EWM27325.1, cds3354 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|585109525|gb|EWM27325.1| (Homeodomain protein [Nannochloropsis gaditana]) HSP 1 Score: 1877.06 bits (4861), Expect = 0.000e+0 Identity = 949/949 (100.00%), Postives = 949/949 (100.00%), Query Frame = 0
Query: 1 MSTSPLSPTGNGVRGRSEGAGEDAGALRRWSKGGEECEGDQARGEDGKVGRRVDDDMLNYGDRRVDDDMLNYGDAKEKEDGHAETEEDEDGSQASGDFGVGREEEGGEEEPRPEVDLKPRAEEVPTAGVERRRSRRETRGRHSLREGEEEGGLRGLGQGSNASVISGGSQGGRRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPHYHPSGALARSPSPLSPSGMGLGSPPLHNHSALDSFTSRSAAASPEPFSPRLYRSGQQQLHTSSPISPSAAEAAAAAAVAFSSRQHQQHHLLSEHPMGGGHMPVAGMGGGKGSGTGVFYPRHTSSGLPPPPQQPPSATTGGGGGGMTTMGSLGTLSGFASVEDFFKNFLGDGSNSPLNAAGKEGGQPALMKTFSSRSFGNFRTSSSLSDFPRTDSYAFLEVFFNDDGLDGLGGGGGREGGKGGGREENIGLSMDDDMVLGGTTGTATMQGPGLGGGVKRGISSVSVGEEEPAAGANSSRMKRQAREQGQGGYESFSPTPMLEAQVGSEGGTEGGERPPHVPLPALHLPGSRPSSGSHSPRSRSGSPLHAGGGAGPVYHAFFKVGSHGNVVPSGAVMGTSGVSFPHPPEGGAPGMEQVSSSLGGRGEGESIGGGPGPSGEGVGREGGVGKGGLSRSPTLQEVMMEQYYQHHQPPPSGPDSHASARPASPPSSEPVHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIPCIATGASFDSLPPVAGEGEGGGAGRTVEGPEHGKERLEAESSAVQMAGSHV 949
MSTSPLSPTGNGVRGRSEGAGEDAGALRRWSKGGEECEGDQARGEDGKVGRRVDDDMLNYGDRRVDDDMLNYGDAKEKEDGHAETEEDEDGSQASGDFGVGREEEGGEEEPRPEVDLKPRAEEVPTAGVERRRSRRETRGRHSLREGEEEGGLRGLGQGSNASVISGGSQGGRRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPHYHPSGALARSPSPLSPSGMGLGSPPLHNHSALDSFTSRSAAASPEPFSPRLYRSGQQQLHTSSPISPSAAEAAAAAAVAFSSRQHQQHHLLSEHPMGGGHMPVAGMGGGKGSGTGVFYPRHTSSGLPPPPQQPPSATTGGGGGGMTTMGSLGTLSGFASVEDFFKNFLGDGSNSPLNAAGKEGGQPALMKTFSSRSFGNFRTSSSLSDFPRTDSYAFLEVFFNDDGLDGLGGGGGREGGKGGGREENIGLSMDDDMVLGGTTGTATMQGPGLGGGVKRGISSVSVGEEEPAAGANSSRMKRQAREQGQGGYESFSPTPMLEAQVGSEGGTEGGERPPHVPLPALHLPGSRPSSGSHSPRSRSGSPLHAGGGAGPVYHAFFKVGSHGNVVPSGAVMGTSGVSFPHPPEGGAPGMEQVSSSLGGRGEGESIGGGPGPSGEGVGREGGVGKGGLSRSPTLQEVMMEQYYQHHQPPPSGPDSHASARPASPPSSEPVHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIPCIATGASFDSLPPVAGEGEGGGAGRTVEGPEHGKERLEAESSAVQMAGSHV
Sbjct: 1 MSTSPLSPTGNGVRGRSEGAGEDAGALRRWSKGGEECEGDQARGEDGKVGRRVDDDMLNYGDRRVDDDMLNYGDAKEKEDGHAETEEDEDGSQASGDFGVGREEEGGEEEPRPEVDLKPRAEEVPTAGVERRRSRRETRGRHSLREGEEEGGLRGLGQGSNASVISGGSQGGRRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPHYHPSGALARSPSPLSPSGMGLGSPPLHNHSALDSFTSRSAAASPEPFSPRLYRSGQQQLHTSSPISPSAAEAAAAAAVAFSSRQHQQHHLLSEHPMGGGHMPVAGMGGGKGSGTGVFYPRHTSSGLPPPPQQPPSATTGGGGGGMTTMGSLGTLSGFASVEDFFKNFLGDGSNSPLNAAGKEGGQPALMKTFSSRSFGNFRTSSSLSDFPRTDSYAFLEVFFNDDGLDGLGGGGGREGGKGGGREENIGLSMDDDMVLGGTTGTATMQGPGLGGGVKRGISSVSVGEEEPAAGANSSRMKRQAREQGQGGYESFSPTPMLEAQVGSEGGTEGGERPPHVPLPALHLPGSRPSSGSHSPRSRSGSPLHAGGGAGPVYHAFFKVGSHGNVVPSGAVMGTSGVSFPHPPEGGAPGMEQVSSSLGGRGEGESIGGGPGPSGEGVGREGGVGKGGLSRSPTLQEVMMEQYYQHHQPPPSGPDSHASARPASPPSSEPVHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIPCIATGASFDSLPPVAGEGEGGGAGRTVEGPEHGKERLEAESSAVQMAGSHV 949
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|397633253|gb|EJK70900.1| (hypothetical protein THAOC_07706, partial [Thalassiosira oceanica]) HSP 1 Score: 128.642 bits (322), Expect = 3.655e-30 Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0
