EWM27239.1, cds3411 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|585109420|gb|EWM27239.1| (hypothetical protein Naga_100038g16 [Nannochloropsis gaditana]) HSP 1 Score: 1349.73 bits (3492), Expect = 0.000e+0 Identity = 664/664 (100.00%), Postives = 664/664 (100.00%), Query Frame = 0
Query: 1 MSNILAAGDYDMHRSSNVELKQEASANMKSNAQVGLHPSQNQQLLQQQVQQPQGQEERGPKTATPPCLSEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSKEVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQHEPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAAALMPSVRVQRLDSSSSGATTCSENSEEGRGQLDDMECLSLLMEEDGQGLGRPQDRTAGGREWGLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGLGLGQKRLALSEGSTGSLGLASASFTSVESMQQLKRARSTVIPSISSNSISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQKREPCEEAVACKRETSGAVREGVYRALTSLC 664
MSNILAAGDYDMHRSSNVELKQEASANMKSNAQVGLHPSQNQQLLQQQVQQPQGQEERGPKTATPPCLSEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSKEVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQHEPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAAALMPSVRVQRLDSSSSGATTCSENSEEGRGQLDDMECLSLLMEEDGQGLGRPQDRTAGGREWGLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGLGLGQKRLALSEGSTGSLGLASASFTSVESMQQLKRARSTVIPSISSNSISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQKREPCEEAVACKRETSGAVREGVYRALTSLC
Sbjct: 1 MSNILAAGDYDMHRSSNVELKQEASANMKSNAQVGLHPSQNQQLLQQQVQQPQGQEERGPKTATPPCLSEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSKEVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQHEPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAAALMPSVRVQRLDSSSSGATTCSENSEEGRGQLDDMECLSLLMEEDGQGLGRPQDRTAGGREWGLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGLGLGQKRLALSEGSTGSLGLASASFTSVESMQQLKRARSTVIPSISSNSISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQKREPCEEAVACKRETSGAVREGVYRALTSLC 664
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|298709838|emb|CBJ26178.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 177.948 bits (450), Expect = 1.765e-43 Identity = 90/200 (45.00%), Postives = 114/200 (57.00%), Query Frame = 0
Query: 439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVP------GEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRP 632
R V Y+C +C ESY + + NPWW+L ECP+C ++QIPR+D A ++DY A+ AEEG+ D + G G G E G+ D G +E F QAS++L LMSHARTCPGHH + H VC STK+LMLH+RDC G T +G+ C WCRPCK LL HLVRC + C IC P
Sbjct: 464 RTVSYECSLCKESYPSEIASNPWWSLFLHECPRCHRMQIPRVDATSAAVSVDYIHAVCAEEGEGCDSD-GYGSESCSDSDDDVTDDGREREGIAAFDTDIIAGDSQAGCKEGRLSTF---QASRLLVLMSHARTCPGHHANPKHAEVCRSTKFLMLHMRDCTGHTANGDPCEHRWCRPCKSLLSHLVRCPDPNTCRICTP 659
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|223994129|ref|XP_002286748.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978063|gb|EED96389.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 175.637 bits (444), Expect = 2.659e-42 Identity = 99/245 (40.41%), Postives = 122/245 (49.80%), Query Frame = 0
Query: 439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEE------------GDD-------------------DDE----EEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGV------PEEED------GQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYES---EQCSICRPQ 633
R VEY C VC E Y + +NPWWAL ECP+C K QIPR+DI+ P N ++YHPALL +E GD D E +E G GG+ EE+ E+S + E ED G+ S QA ++L L+ HA CPG H S HR VC STKYLMLHVRDC G +G+ C F WCR KHLL HLV C +S ++C IC P+
Sbjct: 785 RTVEYVCAVCNEGYVSTCEMNPWWALINHECPKCGKNQIPRLDISAPNNVIEYHPALLVQEDGKPVSAPVSNGGDSSSVQMQYLPRHLAKKSSLSDSEVSQTDESDGEGGT-----EEYFDESSDDEESVNKNALDSFAKEERAEREDYGFEFKGETLSDDQAKRLLILIEHASICPGRHRSAKHRNVCHSTKYLMLHVRDCPGLLSNGDVCPFPWCRKTKHLLYHLVSCEKSNDGKECGICCPK 1024
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|219130695|ref|XP_002185494.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403025|gb|EEC42981.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 174.096 bits (440), Expect = 9.472e-42 Identity = 90/240 (37.50%), Postives = 117/240 (48.75%), Query Frame = 0
Query: 439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEE-------------------------------GDDDDEEEGLGLG-------------GSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRPQK 634
R VEY C +C E Y++ NPWWAL + +CP+C+K QIPR+DI+ PANT++YHPALLA G+D D GSG + E + + A GV E G ++A+++L LM HA TCP H S HR C +TK++MLHVRDC G T + C F WCR KHLL HLV C +++ C IC P K
Sbjct: 856 RTVEYMCALCNEVYNSTCDYNPWWALAQHDCPKCRKNQIPRVDISAPANTIEYHPALLAHADENGGSTPTPPAAIVKPVTTVSAPVTSVPKCGNDSDSFGSDLSDDDLDGLLSDTDSEGSGEIGMERIDALSPA--EQAENEYFGV--EYKGPKLKDSEAARLLILMGHASTCPCKHQSIKHRETCRNTKWMMLHVRDCPGTTSSFDVCPFPWCRKVKHLLYHLVSCRDAKHCEICSPTK 1091
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|1210522805|dbj|GAX18384.1| (hypothetical protein FisN_15Lh321 [Fistulifera solaris]) HSP 1 Score: 171.4 bits (433), Expect = 3.773e-41 Identity = 90/240 (37.50%), Postives = 114/240 (47.50%), Query Frame = 0
Query: 439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALL------------------------AEEGDDD------------------------DEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC 630
R VEY C +C E Y++ NPWWAL ++ECP+C+K QIPR+DI PAN ++YHPALL A GDD D +E + L + P E+ E G E DG FS ++++++L LM HA TCP H S H VC S K++MLHVRDC G T + C F WCR KHLL HLV C C+IC
Sbjct: 450 RNVEYMCALCNEVYNSTCDYNPWWALTQEECPKCQKTQIPRLDIGAPANAIEYHPALLAHADDAGGAAEPSASPESQDLPIPATAGDDMEYSDVDDSDLSDDDGLLSDASLDLDSDESVVLDSENMSPAEQ-------AESEKFGA------EYDGPKFSDSESARLLNLMLHASTCPCRHKSSNHYDVCRSAKWMMLHVRDCPGTTSTFDVCPFPWCRKTKHLLYHLVSCVFPRNCAIC 676
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|1210528643|dbj|GAX12840.1| (hypothetical protein FisN_15Hh321 [Fistulifera solaris]) HSP 1 Score: 171.4 bits (433), Expect = 4.276e-41 Identity = 89/240 (37.08%), Postives = 113/240 (47.08%), Query Frame = 0
Query: 439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALL------------------------AEEGDDD------------------------DEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC 630
R VEY C +C E Y++ NPWWAL ++ECP+C+K+QIPR+DI PAN ++YHPALL A GDD D +E L + P E+ G E DG FS ++++++L LM HA TCP H S H VC S K++MLHVRDC G T + C F WCR KHLL HLV C C+IC
Sbjct: 449 RNVEYMCALCNEVYNSTCDYNPWWALTQEECPKCQKIQIPRLDIGAPANAIEYHPALLAHADDAGGAAEPSAAPESQDLPIPATAGDDMEYSDVDDSDLSDDDGLLSDASLDLDSDESEILDSENMSPAEQAESEKFGAE-------------YDGPKFSDSESARLLNLMLHASTCPCRHKSSDHYDVCRSAKWMMLHVRDCPGTTSTFDVCPFPWCRKTKHLLYHLVSCASPRNCAIC 675
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|299116269|emb|CBN74618.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 166.007 bits (419), Expect = 1.874e-40 Identity = 90/199 (45.23%), Postives = 112/199 (56.28%), Query Frame = 0
Query: 433 AEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPEEEDGQAFSPA----QASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQC 627
A P+ R+V YQCG CA SY+A S NPWW L +QECP C K+QIPR+DI P N ++ H A L E D D G + G +E G G++ G DG P QA+++L LM HAR CPG+H S VC S K+LMLH+RDCDGKT +G+ C WC PC LL HL++C ES C
Sbjct: 323 AFSPEPREVRYQCGACAASYAATVSGNPWWLLVRQECPICHKMQIPRVDILNPTNNVESHIAFLTENASDGD---GSCMDWDGET-SDENSGDEYSGDERQGLSAGGSMSGGDGSGLGPTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCMSLLHHLIQCPESTGC 517
BLAST of EWM27239.1 vs. NCBI_GenBank
Match: gi|676400193|ref|XP_009043374.1| (hypothetical protein AURANDRAFT_69358 [Aureococcus anophagefferens] >gi|323445182|gb|EGB01927.1| hypothetical protein AURANDRAFT_69358 [Aureococcus anophagefferens]) HSP 1 Score: 112.464 bits (280), Expect = 1.607e-23 Identity = 69/201 (34.33%), Postives = 89/201 (44.28%), Query Frame = 0
Query: 441 VEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRI---DINLP---ANTMDYHPALLAEEGDDDDEEEGLGLGGSGLVPGEEFRGMGKGGEDSAVGGGIGVPE-----EEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC 630
V+Y C VC +Y + NP W L + CPQC LQ P I DI+LP A D L +GD G+ P G +D V P ++D S AQ + +LEL H R+CPG H S AH VC K++MLH RDCD CG WC K LL +V + ++C +C
Sbjct: 23 VKYYCSVCEHAYETTSDANPLWTLARHSCPQCGALQYPEIEIDDISLPTAEARAPDDASTLSHAQGD-----------GARSPPRPAALGRAAAADDGEVLLRADAPRKRSAPDDDASTMSHAQGAALLELFDHVRSCPGRHQSAAHARVCAGAKFVMLHARDCDAAP---GTCGVEWCGAVKGLLSRVVCGQQGDKCVVC 209 The following BLAST results are available for this feature:
BLAST of EWM27239.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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