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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100038g16.7694.mrna |
| Orig protein id | gnl|cribi|Naga_100038g16.7694 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:379179..383122 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3420 ID=rna3420|Name=rna3420|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp
CATCAGACAGGCATGCGGTGTCCAAAATAGTACTGTACAGGTTCCCGGCG
GACTATCGGCCTCACAAAGATGTGGTGGCGGGGGAGTGCTGCACTTCTTA
GTCCGCCCTCCCTCCTCTCTCTCCTCCTCCTCCTCCTCCTCTTTCATCGG
CCATCCTATGCGCTTCACATACCGAACAAAGGGGGGAAGAAGAGTCCACC
TGGCCTCCCGCGGTCTTTCGCCCTGTCATACAGGCGTCTAATAAAGGAAT
GGAGGGGTATCATGGCTGAGGGTTTGGTGCTTATGGACTCCGGCGAAGGC
AATTGCTCTCTCAGCAACAACACGGAGCATATACGGCTGGCACCCTGTCG
AGGCAATCTGCATGAATGGCATTTCTCGGTGGCTGGGCCTCCGGGCAGCG
TGTATGAGGGGGGCATCTACCACGGACGCGTCATTCTGCCTGCCAACTAC
CCACAAACTGCACCGCGCTTGCAAATGCTGAACCCAAGCGGGCGCTTCGA
GGTAGGCGCCGACATTTGTCTCTCTGCCACATCCTTCCATCAAGAAACCT
GGCAGCCTGTGTGGACGGTCCGAACCTTGGTGAGCGCGCTGCGAAGCCAC
ATGGCGACACCGGCGGTAGAGGTGGGAGGGATGGAGTGCTCGGCGCGGCG
CCGGAAGTTCCTTGCGCGGCGGTCCCGGGGATTTCTGTGCCGGGGTTGTG
GTGTGGACCATTCAAATTTCCCAGGACGCGTTTTCAGGAGCTTGCCGGAG
GTGGGAGAAGTGTCGCGGGTCCCCGGGCGGGGGGAAACACGAGGAAGGGG
GAATCGAGGCGGGCGGGAGACAGGAGTGGGAGTCGCCGACCGGGCCGCTT
TCTCGGGGCTCGCACGGCTGGTTGCTGTATTGCGCAGACACAAGGTGTCC
GTGCTGCTCTGTTTGGTATTCTGGATGTGTTTCCTTGTGCTGAATGCCTC
CTCTGCGCTGTGACGTGAAGGGAAGTGGCCCATCCTGCCTCCCTCATCTC
TGTTCCTTGATTTCTCTAATTTGTGTCCACGCGTACACTCTCTCAAATGC
GGCGCAACGCACATTCAGTCCTTACCGGTAGGAGTGAGGGGATAGCACCA
TGTAAAGTAATGTGCGCCGAGTTTCCCAACGGAGGTCCGACCAGCCCGGT
CGCGAGCGCGGGACTCTTTCTATGTC back to topprotein sequence of rna3420 >rna3420-protein ID=rna3420-protein|Name=rna3420|organism=Nannochloropsis gaditana|type=polypeptide|length=664bp
MSNILAAGDYDMHRSSNVELKQEASANMKSNAQVGLHPSQNQQLLQQQVQ
QPQGQEERGPKTATPPCLSEGRYTSFLAPLKSLTSPVASSVFEADAKQQQ
LLKDSLTADLKLLLHEFERFQQATALVSREGSKEVEAMERAAKVEFFLGY
IGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGG
LQHEPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTH
PTAAALMPSVRVQRLDSSSSGATTCSENSEEGRGQLDDMECLSLLMEEDG
QGLGRPQDRTAGGREWGLGPDEDVTDAASLVSEESSNVFAPSPGEASEML
ETISRGLGLGQKRLALSEGSTGSLGLASASFTSVESMQQLKRARSTVIPS
ISSNSISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAE
SYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEG
DDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFS
PAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDG
EACGFSWCRPCKHLLGHLVRCYESEQCSICRPQKREPCEEAVACKRETSG
AVREGVYRALTSLC back to topmRNA from alignment at CM002461.1:379179..383122- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3420 ID=rna3420|Name=rna3420|organism=Nannochloropsis gaditana|type=mRNA|length=3944bp|location=Sequence derived from alignment at CM002461.1:379179..383122- (Nannochloropsis gaditana)
ACCATAGTCCCTGGTTTCTGGTGGATACTCTCTCCTACCTTTGAAGGTCA
AAATTGTGCCACATAGCAATGACATGTTAAGTCATCACATGCTAACGTCA
TCCGTTGATATATATCTACTCAATAGGGGAACAGGATTGTCCTGTTTTGT
GCCCATTTTCGAGACAGGGACCGAACCAAGAGGAGCAAAAGAACGCTCTG
AGAGCGGCGGCCAAGCTCTTGCTGTTGCCCCTCACTCTCTTTTTGATTTT
TGGCCCCTTAATCACGTTGGGTACAAGCTCTCAACGTTTTGGATCGCTAG
CAATATCATTGATTGCGGCCTACTTTGTGTCTTGTGCGAAGCTCGTCCTG
TTCCACCCTTATAAGACAAGATCGCCTCGTCTGCAGCTCGAGTCCTTGTC
TCTCTTCAGGAAAGGCGAAAAATCCTCACAACGGAACGCACATTTCCACA
CATCTTATTCTGTTCGGACTTCGTGTCTGCATATTGAGAGTGTGAGATCC
TCCGGAGCCTGGGTGACCAGAGCTCTTCAATAAATCACACACCTCCAAAT
TAAACGAAGAGTGATATTCAAACAGACAGACCCAGCGTCAAGTCTGCAAT
GAGCAACATCCTTGCCGCAGGGGACTACGACATGCACAGAAGTAGCAATG
TGGAACTTAAGCAAGAGGCGTCAGCCAACATGAAATCAAACGCCCAGGTT
GGCCTGCATCCGTCACAGAATCAGCAGCTTCTGCAACAACAAGTGCAGCA
GCCGCAGGGACAGGAGGAGAGGGGGCCGAAGACAGCGACGCCACCATGTC
TATCAGAGGGAAGATATACCTCATTTCTGGCTCCGCTGAAATCACTGACC
TCCCCCGTGGCGTCTTCGGTGTTCGAGGCGGACGCGAAGCAGCAGCAACT
CTTGAAAGATTCCCTCACCGCAGACCTTAAACTGCTCTTGCACGAGTTTG
AACGCTTCCAGCAAGCGACAGCATTAGTGTCGAGAGAGGGCTCGAAAGAG
GTGGAGGCAATGGAGCGGGCGGCGAAAGTGGAATTCTTCCTAGGCTACAT
CGGAAAGGTGCTTCAGGAACTTGCCGGCGCCGACGCACCGAAGCTCCAGG
AATTAGAGGTTCGGATCAAGACCAGCCTCCTTCCATTGAAGGGGCAAGTG
GTGAACAAGCTTGCATCTTCCCTGCTCTCGTCCTCCGCCCTCGGTGGTCT
GCAGCATGAGCCTTCCTCCTCCGCATCCATCCCGTCGCCTTCCTCTTCTC
CTTCCTCCTCATGCAGCACCCACACCACTCCCCCCATCTCCCCCGTATCA
GGGGAGAAGATGACAGTCCAGGATGATGGCCGGAGGGAGAGGACGCATCC
GACGGCCGCCGCGCTCATGCCCTCCGTGCGAGTCCAACGCCTCGACAGCT
CCTCCAGTGGCGCCACCACCTGCTCGGAGAACTCCGAGGAGGGGCGCGGA
CAGCTTGACGATATGGAGTGCCTGAGCCTGCTCATGGAGGAAGACGGCCA
GGGACTGGGGAGGCCACAGGACAGGACGGCGGGCGGGAGGGAGTGGGGCC
TGGGCCCCGACGAGGACGTGACGGACGCGGCCAGCCTGGTGTCGGAGGAA
AGCAGCAACGTCTTCGCTCCCTCGCCCGGGGAGGCGTCGGAGATGCTGGA
GACGATCAGCAGGGGGCTGGGTCTGGGGCAAAAGAGGCTGGCCTTGTCGG
AGGGCAGCACGGGCAGCCTGGGCTTGGCCTCAGCGTCCTTCACCTCGGTT
GAGAGCATGCAGCAGCTCAAGAGGGCGCGCAGCACCGTGATTCCCAGCAT