Query: 229 RRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTD 295
RRELP GAVATLK WLLSPEH HPYPT QDQV LM TGIDKKQLKNWFTNARRRIWKPML++Q +
Sbjct: 64 RRELPAGAVATLKAWLLSPEHFTHPYPTPQDQVMLMQKTGIDKKQLKNWFTNARRRIWKPMLKKQLE 130
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1210518316|dbj|GAX22928.1| (hypothetical protein FisN_24Lh217 [Fistulifera solaris]) HSP 1 Score: 132.494 bits (332), Expect = 2.146e-28 Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 208 MDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTD 295
M D + + G GK KSRRELP GAVA LK WLLSPEH +HPYPT QDQ LM TGIDKKQLKNWFTNARRRIWKPML++Q +
Sbjct: 1 MSDDYDEDASIGDGKD-RNKSRRELPPGAVAALKAWLLSPEHFSHPYPTPQDQAMLMQKTGIDKKQLKNWFTNARRRIWKPMLKKQIE 87 HSP 2 Score: 74.7146 bits (182), Expect = 4.941e-10 Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0
Query: 838 VHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIP 898
V V T +C C VDTQLRPCGH+FH CLKP LQ PP CP+ + S VLA+P
Sbjct: 519 VQVPTTTKCALCMQTCVDTQLRPCGHMFHERCLKPSLQAPRGPPRCPIDDIPMHSAVLAVP 579
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1210523394|dbj|GAX17718.1| (hypothetical protein FisN_24Hh217 [Fistulifera solaris]) HSP 1 Score: 132.494 bits (332), Expect = 2.282e-28 Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 208 MDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTD 295
M D + + G GK KSRRELP GAVA LK WLLSPEH +HPYPT QDQ LM TGIDKKQLKNWFTNARRRIWKPML++Q +
Sbjct: 1 MSDDYDEDASIGDGKD-RNKSRRELPPGAVAALKAWLLSPEHFSHPYPTPQDQAMLMQKTGIDKKQLKNWFTNARRRIWKPMLKKQIE 87 HSP 2 Score: 75.8702 bits (185), Expect = 2.337e-10 Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0
Query: 838 VHVSTGARCPFCPTLSVDTQLRPCGHLFHGNCLKPWLQKSPSPPACPVCRESIASCVLAIP 898
V V T +C C VDTQLRPCGH+FH CLKP LQ PP CP+ + S VLA+P
Sbjct: 520 VQVPTTTKCALCMQTCVDTQLRPCGHMFHERCLKPSLQSPRGPPKCPIDDIPMHSAVLAVP 580
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1072224762|gb|OEU09511.1| (hypothetical protein FRACYDRAFT_165604, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 110.153 bits (274), Expect = 1.453e-25 Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 0
Query: 232 LPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWK 287
LP GAVATLK WLLSPEH HPYPT QDQV LM TGIDKKQLKNWFTNARRRIWK
Sbjct: 1 LPTGAVATLKTWLLSPEHFTHPYPTPQDQVMLMQKTGIDKKQLKNWFTNARRRIWK 56
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|635372136|emb|CCI39744.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 120.553 bits (301), Expect = 1.204e-24 Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 0
Query: 175 GPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYD---MDDFMEGEGG-SGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQ 293
PK + S ++ + + P D D MDD M+ S P C KKSRRELP VA LKGW+LSPEHI HPYPT D+ L+ TG++ KQL NWFTNAR+RIWKPM+R+Q
