EWM27239.1, cds3411 (CDS) Nannochloropsis gaditana

Overview
NameEWM27239.1
Unique Namecds3411
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:380530..382524 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27239.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g16.7694.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:380530..382524 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
GO:0005488binding
GO:0016740transferase activity
GO:0008270zinc ion binding
GO:0003712transcription coregulator activity
GO:0004402histone acetyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000197Znf_TAZ
Homology
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|585109420|gb|EWM27239.1| (hypothetical protein Naga_100038g16 [Nannochloropsis gaditana])

HSP 1 Score: 1349.73 bits (3492), Expect = 0.000e+0
Identity = 664/664 (100.00%), Postives = 664/664 (100.00%), Query Frame = 0
Query:    1 MSNILAAGDYDMHRSSNVELKQEASANMKSNAQVGLHPSQNQQLLQQQVQQPQGQEERGPKTATPPCLSEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSKEVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQHEPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAAALMPSVRVQRLDSSSSGATTCSENSEEGRGQLDDMECLSLLMEEDGQGLGRPQDRTAGGREWGLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGLGLGQKRLALSEGSTGSLGLASASFTSVESMQQLKRARSTVIPSISSNSISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQKREPCEEAVACKRETSGAVREGVYRALTSLC 664
            MSNILAAGDYDMHRSSNVELKQEASANMKSNAQVGLHPSQNQQLLQQQVQQPQGQEERGPKTATPPCLSEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSKEVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQHEPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAAALMPSVRVQRLDSSSSGATTCSENSEEGRGQLDDMECLSLLMEEDGQGLGRPQDRTAGGREWGLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGLGLGQKRLALSEGSTGSLGLASASFTSVESMQQLKRARSTVIPSISSNSISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQKREPCEEAVACKRETSGAVREGVYRALTSLC
Sbjct:    1 MSNILAAGDYDMHRSSNVELKQEASANMKSNAQVGLHPSQNQQLLQQQVQQPQGQEERGPKTATPPCLSEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSKEVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQHEPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAAALMPSVRVQRLDSSSSGATTCSENSEEGRGQLDDMECLSLLMEEDGQGLGRPQDRTAGGREWGLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGLGLGQKRLALSEGSTGSLGLASASFTSVESMQQLKRARSTVIPSISSNSISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQKREPCEEAVACKRETSGAVREGVYRALTSLC 664          
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|298709838|emb|CBJ26178.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 177.948 bits (450), Expect = 1.765e-43
Identity = 90/200 (45.00%), Postives = 114/200 (57.00%), Query Frame = 0
Query:  439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVP------GEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRP 632
            R V Y+C +C ESY +  + NPWW+L   ECP+C ++QIPR+D    A ++DY  A+ AEEG+  D + G G              G E  G+     D   G      +E     F   QAS++L LMSHARTCPGHH +  H  VC STK+LMLH+RDC G T +G+ C   WCRPCK LL HLVRC +   C IC P
Sbjct:  464 RTVSYECSLCKESYPSEIASNPWWSLFLHECPRCHRMQIPRVDATSAAVSVDYIHAVCAEEGEGCDSD-GYGSESCSDSDDDVTDDGREREGIAAFDTDIIAGDSQAGCKEGRLSTF---QASRLLVLMSHARTCPGHHANPKHAEVCRSTKFLMLHMRDCTGHTANGDPCEHRWCRPCKSLLSHLVRCPDPNTCRICTP 659          
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|223994129|ref|XP_002286748.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978063|gb|EED96389.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 175.637 bits (444), Expect = 2.659e-42
Identity = 99/245 (40.41%), Postives = 122/245 (49.80%), Query Frame = 0
Query:  439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEE------------GDD-------------------DDE----EEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGV------PEEED------GQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYES---EQCSICRPQ 633
            R VEY C VC E Y +   +NPWWAL   ECP+C K QIPR+DI+ P N ++YHPALL +E            GD                    D E    +E  G GG+     EE+       E+S     +         E ED      G+  S  QA ++L L+ HA  CPG H S  HR VC STKYLMLHVRDC G   +G+ C F WCR  KHLL HLV C +S   ++C IC P+
Sbjct:  785 RTVEYVCAVCNEGYVSTCEMNPWWALINHECPKCGKNQIPRLDISAPNNVIEYHPALLVQEDGKPVSAPVSNGGDSSSVQMQYLPRHLAKKSSLSDSEVSQTDESDGEGGT-----EEYFDESSDDEESVNKNALDSFAKEERAEREDYGFEFKGETLSDDQAKRLLILIEHASICPGRHRSAKHRNVCHSTKYLMLHVRDCPGLLSNGDVCPFPWCRKTKHLLYHLVSCEKSNDGKECGICCPK 1024          
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|219130695|ref|XP_002185494.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403025|gb|EEC42981.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 174.096 bits (440), Expect = 9.472e-42
Identity = 90/240 (37.50%), Postives = 117/240 (48.75%), Query Frame = 0
Query:  439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEE-------------------------------GDDDDEEEGLGLG-------------GSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQK 634
            R VEY C +C E Y++    NPWWAL + +CP+C+K QIPR+DI+ PANT++YHPALLA                                 G+D D                     GSG +  E    +     + A     GV  E  G     ++A+++L LM HA TCP  H S  HR  C +TK++MLHVRDC G T   + C F WCR  KHLL HLV C +++ C IC P K
Sbjct:  856 RTVEYMCALCNEVYNSTCDYNPWWALAQHDCPKCRKNQIPRVDISAPANTIEYHPALLAHADENGGSTPTPPAAIVKPVTTVSAPVTSVPKCGNDSDSFGSDLSDDDLDGLLSDTDSEGSGEIGMERIDALSPA--EQAENEYFGV--EYKGPKLKDSEAARLLILMGHASTCPCKHQSIKHRETCRNTKWMMLHVRDCPGTTSSFDVCPFPWCRKVKHLLYHLVSCRDAKHCEICSPTK 1091          
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|1210522805|dbj|GAX18384.1| (hypothetical protein FisN_15Lh321 [Fistulifera solaris])

HSP 1 Score: 171.4 bits (433), Expect = 3.773e-41
Identity = 90/240 (37.50%), Postives = 114/240 (47.50%), Query Frame = 0
Query:  439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALL------------------------AEEGDDD------------------------DEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC 630
            R VEY C +C E Y++    NPWWAL ++ECP+C+K QIPR+DI  PAN ++YHPALL                        A  GDD                         D +E + L    + P E+        E    G       E DG  FS ++++++L LM HA TCP  H S  H  VC S K++MLHVRDC G T   + C F WCR  KHLL HLV C     C+IC
Sbjct:  450 RNVEYMCALCNEVYNSTCDYNPWWALTQEECPKCQKTQIPRLDIGAPANAIEYHPALLAHADDAGGAAEPSASPESQDLPIPATAGDDMEYSDVDDSDLSDDDGLLSDASLDLDSDESVVLDSENMSPAEQ-------AESEKFGA------EYDGPKFSDSESARLLNLMLHASTCPCRHKSSNHYDVCRSAKWMMLHVRDCPGTTSTFDVCPFPWCRKTKHLLYHLVSCVFPRNCAIC 676          
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|1210528643|dbj|GAX12840.1| (hypothetical protein FisN_15Hh321 [Fistulifera solaris])

HSP 1 Score: 171.4 bits (433), Expect = 4.276e-41
Identity = 89/240 (37.08%), Postives = 113/240 (47.08%), Query Frame = 0
Query:  439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALL------------------------AEEGDDD------------------------DEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC 630
            R VEY C +C E Y++    NPWWAL ++ECP+C+K+QIPR+DI  PAN ++YHPALL                        A  GDD                         D +E   L    + P E+      G E              DG  FS ++++++L LM HA TCP  H S  H  VC S K++MLHVRDC G T   + C F WCR  KHLL HLV C     C+IC
Sbjct:  449 RNVEYMCALCNEVYNSTCDYNPWWALTQEECPKCQKIQIPRLDIGAPANAIEYHPALLAHADDAGGAAEPSAAPESQDLPIPATAGDDMEYSDVDDSDLSDDDGLLSDASLDLDSDESEILDSENMSPAEQAESEKFGAE-------------YDGPKFSDSESARLLNLMLHASTCPCRHKSSDHYDVCRSAKWMMLHVRDCPGTTSTFDVCPFPWCRKTKHLLYHLVSCASPRNCAIC 675          
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|299116269|emb|CBN74618.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 166.007 bits (419), Expect = 1.874e-40
Identity = 90/199 (45.23%), Postives = 112/199 (56.28%), Query Frame = 0
Query:  433 AEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPA----QASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQC 627
            A  P+ R+V YQCG CA SY+A  S NPWW L +QECP C K+QIPR+DI  P N ++ H A L E   D D   G  +   G    +E  G    G++       G     DG    P     QA+++L LM HAR CPG+H S     VC S K+LMLH+RDCDGKT +G+ C   WC PC  LL HL++C ES  C
Sbjct:  323 AFSPEPREVRYQCGACAASYAATVSGNPWWLLVRQECPICHKMQIPRVDILNPTNNVESHIAFLTENASDGD---GSCMDWDGET-SDENSGDEYSGDERQGLSAGGSMSGGDGSGLGPTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCMSLLHHLIQCPESTGC 517          
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|676400193|ref|XP_009043374.1| (hypothetical protein AURANDRAFT_69358 [Aureococcus anophagefferens] >gi|323445182|gb|EGB01927.1| hypothetical protein AURANDRAFT_69358 [Aureococcus anophagefferens])

HSP 1 Score: 112.464 bits (280), Expect = 1.607e-23
Identity = 69/201 (34.33%), Postives = 89/201 (44.28%), Query Frame = 0
Query:  441 VEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRI---DINLP---ANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPE-----EEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC 630
            V+Y C VC  +Y   +  NP W L +  CPQC  LQ P I   DI+LP   A   D    L   +GD           G+   P     G     +D  V      P      ++D    S AQ + +LEL  H R+CPG H S AH  VC   K++MLH RDCD        CG  WC   K LL  +V   + ++C +C
Sbjct:   23 VKYYCSVCEHAYETTSDANPLWTLARHSCPQCGALQYPEIEIDDISLPTAEARAPDDASTLSHAQGD-----------GARSPPRPAALGRAAAADDGEVLLRADAPRKRSAPDDDASTMSHAQGAALLELFDHVRSCPGRHQSAAHARVCAGAKFVMLHARDCDAAP---GTCGVEWCGAVKGLLSRVVCGQQGDKCVVC 209          
The following BLAST results are available for this feature:
BLAST of EWM27239.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585109420|gb|EWM27239.1|0.000e+0100.00hypothetical protein Naga_100038g16 [Nannochlorops... [more]
gi|298709838|emb|CBJ26178.1|1.765e-4345.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|223994129|ref|XP_002286748.1|2.659e-4240.41predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219130695|ref|XP_002185494.1|9.472e-4237.50predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210522805|dbj|GAX18384.1|3.773e-4137.50hypothetical protein FisN_15Lh321 [Fistulifera sol... [more]
gi|1210528643|dbj|GAX12840.1|4.276e-4137.08hypothetical protein FisN_15Hh321 [Fistulifera sol... [more]
gi|299116269|emb|CBN74618.1|1.874e-4045.23conserved unknown protein [Ectocarpus siliculosus][more]
gi|676400193|ref|XP_009043374.1|1.607e-2334.33hypothetical protein AURANDRAFT_69358 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3420rna3420Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications