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Properties
| Property Name | Value |
|---|
| Product | Homeodomain protein |
| Orig transcript id | gnl|cribi|Naga_100192g4.10353.mrna |
| Orig protein id | gnl|cribi|Naga_100192g4.10353 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:220625..225617 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3363 ID=rna3363|Name=rna3363|organism=Nannochloropsis gaditana|type=mRNA|length=1223bp
CCCTTGTACAGTCCCATTTTTCAGACGAAAATGGCGTCACCGGCTCCCGA
GAAGAAATACACCATGGCTGTGAAGGCCTATAAGAACCCTGACTTTCTCA
ATTCAGGTCATGCCCGCTTTATTCGTGTCATGTGCGAATACGAGGAAACG
ATGTACCGCCTGAAAGCCTACGGCGTGAAAAGCACCATTCTGTTCTTCGG
TTCTGCTCGGGCTAAAAGCAGGGAACAATACGATCACAGAATGGGGGAAC
TGGTGGAAGCGCTGGCGGGGGCGGTGACGGAACAGGAGCAGAAAGACGCG
GAGGCGGCCATCGCCACCTTACGGAAGACCGAATGGCTCACCGAGTATTT
TGACAAAGTGACGGAACTCTCGAAGCGCCTGACAGACTGGTCCTTGCAGT
CGGAGCACAAGCTGGCCCAGGCACGCACGTACACGGGCGTGACCCGATAC
CACCTCAAAACTCGGGGGCCCGTCCCGCACCAGTCCTACTCCATCATCGA
CGAGGACGTCAAGGAGCATCCGGAGCAAAGTATTTATATCACCACGGGGG
GCGGGCCAGGCTTCATGGAGGCGGCGAACAAGGGCGCAAGCGAGGTGCCA
GGGGCGCTGACGATCGGGATGGGCATCACTCTCCCCTTCGAGGACGGTCT
CAACCCTTACGTGTCCGAGGAGCTGGCGTTTGAGTTCCATTACTTCTTCA
CTCGGAAGTTCTGGATGGTGTACCACTGTCAGGCTCTTGTGGTCGCCCCC
GGTGGTATGGGCACTCTTGATGAGCTATTTGAGGTCCTGACCCTGAAACA
AACGGGAAAGGTGCAGCCAGACATGCCGGTCGTCCTGTTCGGGAAGGAGT
TTTGGAAAAGCATCATCAGTTGGGACGCGCTGGCGGACTACGGGGTCATT
TCCCAGAAAGATGTTTCTGGGCTTTTTTTCGCGGACACTGTGGACGAGGC
CTTTGATTACCTCCTCTCCAGACTCACGAAGGCCCCGCTCAACGACATTT
TCAAGGAATTTGACGGTGATAAGCAGGCGATGGATAACACGGAGAGTGTT
GTAGCATAATCTGGGGGATCTTGTTGCATGACACAGCGCGAGTGAGAGGA
AAGGCGGATGGCCTGTAAGAGTTTTTTCCTCAGGGTCTTTGAAAACGAGC
TGAGTAGTCTTCTGGATGAGAGCATGGAAAGGGCGATTGAAAAGAAGTCC
CAAACGACGACTTAAATTTGAAA back to topprotein sequence of rna3363 >rna3363-protein ID=rna3363-protein|Name=rna3363|organism=Nannochloropsis gaditana|type=polypeptide|length=949bp
MSTSPLSPTGNGVRGRSEGAGEDAGALRRWSKGGEECEGDQARGEDGKVG
RRVDDDMLNYGDRRVDDDMLNYGDAKEKEDGHAETEEDEDGSQASGDFGV
GREEEGGEEEPRPEVDLKPRAEEVPTAGVERRRSRRETRGRHSLREGEEE
GGLRGLGQGSNASVISGGSQGGRRGPKGGKQARSGGSNSNSGGKAAHAQP
QDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHI
AHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDESGGP
GRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPHYHPSG
ALARSPSPLSPSGMGLGSPPLHNHSALDSFTSRSAAASPEPFSPRLYRSG
QQQLHTSSPISPSAAEAAAAAAVAFSSRQHQQHHLLSEHPMGGGHMPVAG
MGGGKGSGTGVFYPRHTSSGLPPPPQQPPSATTGGGGGGMTTMGSLGTLS
GFASVEDFFKNFLGDGSNSPLNAAGKEGGQPALMKTFSSRSFGNFRTSSS
LSDFPRTDSYAFLEVFFNDDGLDGLGGGGGREGGKGGGREENIGLSMDDD
MVLGGTTGTATMQGPGLGGGVKRGISSVSVGEEEPAAGANSSRMKRQARE
QGQGGYESFSPTPMLEAQVGSEGGTEGGERPPHVPLPALHLPGSRPSSGS
HSPRSRSGSPLHAGGGAGPVYHAFFKVGSHGNVVPSGAVMGTSGVSFPHP
PEGGAPGMEQVSSSLGGRGEGESIGGGPGPSGEGVGREGGVGKGGLSRSP
TLQEVMMEQYYQHHQPPPSGPDSHASARPASPPSSEPVHVSTGARCPFCP
TLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIPCI
ATGASFDSLPPVAGEGEGGGAGRTVEGPEHGKERLEAESSAVQMAGSHV back to topmRNA from alignment at CM002461.1:220625..225617+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3363 ID=rna3363|Name=rna3363|organism=Nannochloropsis gaditana|type=mRNA|length=4993bp|location=Sequence derived from alignment at CM002461.1:220625..225617+ (Nannochloropsis gaditana)
TTTGAACCGTTTACACCCCTCATGTTGAAGATGGCTGGGAGGGCGCAAGG
ACGGGCGTCCCACGTGCATTACAGAggtgaaaggaaagcaacTGTGACCC
AGATATGTCTAGAAGGGATGCAATGGATTCTTGAGTAGAGATGGAAAGAA
TTGGTGTGTTTTTGGGCCCTTTGGGcgccacctctttctccattctTTTT
GTGCCAGACTACCGAAATAAGACCTTTTACGCATGTACCAAAAACGCAAA
AATCATCACAGAGCCTTCCTAACTATTATGACTTGGTATGATGCATATCA
ATCACTCTGTCGTTGTCACTTCGTGGCATCTTTATTGCGCTCTAGAGAGA
AGGCAGATGGCCCCCCTCACACGGACCGAAAGAGGTCGAGCTGCAGAATA
CGAAAGCAGCAAAAGCTTGCATTGACATTTCACACTCTACCAGACAGGAA
AGCCATGCATTGTCTGAGTACTGTCATATTCTATATCGTGATTTCCAGCT
AAATAGTTGTTGTGGGCAAAATAGTCTTTCCAAGCAATAGACACGAGACT
GCTGCCTTCCTGATTCTGCCTCTATCAGATGTTGCAATGCTCCTGCTCTG
ACATCACGTCTCTAGCATGCCTTTCCACCGCTCTGTGAAGCTACCTATGC
AGATGAAATGTATCTGCGTGCAATGCTTCACTTTGTCGTGTTTGCGGGCT
TAAGCCTATCGACAAATGCAACAGAAAACtcggggagggcagggtAGCTC
GTCACGTTTCAACAACGCACGTGGTCAAAATATAGCTCACAGCCGTTGTC
ACCGACACATTCCATCCTCGCATATCCTCTCATTGTAGGCGGTTAACATT
TTGACGGAGCCAAGGAAGCCTCTTCTTCAAGCCGCTTCGGCCGGCAGGCA
CCTGGACTGCAGGCacggccccctcccatcgcctCGTGACAGCGTGGGTG
TAGGAAGGACCAGGGAAGCGTCCGCCGCAACGCTCACACGCACACGTCGA
AAGAAAAAGGGTCCCCTCTGAGGGCACGCGAAGCGCTCGGATTGTTAGGG
TCTTTGCAGGGAGCTTGGGAGGCTTGTCAGCGTATGTCCACGTCGCCACT
ATCGCCCACAGGGAACGGCGTTCGGGGGAGGtcggaaggagcaggagaag
acgcGGGAGCGCTGCGTCGgtggagcaagggaggggaagaatgTGAGGGG
GACCAGgcgaggggcgaggacggcaagGTGGGCCGGAGGGTCGACGACGA
CATGCTGAATTACGGCGACAGGAGGGTCGACGACGACATGCTGAATTACG
GCGACgccaaagaaaaggaggatgggcacgcagagacggaagaggacgag
gacggcagCCAGGCAAGTGGTGACTTTGGtgtgggccgggaggaggaggg
aggggaggaggagccgagACCGGAGGTGGATCTTAAGCctagggcggagg
aggttccCACGGCGGGCGTCGAACGGCGGCGAAGCCGGCGGGAAACCCGA
GGCCGTCATTCGctccgggagggggaagaggagggagggttgcgGGGCTT
GGGGCAGGGCTCGAACGCGAGTGTGATAAGTGGAGGTAgtcagggaggac
ggcgagggccCAAGGGCGGGAAACAGGCGCGATCGGGGGGAAGCAACAGC
AATAGCGGTGGCAAAGCCGCGCACGCCCAGCCACAGGACCTCCAATACTA
CGACATGGACGATTTtatggaaggggaagggggcagtGGGCCtgggaaaa
aatgcgcgaaaaaATCACGGCGGGAATTGCCCAACGGGGCGGTGGCCACT
TTGAAAGGCTGGCTGCTTTCCCCCGAGCACATCGCCCATCCCTACCCAAC
GGCACAGGACCAAGTGGCGTTGATGGCGGCGACGGGCATCGACAAGAAGC
AGTTGAAAAATTGGTTCACGAACGCGCGCCGACGCATTTGGAAACCAATG
CTGCGGCGTCAGACGGACGAATCGGGGGGTCCGGGGCGTGTctcgcgagg
aggaggggcgggattGGACGGGGGAGGTGTGGGGAATGGAGCAGGCTtgc
caccttccccttcgtcctccaccgcgcgGGGGGGGTTGGCCCCTGGGAGC
CTGCAGCTCCCGCCCCACTACCATCCCTCCGGGGCCCTTGCCCgatcacc
ctcccccctatCCCCTTCCGGGATGGGTTTgggcagcccccccctccaca
aCCACAGCGCCCTCGACAGTTTTACCAGCCGGAGCGCGGCCGCTTCGCCC
GAACCGTTTTCTCCCCGACTCTACCGGTCGGGTCAGCAGCAGCTCCATAC
GTCTTCCCCGATCTCCCCCAGTGCCGccgaggcggccgccgccgccgcgg
tggCTTTCTCATCCcggcagcaccagcaacacCACCTGCTGAGCGAGCAt
ccgatggggggggggcacatGCCTGTTGccgggatggggggggggaaagg
gtcgGGAACGGGCGTGTTTTATCCACGCCACACAAGCTCGggcctgccgc
cgccgccacagcAGCCCCCAAGCGCGACcacggggggaggcgggggagga
atgaCGACCATGGGGTCGCTGGGCACCTTGAGTGGCTTTGCGAGCGTGGA
GGATTTTTTCAAGAATTTTCTCGGGGATGGGAGCAACAGCCCCCTGAATG
CggctgggaaggaaggaggccaaCCGGCGCTGATGAAAACGTTTTCTTCT
CGGAGTTTCGGGAATTTTCGGACGAGTTCGTCCTTGAGTGATTTTCCGCG
AACGGATTCGTACGCGTTCCTGGAAGTGTTTTTCAATGACGACGGCTTGG
ACggcttgggaggagggggagggcgggagggagggaaggggggagggagg
gaggagaacatcGGGTTGTCCATGGACGACGACATGGTTCTGGGCGGAAC
GACGGGCACGGCGACGATGCAGGGCCccggcctgggggggggcgtaaAGC
GGGGCATCTCCAGCGTGtcggtgggggaagaggagccagcCGCAGGCGCG
AACTCCTCCAGGATGAAGCGTCAGGCACGCGAgcaggggcaaggaggcta
cgagtccttctcccccacgcccatgCTGGAAGCGCAGGTggggtcggagg
gcgggacggagggcggggaacgGCCTCCTCATGTGCCACTTCCAGCACTG
CACCTGCCTGGCTCGAGGCCCTCCTCCGGAAGCCACTCTCCTAGGAGCAG
GTCCGGCTCTCCCCTGCACGcggggggtggggcgggGCCTGTCTACCACG
CTTTTTTCAAGGTGGGGAGCCACGGGAATGTGGTCCCGTCCGGGGCCGTG
ATGGGCACCAGCGgggtctccttccctcatcctcccgaGGGGGGTGCGCC
GGGAATGGAGCaggtttcttcctccttgggagggaggggggagggagaaa
gcatTGGTGGGGGGCCAGGACCCAGTGGGGAAggcgttgggagggagggt
ggggttgGCAAGGGAGGCTTGAGCCGATCGCCGACCTTGCAAGAGGTGAT
GATGGAGCAGTATtaccagcaccaccagccGCCTCCGTCCGGGCCTGACT
CACACGCGTCTGcccgcccggcctcccccccctcttcggAGCCTGTGCAC
GTCTCGACGGGGGCCCGCTGCCCCTTTTGCCCGACCTTGAGCGTGGACAC
TCAATTGCGACCCTGcggccacctcttccacgggAACTGCCTCAAACCCT
GGCTCCAGAAatccccgtcgcccccgGCATGCCCTGTGTGTCGCGAAAGC
ATTGCTTCCTGCGTGTTGGCCATTCCTTGCATTGCCACGGGGGCCTCCTT
CGACTCGTTGCCGCCCGTGGCGGgcgaaggcgaaggcgggggggcaggga
ggacggtggAAGGGCCCGagcatgggaaggaaaggctggaggcggagtcG
TCGGCAGTGCAAATGGCGGGGAGCCACGTTTAAagaacgaggggagggag
agagaggcgggaTGAATGCCGGTGGCTGGGTGTTCCCCGGAACGCGGAGT
ATCCACACGGAGGCGTGTGGAAAGGGCCTGAGGGATTTTGTCTGTAAGGG
CTCTCTCTCCACCTAcatgatggagagggaggacaggcaggaggagagtg
ggACGCTATAGTCTCActtgggaagagaagaacggtagaggaggagggaa
ggaaagacaaAGGGGGGTTGCGTTTGAACGTGTGTACATGTGCGGTTTCA
CATGGTATTCTACTTATTTAGTACGATGGAGATGGATGCAAGCGGAGTGA
ATGACCTTAACGTAAAAGGAGAGTGAAATGCGGGTAGCGCTGCACGTgca
gaaaagggaaaaatcgACCGTATCCACCGGGCAGGCGCACGGAGCGACGC
GCGCATCGTGTGACGAAAGGGGGCGCTGACCGTGTGTCGAAAGGGGGCGC
TGACCGTGTGATGCTCGGCGCGATCGGATGGCTTGTGCCCGTGCAGAGTC
CCTCCGGTCCCTTTCACGTGAGCCTTGGGGGCCGCGGATAAAAGCACGAG
CCGGTGCAGGCCAAGGCAGACATTATTTGGGGGGTTTGAGACACATTGGG
TCGTTGGGAAGTAAGGGCAATGACAGCAGCATGCGTGTGGACGAAGTAAT
GCCCGTCTAGGAGCATGAAAGTACAGGCAACGACAAGAAAACACGGGTGT
TCAAAGGTATCACTGTACGTGTGTGAGCACAGCAGTGCAGTATGCACTGC
GAGGGCTGTCGATAGGTAGCAGTACGGATTTTACTGCCACAACCACGACA
GATAAAATCATGAATGCACAAGCAACAGCAGAAGTGTGTATATTATGGTT
AAGATCCTCGCTTTAATTTCTCGGTGAACTCAATATGAAAGAAcaaaaaa
gggatggagTGATAAAATTTTGAAGAGACGAATGATGTATTTTCCGGGTG
AAATATagttttttttcccggaCTTAATTGGTCTTATTATTTCCATTGAA
ATGTGCACGCACAACAACAGCCTCAACACCTTAAGCTGGCGGT back to topCoding sequence (CDS) from alignment at CM002461.1:220625..225617+ >rna3363 ID=rna3363|Name=rna3363|organism=Nannochloropsis gaditana|type=CDS|length=2850bp|location=Sequence derived from alignment at CM002461.1:220625..225617+ (Nannochloropsis gaditana)
ATGTCCACGTCGCCACTATCGCCCACAGGGAACGGCGTTCGGGGGAGGtc
ggaaggagcaggagaagacgcGGGAGCGCTGCGTCGgtggagcaagggag
gggaagaatgTGAGGGGGACCAGgcgaggggcgaggacggcaagGTGGGC
CGGAGGGTCGACGACGACATGCTGAATTACGGCGACAGGAGGGTCGACGA
CGACATGCTGAATTACGGCGACgccaaagaaaaggaggatgggcacgcag
agacggaagaggacgaggacggcagCCAGGCAAGTGGTGACTTTGGtgtg
ggccgggaggaggagggaggggaggaggagccgagACCGGAGGTGGATCT
TAAGCctagggcggaggaggttccCACGGCGGGCGTCGAACGGCGGCGAA
GCCGGCGGGAAACCCGAGGCCGTCATTCGctccgggagggggaagaggag
ggagggttgcgGGGCTTGGGGCAGGGCTCGAACGCGAGTGTGATAAGTGG
AGGTAgtcagggaggacggcgagggccCAAGGGCGGGAAACAGGCGCGAT
CGGGGGGAAGCAACAGCAATAGCGGTGGCAAAGCCGCGCACGCCCAGCCA
CAGGACCTCCAATACTACGACATGGACGATTTtatggaaggggaaggggg
cagtGGGCCtgggaaaaaatgcgcgaaaaaATCACGGCGGGAATTGCCCA
ACGGGGCGGTGGCCACTTTGAAAGGCTGGCTGCTTTCCCCCGAGCACATC
GCCCATCCCTACCCAACGGCACAGGACCAAGTGGCGTTGATGGCGGCGAC
GGGCATCGACAAGAAGCAGTTGAAAAATTGGTTCACGAACGCGCGCCGAC
GCATTTGGAAACCAATGCTGCGGCGTCAGACGGACGAATCGGGGGGTCCG
GGGCGTGTctcgcgaggaggaggggcgggattGGACGGGGGAGGTGTGGG
GAATGGAGCAGGCTtgccaccttccccttcgtcctccaccgcgcgGGGGG
GGTTGGCCCCTGGGAGCCTGCAGCTCCCGCCCCACTACCATCCCTCCGGG
GCCCTTGCCCgatcaccctcccccctatCCCCTTCCGGGATGGGTTTggg
cagcccccccctccacaaCCACAGCGCCCTCGACAGTTTTACCAGCCGGA
GCGCGGCCGCTTCGCCCGAACCGTTTTCTCCCCGACTCTACCGGTCGGGT
CAGCAGCAGCTCCATACGTCTTCCCCGATCTCCCCCAGTGCCGccgaggc
ggccgccgccgccgcggtggCTTTCTCATCCcggcagcaccagcaacacC
ACCTGCTGAGCGAGCAtccgatggggggggggcacatGCCTGTTGccggg
atggggggggggaaagggtcgGGAACGGGCGTGTTTTATCCACGCCACAC
AAGCTCGggcctgccgccgccgccacagcAGCCCCCAAGCGCGACcacgg
ggggaggcgggggaggaatgaCGACCATGGGGTCGCTGGGCACCTTGAGT
GGCTTTGCGAGCGTGGAGGATTTTTTCAAGAATTTTCTCGGGGATGGGAG
CAACAGCCCCCTGAATGCggctgggaaggaaggaggccaaCCGGCGCTGA
TGAAAACGTTTTCTTCTCGGAGTTTCGGGAATTTTCGGACGAGTTCGTCC
TTGAGTGATTTTCCGCGAACGGATTCGTACGCGTTCCTGGAAGTGTTTTT
CAATGACGACGGCTTGGACggcttgggaggagggggagggcgggagggag
ggaaggggggagggagggaggagaacatcGGGTTGTCCATGGACGACGAC
ATGGTTCTGGGCGGAACGACGGGCACGGCGACGATGCAGGGCCccggcct
gggggggggcgtaaAGCGGGGCATCTCCAGCGTGtcggtgggggaagagg
agccagcCGCAGGCGCGAACTCCTCCAGGATGAAGCGTCAGGCACGCGAg
caggggcaaggaggctacgagtccttctcccccacgcccatgCTGGAAGC
GCAGGTggggtcggagggcgggacggagggcggggaacgGCCTCCTCATG
TGCCACTTCCAGCACTGCACCTGCCTGGCTCGAGGCCCTCCTCCGGAAGC
CACTCTCCTAGGAGCAGGTCCGGCTCTCCCCTGCACGcggggggtggggc
gggGCCTGTCTACCACGCTTTTTTCAAGGTGGGGAGCCACGGGAATGTGG
TCCCGTCCGGGGCCGTGATGGGCACCAGCGgggtctccttccctcatcct
cccgaGGGGGGTGCGCCGGGAATGGAGCaggtttcttcctccttgggagg
gaggggggagggagaaagcatTGGTGGGGGGCCAGGACCCAGTGGGGAAg
gcgttgggagggagggtggggttgGCAAGGGAGGCTTGAGCCGATCGCCG
ACCTTGCAAGAGGTGATGATGGAGCAGTATtaccagcaccaccagccGCC
TCCGTCCGGGCCTGACTCACACGCGTCTGcccgcccggcctcccccccct
cttcggAGCCTGTGCACGTCTCGACGGGGGCCCGCTGCCCCTTTTGCCCG
ACCTTGAGCGTGGACACTCAATTGCGACCCTGcggccacctcttccacgg
gAACTGCCTCAAACCCTGGCTCCAGAAatccccgtcgcccccgGCATGCC
CTGTGTGTCGCGAAAGCATTGCTTCCTGCGTGTTGGCCATTCCTTGCATT
GCCACGGGGGCCTCCTTCGACTCGTTGCCGCCCGTGGCGGgcgaaggcga
aggcgggggggcagggaggacggtggAAGGGCCCGagcatgggaaggaaa
ggctggaggcggagtcGTCGGCAGTGCAAATGGCGGGGAGCCACGTTTAA back to top
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