Sbjct: 83 SPKQLCTNQDKRSTKDTLDRTSEHSPSDTHTNDGDFMDDSMQSSSDTSQPLNNC-KKSRRELPPQTVALLKGWMLSPEHIKHPYPTDADKQILLKETGLNMKQLTNWFTNARKRIWKPMMRQQ 204
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|635372135|emb|CCI39743.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 120.553 bits (301), Expect = 1.235e-24 Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 0
Query: 175 GPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYD---MDDFMEGEGG-SGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQ 293
PK + S ++ + + P D D MDD M+ S P C KKSRRELP VA LKGW+LSPEHI HPYPT D+ L+ TG++ KQL NWFTNAR+RIWKPM+R+Q
Sbjct: 84 SPKQLCTNQDKRSTKDTLDRTSEHSPSDTHTNDGDFMDDSMQSSSDTSQPLNNC-KKSRRELPPQTVALLKGWMLSPEHIKHPYPTDADKQILLKETGLNMKQLTNWFTNARKRIWKPMMRQQ 205
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|325181215|emb|CCA15629.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325181856|emb|CCA16311.1| conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 119.013 bits (297), Expect = 4.234e-24 Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 0
Query: 208 MDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQTDES----------GGPGRVS---RGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAP 337
+DD M+ + KK+RRELP VA LKGW+LSPEHI HPYPT D+ L+ TG++ KQL NWFTNAR+RIWKPM+R+Q +S GPG ++ R G V + P SS++ R P
Sbjct: 138 VDDSMQSSSETSQSLNNCKKARRELPPQTVALLKGWMLSPEHIKHPYPTDADKQILLKQTGLNMKQLTNWFTNARKRIWKPMMRQQQTKSMHDLAQFDTPFGPGPINVHRREPFRHFCGDKVYASNFVAPFESSNSIRQTFQP 280
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|1214713750|gb|OWZ24631.1| (Homebox and aldo/keto reductase [Phytophthora megakarya]) HSP 1 Score: 112.849 bits (281), Expect = 3.571e-22 Identity = 57/121 (47.11%), Postives = 68/121 (56.20%), Query Frame = 0
Query: 173 RRGPKGGKQARSGGSNSNSGGKAAHAQPQDLQYYDMDDFMEGEGGSGPGKKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRRQ 293
R+ P A + GS S KA QPQ +KKSRRELP VA LKGW+LS EH+ HPYPT +D+ L+ TGI KQL NWFTNAR+RIWKPM+RR+
Sbjct: 46 RKQPSSPTDAGANGSTDGSDDKAKEQQPQ----------------------PSKKSRRELPPHTVAILKGWMLSREHVKHPYPTDEDKQMLLKKTGISMKQLTNWFTNARKRIWKPMMRRE 144
BLAST of EWM27325.1 vs. NCBI_GenBank
Match: gi|695387807|ref|XP_009519001.1| (homebox domain-containing protein [Phytophthora sojae] >gi|348683898|gb|EGZ23713.1| homebox domain-containing protein [Phytophthora sojae]) HSP 1 Score: 112.849 bits (281), Expect = 4.153e-22 Identity = 62/130 (47.69%), Postives = 74/130 (56.92%), Query Frame = 0
Query: 222 KKCAKKSRRELPNGAVATLKGWLLSPEHIAHPYPTAQDQVALMAATGIDKKQLKNWFTNARRRIWKPMLRR------QTDESGGPGRVSRGGGAGLDGGGVGNGAGLPPSPSSSTARGGLAPGSLQLPPH 345
++ +KKSRRELP VA LKGW+LS EH+ HPYPT +D+ L+ TGI KQL NWFTNAR+RIWKPM+RR Q+ V GAGL + P P T R GSL PPH
Sbjct: 71 QQPSKKSRRELPPHTVAILKGWMLSREHVKHPYPTDEDKQMLLKKTGISMKQLTNWFTNARKRIWKPMMRREHSRQLQSAMEFDHTAVREFPGAGLSQQYADSSYA--PRP---TVRHSFDAGSLGAPPH 195 The following BLAST results are available for this feature:
BLAST of EWM27325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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