EWM27188.1, cds3483 (CDS) Nannochloropsis gaditana

Overview
NameEWM27188.1
Unique Namecds3483
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:538884..539238 +
Alignment locationCM002461.1:539594..539711 +
Alignment locationCM002461.1:539870..540089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27188.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g47.6158.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:538884..539238 +
CM002461.1supercontigCM002461.1:539594..539711 +
CM002461.1supercontigCM002461.1:539870..540089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|585109368|gb|EWM27188.1| (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 477.633 bits (1228), Expect = 1.079e-170
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISDASSSSPSSGTRTS 230
            MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISDASSSSPSSGTRTS
Sbjct:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISDASSSSPSSGTRTS 230          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|585109367|gb|EWM27187.1| (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 325.479 bits (833), Expect = 1.429e-111
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSI 158
            MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFS+
Sbjct:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSM 158          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|585109369|gb|EWM27189.1| (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 250.751 bits (639), Expect = 1.034e-81
Identity = 126/155 (81.29%), Postives = 134/155 (86.45%), Query Frame = 0
Query:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGK-AFGVVLNNFQAKVKFSAEHVGSAAA 154
            MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGG + +  +   K A G +  N  A +++   H+ S  A
Sbjct:    1 MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGREYMLPLCTNKIAQGRI--NVIAAIEYMKRHMDSCEA 153          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|219121535|ref|XP_002181120.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407106|gb|EEC47043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 70.4774 bits (171), Expect = 2.778e-11
Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 0
Query:   39 VPWTRIRE----FKEEQER----KKRHKVESG--QEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKERLL----FGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQ-AKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMD 213
            +PW RI +     +E++ER     +R  +E    Q+   S++ V+  E     Q T+        K  Y    LL    FGG +G++TGA FG +D   G++  +   V+ N    AK ++  +    +A +F +F+  +  +KY  KV     D G    A   ++  L    A+R N+PYA++L+ MD
Sbjct:   10 IPWDRIPQTGTNLEEQKERIFRELQRETIEDEFLQQDRHSEQPVVTGE-----QSTDSAKPFTSNKVPYSNMELLRQAAFGGCLGTITGAVFGFMD---GMRTAQESSVLQNASNVAKGRYLMQGTTRSATLFGVFFGGFHILKYGLKVTLDPGDVGEIGVAGAASVGTLFARPAWRPNIPYALMLVAMD 191          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|813171532|ref|XP_012204521.1| (hypothetical protein SPRG_20819 [Saprolegnia parasitica CBS 223.65] >gi|813225714|ref|XP_012211934.1| hypothetical protein SPRG_17212 [Saprolegnia parasitica CBS 223.65] >gi|641521956|gb|KDO17363.1| hypothetical protein SPRG_17212 [Saprolegnia parasitica CBS 223.65] >gi|641530670|gb|KDO24782.1| hypothetical protein SPRG_20819 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.5514 bits (166), Expect = 6.504e-11
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 0
Query:   93 FKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISD 217
            F  T  + +L+FGG+VG  TG  FG +DAV+  +    +G +  N QA    S    G    +FS F+ SYQGIK   +  R   D+ N   AAL +  P +     R N  YA LL+G+D+  +
Sbjct:   30 FDYTTLRHKLVFGGLVGLSTGLTFGSVDAVR--QAHTQYGRI--NAQAMRSIS-RTAGICGMLFSGFFFSYQGIKNTMEQLRGAEDFANVGVAALLSGAPFIRHPVMRTNAMYAALLVGLDLFHE 149          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|669151334|ref|XP_008611229.1| (hypothetical protein SDRG_07187 [Saprolegnia diclina VS20] >gi|530737237|gb|EQC35479.1| hypothetical protein SDRG_07187 [Saprolegnia diclina VS20])