CAGCAGCAATAGCATCAGCACCACCACCACCAGCAGCGTGAGCGTCGGCC
ATGGAAGCAGCGACGTTTCGGAACCCTCCATGTCCGTGGCGAGCGCGGAG
AAGCCTCAGGTGCGACAGGTCGAGTATCAGTGCGGGGTCTGTGCGGAATC
GTACAGCGCTGCCGCCTCCCTGAACCCCTGGTGGGCGCTGGAGAAGCAGG
AGTGCCCACAATGCAAGAAGCTGCAGATTCCTCGGATCGACATTAACCTG
CCGGCCAACACCATGGACTATCACCCCGCCCTGCTCGCGGAGGAGGGGGA
CGACGACGACGAGGAAGAGGGGCTGGGCCTGGGAGGGAGCGGATTGGTCC
CTGGGGAAGAGTTTCGGGGGATGGGGAAGGGAGGGGAGGACTCGGCGGTC
GGCGGCGGGATAGGCGTCCCGGAGGAGGAGGACGGGCAGGCCTTCTCCCC
GGCGCAAGCCTCGCAGATATTGGAGTTGATGTCGCACGCCCGGACCTGTC
CCGGCCACCACCACTCGGAGGCCCACCGCGCGGTGTGTACCTCCACCAAG
TACCTGATGCTGCATGTGAGGGACTGCGACGGGAAGACCCTGGACGGGGA
GGCCTGCGGCTTCTCCTGGTGCCGCCCTTGCAAGCACCTGCTGGGTCACC
TGGTGCGTTGTTATGAGTCGGAGCAGTGCAGCATTTGTCGTCCCCAGAAG
CGTGAGCCGTGCGAGGAAGCGGTCGCGTGCAAGAGGGAGACCAGCGGGGC
GGTGAGGGAGGGTGTGTATCGGGCACTGACGAGCTTGTGCTAATGCTTTT
CGGGCCTTGCGCGGTCTTGGTCAAGGAAGAAGGGGGGGGGGCATGCGGGC
CGATGTACGCCCTTTTCTCTGTTTTAAGGCCCACAGGACGATTAGACGCG
AAATTGCACGATCTATATGAGGGACGGACGCAGTTCCTCATGTATACTGA
GCAAATGAATTCATGGGGAGGAGGGGGTGAGGAGGCGGTGCATGGAAGGC
GTTAGACCCGGCATCAGCGCCATAGTCGGGTCTCGGATTGAACGCTTGAG
GAGATGGTGGCGCGGAAGGACGTATTGGAGAGAAGGGATAGCAAGGAAGG
AGGCGGAAGGCCGCTAGTGCATGTATGCCTTTGAGAAGAAAGTGGCCGAG
GCGGCGTACGAACGGGAGTCCTTGCCACGATTGCATATATGCATGGGAAT
CACTTCAAAACAACTCCAGCTACATGGCAACAGCCCAAACAGACGAGAGG
GACGGAGATAGAGAGGAGACCATACTCCAACTGTTCAGGTGGCTTTCGCC
AGCCCCACGACCGACGAAACCAACTCGTCGTAAATTTATGTCAGTATTGC
CATGTCAGTGCGTGTAGGTTGCAGGCAGATTGTGTCATTAGCTTGGCTCT
TCTGTCTGGCCATGTATTTTGTCGGGAAATGTAATGCATACGAATTGCCG
TATGTAGTAGAGTAGGACGTGATGTTTGGAAGAGTAGGGGATAAAGTAGT
CAAGAAACGCTAATTTTACATGGTGTTCAGATGCTGGAGCTGTATTGATG
CGAGGAATGTCGATCGATTTCGGAAATGCTTATACAGGTTGGTGGGGAGG
GTGGTAGGGAGCTAAATAGCGGAGAGACAAGTCAGCGATTGGTGTCTTAG
TATTCGAGGACCGGCGGGGAAGATATATTTGAGTCCTCCATTCGAGAAAT
ACTTGTGAGCGCGGGCGACCCTGCAAGAGGCGTGGGAATGTGTTACAGGG
ATGGCGACGTGCATAAAGGGAGGAAGCGGAGGCTTCGACGCAATAAGGGA
AACAAGGCGGCGTTGAATGACCGACTGATATGAGAACGGAAGACGAGAGA
TCAAGTGGAGGAGTATGACAAGCCAGGGCTAGGAGAGAGGGCAGAGGGAC
CGAGCGACGGGGTCGCTGCCCTCTCTGGGTCGCTTCGATTGCTCAGTTAC
TCCTCCGCAGTGTGACATGCGAGGGCCAGGATTGTACGAGGATGAGACGA
GAGTGAATATTGAGTAGATTGCAGTGGCGGGGATGGTTTGTAGGGAAGGC
AAGGGATGAACGCGAGGATAAACGGCATAAACAGTGACATATTTGGAAGA
AAAAAAACTCAGCCTTCAAGCCCCAAGCACAATGTTGACATAGA back to topCoding sequence (CDS) from alignment at CM002461.1:379179..383122- >rna3420 ID=rna3420|Name=rna3420|organism=Nannochloropsis gaditana|type=CDS|length=1995bp|location=Sequence derived from alignment at CM002461.1:379179..383122- (Nannochloropsis gaditana)
ATGAGCAACATCCTTGCCGCAGGGGACTACGACATGCACAGAAGTAGCAA
TGTGGAACTTAAGCAAGAGGCGTCAGCCAACATGAAATCAAACGCCCAGG
TTGGCCTGCATCCGTCACAGAATCAGCAGCTTCTGCAACAACAAGTGCAG
CAGCCGCAGGGACAGGAGGAGAGGGGGCCGAAGACAGCGACGCCACCATG
TCTATCAGAGGGAAGATATACCTCATTTCTGGCTCCGCTGAAATCACTGA
CCTCCCCCGTGGCGTCTTCGGTGTTCGAGGCGGACGCGAAGCAGCAGCAA
CTCTTGAAAGATTCCCTCACCGCAGACCTTAAACTGCTCTTGCACGAGTT
TGAACGCTTCCAGCAAGCGACAGCATTAGTGTCGAGAGAGGGCTCGAAAG
AGGTGGAGGCAATGGAGCGGGCGGCGAAAGTGGAATTCTTCCTAGGCTAC
ATCGGAAAGGTGCTTCAGGAACTTGCCGGCGCCGACGCACCGAAGCTCCA
GGAATTAGAGGTTCGGATCAAGACCAGCCTCCTTCCATTGAAGGGGCAAG
TGGTGAACAAGCTTGCATCTTCCCTGCTCTCGTCCTCCGCCCTCGGTGGT
CTGCAGCATGAGCCTTCCTCCTCCGCATCCATCCCGTCGCCTTCCTCTTC
TCCTTCCTCCTCATGCAGCACCCACACCACTCCCCCCATCTCCCCCGTAT
CAGGGGAGAAGATGACAGTCCAGGATGATGGCCGGAGGGAGAGGACGCAT
CCGACGGCCGCCGCGCTCATGCCCTCCGTGCGAGTCCAACGCCTCGACAG
CTCCTCCAGTGGCGCCACCACCTGCTCGGAGAACTCCGAGGAGGGGCGCG
GACAGCTTGACGATATGGAGTGCCTGAGCCTGCTCATGGAGGAAGACGGC
CAGGGACTGGGGAGGCCACAGGACAGGACGGCGGGCGGGAGGGAGTGGGG
CCTGGGCCCCGACGAGGACGTGACGGACGCGGCCAGCCTGGTGTCGGAGG
AAAGCAGCAACGTCTTCGCTCCCTCGCCCGGGGAGGCGTCGGAGATGCTG
GAGACGATCAGCAGGGGGCTGGGTCTGGGGCAAAAGAGGCTGGCCTTGTC
GGAGGGCAGCACGGGCAGCCTGGGCTTGGCCTCAGCGTCCTTCACCTCGG
TTGAGAGCATGCAGCAGCTCAAGAGGGCGCGCAGCACCGTGATTCCCAGC
ATCAGCAGCAATAGCATCAGCACCACCACCACCAGCAGCGTGAGCGTCGG
CCATGGAAGCAGCGACGTTTCGGAACCCTCCATGTCCGTGGCGAGCGCGG
AGAAGCCTCAGGTGCGACAGGTCGAGTATCAGTGCGGGGTCTGTGCGGAA
TCGTACAGCGCTGCCGCCTCCCTGAACCCCTGGTGGGCGCTGGAGAAGCA
GGAGTGCCCACAATGCAAGAAGCTGCAGATTCCTCGGATCGACATTAACC
TGCCGGCCAACACCATGGACTATCACCCCGCCCTGCTCGCGGAGGAGGGG
GACGACGACGACGAGGAAGAGGGGCTGGGCCTGGGAGGGAGCGGATTGGT
CCCTGGGGAAGAGTTTCGGGGGATGGGGAAGGGAGGGGAGGACTCGGCGG
TCGGCGGCGGGATAGGCGTCCCGGAGGAGGAGGACGGGCAGGCCTTCTCC
CCGGCGCAAGCCTCGCAGATATTGGAGTTGATGTCGCACGCCCGGACCTG
TCCCGGCCACCACCACTCGGAGGCCCACCGCGCGGTGTGTACCTCCACCA
AGTACCTGATGCTGCATGTGAGGGACTGCGACGGGAAGACCCTGGACGGG
GAGGCCTGCGGCTTCTCCTGGTGCCGCCCTTGCAAGCACCTGCTGGGTCA
CCTGGTGCGTTGTTATGAGTCGGAGCAGTGCAGCATTTGTCGTCCCCAGA
AGCGTGAGCCGTGCGAGGAAGCGGTCGCGTGCAAGAGGGAGACCAGCGGG
GCGGTGAGGGAGGGTGTGTATCGGGCACTGACGAGCTTGTGCTAA back to top
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