAACATATAATTGGAACGCTATCGTTACATATGGCATCTTA
TACAAATTTAACCTTGCTATGTCCACCTGTCTGCGGTCTCCCGCTTCTCT
TACAGCTTCTATTCGTCCTATCAGGGCATAAAATACATAACGAAGGTGGC
TCGAAGTGAATGTGATTGGGGAAATCCCGCCACAGCAGCTTTGTGTACCA
TACCACCTCTCCTGATCTCAACAGCGTTTCGTCGCAATGTACCGTATGCC
GTCCTATTGATTGGTATGGATGTTATCAGCGACGCGTCgtcatcgtctcc
ttccagTGGCACCCGTACGTCCTAAGCCATGCACGCGATGTCTTCTTTCG
TGCGAATACCAGGAAATATAGTACAAGAATTTCAAAGAAAAATTACGCGT
GACAGGCCTTCCAGGGCAAAAAGACTCCCACACTCGTGGATTCGCACGTT
TCATTCTTCAGATCACGGCCAATCTTGACTTAGAGCTCCTCTCTCGGACC
TTTTTTAAGTTCATCAAGAGGAGCACGCAAAGCTTTAGCAAGGGAGGCTG
TGACAATGCGTTTACCTGTAAATGGCCTCCGGGAATGCATCACGGTGTGA
TTGTCAATCAATATGAAGTCACCCCGACACCATGGAAATGCCACTGCAAG
CTCCTCCATTAGCCTACCAGCTACCGTTATGAGGCTGGGATCAAGGTAGC
TCCCG
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Coding sequence (CDS) from alignment at CM002461.1:538715..540469+

>rna3492 ID=rna3492|Name=rna3492|organism=Nannochloropsis gaditana|type=CDS|length=2079bp|location=Sequence derived from alignment at CM002461.1:538715..540469+ (Nannochloropsis gaditana)
atGCGTATGCTCATGTGCGTTTATAAACAATCATCTGCATTTCGATGGTT
AAATTCAACTCTACAAATCTCAAACAGGCACGGGGGCACACTCAATTTTC
ATTCGATGTCTCAAGTACCCTGGACCCGAATTCGTGAGTTcaaagaggag
caggaaaggaaaaaacgaCATAAAGTGGAGTCCGGACAAGAAGCTTCTCG
GTCTCAACGTGACGTTCTTCAACATGAAACAAGAAGTCAGGGTcaagaga
cggaggagaacTCATTTCTGGGGCGTTTTAAAGGAACTTATTTCAAGGAG
CGCCTTCTCTTTGGTGGCGTGGTGGGCAGCGTCACTGGCGCGTTTTTCGG
AGGACTAGATGCAGTACAGGGTATTAAAAAGGGTAAAGCCTTTGGCGTGG
TGTTGAACAACTTTCAAGCTAAAGTAAAATTTTCTGCCGAACACGTCGGC
AGTGCTGCGGCTATCTTTTCCATCTTCTATTCGTCCTATCAGGGCATAAA
ATACATAACGAAGGTGGCTCGAAGTGAATGTGATTGGGGAAATCCCGCCA
CAGCAGCTTTGTGTACCATACCACCTCTCCTGATCTCAACAGCGTTTCGT
CGCAATGTACCGTATGCCGTCCTATTGATTGGTATGGATGTTATCAGCGA
CGCGTCgtcatcgtctccttccagTGGCACCCGTACGTCCTAAatGCGTA
TGCTCATGTGCGTTTATAAACAATCATCTGCATTTCGATGGTTAAATTCA
ACTCTACAAATCTCAAACAGGCACGGGGGCACACTCAATTTTCATTCGAT
GTCTCAAGTACCCTGGACCCGAATTCGTGAGTTcaaagaggagcaggaaa
ggaaaaaacgaCATAAAGTGGAGTCCGGACAAGAAGCTTCTCGGTCTCAA
CGTGACGTTCTTCAACATGAAACAAGAAGTCAGGGTcaagagacggagga
gaacTCATTTCTGGGGCGTTTTAAAGGAACTTATTTCAAGGAGCGCCTTC
TCTTTGGTGGCGTGGTGGGCAGCGTCACTGGCGCGTTTTTCGGAGGACTA
GATGCAGTACAGGGTATTAAAAAGGGTAAAGCCTTTGGCGTGGTGTTGAA
CAACTTTCAAGCTAAAGTAAAATTTTCTGCCGAACACGTCGGCAGTGCTG
CGGCTATCTTTTCCATCTTCTATTCGTCCTATCAGGGCATAAAATACATA
ACGAAGGTGGCTCGAAGTGAATGTGATTGGGGAAATCCCGCCACAGCAGC
TTTGTGTACCATACCACCTCTCCTGATCTCAACAGCGTTTCGTCGCAATG
TACCGTATGCCGTCCTATTGATTGGTATGGATGTTATCAGCGACGCGTCg
tcatcgtctccttccagTGGCACCCGTACGTCCTAAatGCGTATGCTCAT
GTGCGTTTATAAACAATCATCTGCATTTCGATGGTTAAATTCAACTCTAC
AAATCTCAAACAGGCACGGGGGCACACTCAATTTTCATTCGATGTCTCAA
GTACCCTGGACCCGAATTCGTGAGTTcaaagaggagcaggaaaggaaaaa
acgaCATAAAGTGGAGTCCGGACAAGAAGCTTCTCGGTCTCAACGTGACG
TTCTTCAACATGAAACAAGAAGTCAGGGTcaagagacggaggagaacTCA
TTTCTGGGGCGTTTTAAAGGAACTTATTTCAAGGAGCGCCTTCTCTTTGG
TGGCGTGGTGGGCAGCGTCACTGGCGCGTTTTTCGGAGGACTAGATGCAG
TACAGGGTATTAAAAAGGGTAAAGCCTTTGGCGTGGTGTTGAACAACTTT
CAAGCTAAAGTAAAATTTTCTGCCGAACACGTCGGCAGTGCTGCGGCTAT
CTTTTCCATCTTCTATTCGTCCTATCAGGGCATAAAATACATAACGAAGG
TGGCTCGAAGTGAATGTGATTGGGGAAATCCCGCCACAGCAGCTTTGTGT
ACCATACCACCTCTCCTGATCTCAACAGCGTTTCGTCGCAATGTACCGTA
TGCCGTCCTATTGATTGGTATGGATGTTATCAGCGACGCGTCgtcatcgt
ctccttccagTGGCACCCGTACGTCCTAA
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Synonyms
Publications