HSP 1 Score: 67.781 bits (164), Expect = 1.012e-10
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 0
Query:   93 FKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISD 217
            F  T  + +L+FGG+VG  TG  FG +DAV+  +    +G +  N QA ++  +   G    +FS F+ SYQGIK   +  R   D+ N   AAL +  P +     R N  YA LL+G+D+  +
Sbjct:   28 FNYTTLRHKLVFGGLVGLSTGLTFGSVDAVR--QAHTQYGRI--NAQA-IRSISRTAGICGMLFSGFFFSYQGIKTTMEQLRGAEDFANVGVAALLSGAPFIRHPVMRTNAMYAALLVGLDLFHE 147          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|1072230409|gb|OEU15142.1| (hypothetical protein FRACYDRAFT_269232 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.6254 bits (161), Expect = 8.503e-10
Identity = 48/177 (27.12%), Postives = 83/177 (46.89%), Query Frame = 0
Query:   44 IREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETE-------ENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMD 213
            IR+ + E +RK++ +       + S  D +   +  Q            + +F  ++ G  FK  L FGG +GS+TG+ FG +D ++   + +      N   AK K+  E    +A +F +F+  +  +KY  +VA    D+     A   ++  L+ +  FR  VPYA +LI MD
Sbjct:   32 IRDLQREADRKEKSQALEQHRLNSSSSDTIGLSSNEQTSSLSSTSTSMMQTNFSFQW-GELFKN-LAFGGCIGSITGSVFGFMDGMRMAGQSEVLKNASN--VAKGKYLMEGTTRSATMFGVFFGGFHVVKYGVRVAFDPGDYPEIGLAGAISLGGLMYNPNFRPAVPYATMLIFMD 204          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|325186013|emb|CCA20516.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 64.3142 bits (155), Expect = 1.832e-9
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 0
Query:  100 ERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARS-ECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMD 213
             RLLFG +VG  TGA FG +D ++  +K         N  AK   +A + G     FS F+S++QG+K   +  R+   D  N   A      P L  + FR+N+PYA++L+ +D
Sbjct:   44 NRLLFGALVGFPTGAVFGAIDGIRTFQKCGKLSFHATNAIAK---TAVYTGGC---FSSFFSTFQGVKAAVEFNRNGRQDAINIGVATTAATIPFLKVSYFRKNIPYAMMLVALD 152          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|673036214|ref|XP_008872068.1| (hypothetical protein H310_08185 [Aphanomyces invadans] >gi|673036216|ref|XP_008872069.1| hypothetical protein, variant [Aphanomyces invadans] >gi|574472507|gb|ETV99512.1| hypothetical protein H310_08185 [Aphanomyces invadans] >gi|574472508|gb|ETV99513.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 61.2326 bits (147), Expect = 2.993e-8
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = 0
Query:   93 FKGTYFKERLLFGGVVGSVTGAFFGGLDAVQG--IKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISD 217
            F     + ++LFGG+VGS TGA FG + A Q    K G        N +A +  +A   G+  A+F  F+ +YQG+K   +  R E D+ N   A      P   +  FR ++ YA LLI +D   +
Sbjct:   38 FNMELLRNKVLFGGLVGSTTGATFGFVGAFQSHHTKHGSV------NSKALLG-AARTAGTTGAVFGAFFLAYQGVKTTIEQLRGEEDFLNAGAAVAIAGLPFYRTITFRSHMGYAGLLIALDYFHE 157          
BLAST of EWM27188.1 vs. NCBI_GenBank
Match: gi|698801118|ref|XP_009833588.1| (hypothetical protein H257_09159 [Aphanomyces astaci] >gi|574111180|gb|ETV76676.1| hypothetical protein H257_09159 [Aphanomyces astaci])

HSP 1 Score: 60.077 bits (144), Expect = 7.108e-8
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 0
Query:   98 FKERLLFGGVVGSVTGAFFGGLDAVQG--IKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISD 217
             + +++FGG+VGS TGA FG + A Q    K G        N QA +  +A   G+  A+F  F+ +YQG+K   +  R + D+ N   A      P   +  FR ++ YA LL+ +D   D
Sbjct:   41 LRNKVIFGGLVGSTTGATFGFVGAFQNHHTKHGSV------NSQALLG-AARTAGTTGAVFGAFFLAYQGLKTTIEQLRGDEDFLNAGAAVAVAGLPFYRTITFRSHMGYAGLLVALDYFHD 155          
The following BLAST results are available for this feature:
BLAST of EWM27188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109368|gb|EWM27188.1|1.079e-170100.00hypothetical protein Naga_100010g47 [Nannochlorops... [more]
gi|585109367|gb|EWM27187.1|1.429e-11199.37hypothetical protein Naga_100010g47 [Nannochlorops... [more]
gi|585109369|gb|EWM27189.1|1.034e-8181.29hypothetical protein Naga_100010g47 [Nannochlorops... [more]
gi|219121535|ref|XP_002181120.1|2.778e-1128.42predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|813171532|ref|XP_012204521.1|6.504e-1136.00hypothetical protein SPRG_20819 [Saprolegnia paras... [more]
gi|669151334|ref|XP_008611229.1|1.012e-1035.20hypothetical protein SDRG_07187 [Saprolegnia dicli... [more]
gi|1072230409|gb|OEU15142.1|8.503e-1027.12hypothetical protein FRACYDRAFT_269232 [Fragilario... [more]
gi|325186013|emb|CCA20516.1|1.832e-934.78conserved hypothetical protein [Albugo laibachii N... [more]
gi|673036214|ref|XP_008872068.1|2.993e-833.07hypothetical protein H310_08185 [Aphanomyces invad... [more]
gi|698801118|ref|XP_009833588.1|7.108e-832.79hypothetical protein H257_09159 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3492rna3492Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications