EWM27325.1, cds3354 (CDS) Nannochloropsis gaditana

Overview
NameEWM27325.1
Unique Namecds3354
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:221708..224557 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27325.1
ProductHomeodomain protein
Orig transcript idgnl|cribi|Naga_100192g4.10353.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:221708..224557 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR008422Homeobox_KN_domain
IPR009057Homeodomain-like
IPR001356Homeobox_dom
Homology
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|585109525|gb|EWM27325.1| (Homeodomain protein [Nannochloropsis gaditana])

HSP 1 Score: 1877.06 bits (4861), Expect = 0.000e+0
Identity = 949/949 (100.00%), Postives = 949/949 (100.00%), Query Frame = 0
Query:    1 MSTSPLSPTGNGVRGRSEGAGEDAGALRRWSKGGEECEGDQARGEDGKVGRRVDDDMLNYGDRRVDDDMLNYGDAKEKEDGHAETEEDEDGSQASGDFGVGREEEGGEEEPRPEVDLKPRAEEVPTAGVERRRSRRETRGRHSLREGEEEGGLRGLGQGSNASVISGGSQGGRRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPHYHPSGALARSPSPLSPSGMGLGSPPLHNHSALDSFTSRSAAASPEPFSPRLYRSGQQQLHTSSPISPSAAEAAAAAAVAFSSRQHQQHHLLSEHPMGGGHMPVAGMGGGKGSGTGVFYPRHTSSGLPPPPQQPPSATTGGGGGGMTTMGSLGTLSGFASVEDFFKNFLGDGSNSPLNAAGKEGGQPALMKTFSSRSFGNFRTSSSLSDFPRTDSYAFLEVFFNDDGLDGLGGGGGREGGKGGGREENIGLSMDDDMVLGGTTGTATMQGPGLGGGVKRGISSVSVGEEEPAAGANSSRMKRQAREQGQGGYESFSPTPMLEAQVGSEGGTEGGERPPHVPLPALHLPGSRPSSGSHSPRSRSGSPLHAGGGAGPVYHAFFKVGSHGNVVPSGAVMGTSGVSFPHPPEGGAPGMEQVSSSLGGRGEGESIGGGPGPSGEGVGREGGVGKGGLSRSPTLQEVMMEQYYQHHQPPPSGPDSHASARPASPPSSEPVHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIPCIATGASFDSLPPVAGEGEGGGAGRTVEGPEHGKERLEAESSAVQMAGSHV 949
            MSTSPLSPTGNGVRGRSEGAGEDAGALRRWSKGGEECEGDQARGEDGKVGRRVDDDMLNYGDRRVDDDMLNYGDAKEKEDGHAETEEDEDGSQASGDFGVGREEEGGEEEPRPEVDLKPRAEEVPTAGVERRRSRRETRGRHSLREGEEEGGLRGLGQGSNASVISGGSQGGRRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPHYHPSGALARSPSPLSPSGMGLGSPPLHNHSALDSFTSRSAAASPEPFSPRLYRSGQQQLHTSSPISPSAAEAAAAAAVAFSSRQHQQHHLLSEHPMGGGHMPVAGMGGGKGSGTGVFYPRHTSSGLPPPPQQPPSATTGGGGGGMTTMGSLGTLSGFASVEDFFKNFLGDGSNSPLNAAGKEGGQPALMKTFSSRSFGNFRTSSSLSDFPRTDSYAFLEVFFNDDGLDGLGGGGGREGGKGGGREENIGLSMDDDMVLGGTTGTATMQGPGLGGGVKRGISSVSVGEEEPAAGANSSRMKRQAREQGQGGYESFSPTPMLEAQVGSEGGTEGGERPPHVPLPALHLPGSRPSSGSHSPRSRSGSPLHAGGGAGPVYHAFFKVGSHGNVVPSGAVMGTSGVSFPHPPEGGAPGMEQVSSSLGGRGEGESIGGGPGPSGEGVGREGGVGKGGLSRSPTLQEVMMEQYYQHHQPPPSGPDSHASARPASPPSSEPVHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIPCIATGASFDSLPPVAGEGEGGGAGRTVEGPEHGKERLEAESSAVQMAGSHV
Sbjct:    1 MSTSPLSPTGNGVRGRSEGAGEDAGALRRWSKGGEECEGDQARGEDGKVGRRVDDDMLNYGDRRVDDDMLNYGDAKEKEDGHAETEEDEDGSQASGDFGVGREEEGGEEEPRPEVDLKPRAEEVPTAGVERRRSRRETRGRHSLREGEEEGGLRGLGQGSNASVISGGSQGGRRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPHYHPSGALARSPSPLSPSGMGLGSPPLHNHSALDSFTSRSAAASPEPFSPRLYRSGQQQLHTSSPISPSAAEAAAAAAVAFSSRQHQQHHLLSEHPMGGGHMPVAGMGGGKGSGTGVFYPRHTSSGLPPPPQQPPSATTGGGGGGMTTMGSLGTLSGFASVEDFFKNFLGDGSNSPLNAAGKEGGQPALMKTFSSRSFGNFRTSSSLSDFPRTDSYAFLEVFFNDDGLDGLGGGGGREGGKGGGREENIGLSMDDDMVLGGTTGTATMQGPGLGGGVKRGISSVSVGEEEPAAGANSSRMKRQAREQGQGGYESFSPTPMLEAQVGSEGGTEGGERPPHVPLPALHLPGSRPSSGSHSPRSRSGSPLHAGGGAGPVYHAFFKVGSHGNVVPSGAVMGTSGVSFPHPPEGGAPGMEQVSSSLGGRGEGESIGGGPGPSGEGVGREGGVGKGGLSRSPTLQEVMMEQYYQHHQPPPSGPDSHASARPASPPSSEPVHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIPCIATGASFDSLPPVAGEGEGGGAGRTVEGPEHGKERLEAESSAVQMAGSHV 949          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|397633253|gb|EJK70900.1| (hypothetical protein THAOC_07706, partial [Thalassiosira oceanica])

HSP 1 Score: 128.642 bits (322), Expect = 3.655e-30
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0
Query:  229 RRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTD 295
            RRELP GAVATLK WLLSPEH  HPYPT QDQV LM  TGIDKKQLKNWFTNARRRIWKPML++Q +
Sbjct:   64 RRELPAGAVATLKAWLLSPEHFTHPYPTPQDQVMLMQKTGIDKKQLKNWFTNARRRIWKPMLKKQLE 130          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1210518316|dbj|GAX22928.1| (hypothetical protein FisN_24Lh217 [Fistulifera solaris])

HSP 1 Score: 132.494 bits (332), Expect = 2.146e-28
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0
Query:  208 MDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTD 295
            M D  + +   G GK    KSRRELP GAVA LK WLLSPEH +HPYPT QDQ  LM  TGIDKKQLKNWFTNARRRIWKPML++Q +
Sbjct:    1 MSDDYDEDASIGDGKD-RNKSRRELPPGAVAALKAWLLSPEHFSHPYPTPQDQAMLMQKTGIDKKQLKNWFTNARRRIWKPMLKKQIE 87          

HSP 2 Score: 74.7146 bits (182), Expect = 4.941e-10
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0
Query:  838 VHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIP 898
            V V T  +C  C    VDTQLRPCGH+FH  CLKP LQ    PP CP+    + S VLA+P
Sbjct:  519 VQVPTTTKCALCMQTCVDTQLRPCGHMFHERCLKPSLQAPRGPPRCPIDDIPMHSAVLAVP 579          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1210523394|dbj|GAX17718.1| (hypothetical protein FisN_24Hh217 [Fistulifera solaris])

HSP 1 Score: 132.494 bits (332), Expect = 2.282e-28
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0
Query:  208 MDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTD 295
            M D  + +   G GK    KSRRELP GAVA LK WLLSPEH +HPYPT QDQ  LM  TGIDKKQLKNWFTNARRRIWKPML++Q +
Sbjct:    1 MSDDYDEDASIGDGKD-RNKSRRELPPGAVAALKAWLLSPEHFSHPYPTPQDQAMLMQKTGIDKKQLKNWFTNARRRIWKPMLKKQIE 87          

HSP 2 Score: 75.8702 bits (185), Expect = 2.337e-10
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0
Query:  838 VHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIP 898
            V V T  +C  C    VDTQLRPCGH+FH  CLKP LQ    PP CP+    + S VLA+P
Sbjct:  520 VQVPTTTKCALCMQTCVDTQLRPCGHMFHERCLKPSLQSPRGPPKCPIDDIPMHSAVLAVP 580          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1072224762|gb|OEU09511.1| (hypothetical protein FRACYDRAFT_165604, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 110.153 bits (274), Expect = 1.453e-25
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 0
Query:  232 LPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWK 287
            LP GAVATLK WLLSPEH  HPYPT QDQV LM  TGIDKKQLKNWFTNARRRIWK
Sbjct:    1 LPTGAVATLKTWLLSPEHFTHPYPTPQDQVMLMQKTGIDKKQLKNWFTNARRRIWK 56          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|635372136|emb|CCI39744.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 120.553 bits (301), Expect = 1.204e-24
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 0
Query:  175 GPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYD---MDDFMEGEGG-SGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQ 293
             PK     +   S  ++  + +   P D    D   MDD M+     S P   C KKSRRELP   VA LKGW+LSPEHI HPYPT  D+  L+  TG++ KQL NWFTNAR+RIWKPM+R+Q
Sbjct:   83 SPKQLCTNQDKRSTKDTLDRTSEHSPSDTHTNDGDFMDDSMQSSSDTSQPLNNC-KKSRRELPPQTVALLKGWMLSPEHIKHPYPTDADKQILLKETGLNMKQLTNWFTNARKRIWKPMMRQQ 204          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|635372135|emb|CCI39743.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 120.553 bits (301), Expect = 1.235e-24
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 0
Query:  175 GPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYD---MDDFMEGEGG-SGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQ 293
             PK     +   S  ++  + +   P D    D   MDD M+     S P   C KKSRRELP   VA LKGW+LSPEHI HPYPT  D+  L+  TG++ KQL NWFTNAR+RIWKPM+R+Q
Sbjct:   84 SPKQLCTNQDKRSTKDTLDRTSEHSPSDTHTNDGDFMDDSMQSSSDTSQPLNNC-KKSRRELPPQTVALLKGWMLSPEHIKHPYPTDADKQILLKETGLNMKQLTNWFTNARKRIWKPMMRQQ 205          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|325181215|emb|CCA15629.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325181856|emb|CCA16311.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 119.013 bits (297), Expect = 4.234e-24
Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 0
Query:  208 MDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDES----------GGPGRVS---RGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAP 337
            +DD M+    +       KK+RRELP   VA LKGW+LSPEHI HPYPT  D+  L+  TG++ KQL NWFTNAR+RIWKPM+R+Q  +S           GPG ++   R       G  V     + P  SS++ R    P
Sbjct:  138 VDDSMQSSSETSQSLNNCKKARRELPPQTVALLKGWMLSPEHIKHPYPTDADKQILLKQTGLNMKQLTNWFTNARKRIWKPMMRQQQTKSMHDLAQFDTPFGPGPINVHRREPFRHFCGDKVYASNFVAPFESSNSIRQTFQP 280          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1214713750|gb|OWZ24631.1| (Homebox and aldo/keto reductase [Phytophthora megakarya])

HSP 1 Score: 112.849 bits (281), Expect = 3.571e-22
Identity = 57/121 (47.11%), Postives = 68/121 (56.20%), Query Frame = 0
Query:  173 RRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQ 293
            R+ P     A + GS   S  KA   QPQ                       +KKSRRELP   VA LKGW+LS EH+ HPYPT +D+  L+  TGI  KQL NWFTNAR+RIWKPM+RR+
Sbjct:   46 RKQPSSPTDAGANGSTDGSDDKAKEQQPQ----------------------PSKKSRRELPPHTVAILKGWMLSREHVKHPYPTDEDKQMLLKKTGISMKQLTNWFTNARKRIWKPMMRRE 144          
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|695387807|ref|XP_009519001.1| (homebox domain-containing protein [Phytophthora sojae] >gi|348683898|gb|EGZ23713.1| homebox domain-containing protein [Phytophthora sojae])

HSP 1 Score: 112.849 bits (281), Expect = 4.153e-22
Identity = 62/130 (47.69%), Postives = 74/130 (56.92%), Query Frame = 0
Query:  222 KKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRR------QTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPH 345
            ++ +KKSRRELP   VA LKGW+LS EH+ HPYPT +D+  L+  TGI  KQL NWFTNAR+RIWKPM+RR      Q+        V    GAGL      +     P P   T R     GSL  PPH
Sbjct:   71 QQPSKKSRRELPPHTVAILKGWMLSREHVKHPYPTDEDKQMLLKKTGISMKQLTNWFTNARKRIWKPMMRREHSRQLQSAMEFDHTAVREFPGAGLSQQYADSSYA--PRP---TVRHSFDAGSLGAPPH 195          
The following BLAST results are available for this feature:
BLAST of EWM27325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109525|gb|EWM27325.1|0.000e+0100.00Homeodomain protein [Nannochloropsis gaditana][more]
gi|397633253|gb|EJK70900.1|3.655e-3082.09hypothetical protein THAOC_07706, partial [Thalass... [more]
gi|1210518316|dbj|GAX22928.1|2.146e-2868.18hypothetical protein FisN_24Lh217 [Fistulifera sol... [more]
gi|1210523394|dbj|GAX17718.1|2.282e-2868.18hypothetical protein FisN_24Hh217 [Fistulifera sol... [more]
gi|1072224762|gb|OEU09511.1|1.453e-2585.71hypothetical protein FRACYDRAFT_165604, partial [F... [more]
gi|635372136|emb|CCI39744.1|1.204e-2448.78unnamed protein product [Albugo candida][more]
gi|635372135|emb|CCI39743.1|1.235e-2448.78unnamed protein product [Albugo candida][more]
gi|325181215|emb|CCA15629.1|4.234e-2442.66conserved hypothetical protein [Albugo laibachii N... [more]
gi|1214713750|gb|OWZ24631.1|3.571e-2247.11Homebox and aldo/keto reductase [Phytophthora mega... [more]
gi|695387807|ref|XP_009519001.1|4.153e-2247.69homebox domain-containing protein [Phytophthora so... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3363rna3363Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications