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Properties
| Property Name | Value |
|---|
| Product | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG |
| Orig transcript id | gnl|cribi|Naga_100192g5.10350.mrna |
| Orig protein id | gnl|cribi|Naga_100192g5.10350 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:217857..220311 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3361 ID=rna3361|Name=rna3361|organism=Nannochloropsis gaditana|type=mRNA|length=2494bp
ACGAGAGCCATGACCCTCCTACCACCTCATTCACACACCTTTATACACAC
ACAGATCCACTATCAACAACGATGGTACCCCGCTACGCTGTGGTGGTCTG
TCGGATATCGCGGGGTACCCAGTAGCTTGTCGTCGACGCTCAAGTGTATT
TCCTGTGACATTTGCTGGCGCGCTACACAGCCAAAGAGACAGAAACCCTA
TCACAGACTTGAAGCCTGGCAGGAGCTAGGGGTAGCTAGCATGCGTTTTT
CCCTCCTGACTCTTCTGTTACTGCTACACCAAAGTCGAGGCTTTTTTTGG
CTCCCAGCAGCACCAGGTTTACTCCTTGAGAGGTTTCGGGGTAGGTCTCC
TTTCCGTGTGCCCTTGAGAGTCGCCGCCAGCTCCCGTGGGCTACCTGAGG
ATGACCCGACGTCCCCCCTCCCAATTCTTCCTCCCGGCTTGGAGAACTTC
CGGCGCTTGCTCTCCTCCCTTCCCACCGATGACGAGAGTAAGGCGCAGAG
TTTGTATTTGATCTCCTTGGGAGACCAGTACGCGGCTGCCACTGCTCGCT
CCATCGCCTCGAGGGGAGGGAGACGGGTCCCGGGTTGTGTGTCTGTGGTG
CACATGACGGTACGTTTTTCCTCCGACGGTTCCGCAGTTCACGTGGACGG
CATCTCCGATGCGCGTCTTTCCTACGGCCTTGTCGCTTTGGTCGCGCAAG
GGTTGACTGGAGAATCGCCCGAGACCATCTTATCCTTGGAGCCCACTACC
TTACCCAAAGCCTTGGGGTTGACGGGAGGCATGATGCAACAGGCACCCGG
GCGTCACAACGGCCTCGCCAACATCGTGCAGACGGTGCAAGACGAGGTCC
TCGCGCGGCTCCATGAGTCTCGTGTCCCGGATTTCCAGGGAGAAAGAGGG
GCCAGGGAGGCAATTTTGGCGGCCCCTGCGGAGCGGCCCATGCTCACCAC
AGCCGGAACCAAGGAGTTTGCAGTCCCTGTCGCCGTCGATCCCAGCCATG
CCGCGCCTACCCCAGCCATTTCCTTCCCCACCCCCGCCCAGCTCCCCCTC
CTTACCCACTCTTTCCCCTCCGAGGAGGTGGCAGTCCTGCTTTCCGGGGG
GGTCGACTCCTCCGTCGCCCTCCATCTTCTCCAACAGCAAGGCTACAAAC
CCCACGCCTTCTACCTGAAAATATGGCTGGAAGACGAACTGGCCCACCTG
AATCAGTGCCCCTGGGAGGAAGACTGGTCTTTCGCCTCGGCCGTCTGCCG
CCAGGCCGGGAACGTCCCCTTGGAAGCGCTCCCCTTGCAGAAGGAGTATT
GGGCCCAGGTGGTCGCACACACGATCCAGGAGGCCAAGGAAGGACGGACG
CCCAACCCTGACATCCTCTGCAATTCTCTGGTCAAATTTGGCGTTTTTTA
CGACGTGATGGGCCGGCGGTATCCTAAGGTGGCTACCGGGCACTACGCAC
GGGCGGTGCCTGCAGCCGGGGGGAAGGAAGGGGAGGGACTGGTGCGACTG
ATGCGTTCGCCGGACAGGATCAAAGATCAAACATATTTCCTGAGCCGGCT
GACACAAGAACAGCTGGCCAGGGCCACCTTTCCGATTGGTGGGTACGAGA
AACATCAGATTCGAGCCATGGCGGAACGCCTGGATTTGCCGACCAAGACA
CGCAAGGATTCGCAAGGGATCTGTTTCTTAGGCAAACTCCGCTTTGACGA
CTTTTTGCGCCATTATTTGGGGGAATCGCCCGGGGAGGTGGTGTGGTTGG
AGGAGGATGTGGTCGTGGGAAAGCACCAAGGTCTCTGGTTCCACACGATC
GGGCAACGGAAGGGCATCGTTCCCACCCTGACCAATGCGTACCGTCCCCT
GGGCCCCTGGTACGTGGCGGCTAAGGACGTGGGGCGAAATGTCTTGTTTG
TGACGAATAGCCCCGAGTCCCTGTCGGAGGTGGGCACGGGGGAGGGACCG
GGGGAGGAGGCGCGACGGACGTTTCGGGTGGACGGCATGACCTGGGTTCG
AGGGGCGCCGCCGCCCGAGTTGCTGGTACCTGGCGCCAGCCTCATGCTGG
AGGTCCAGGTCCGACACGGCCCTAATTCCCATCGAGGATCGCGGGTTCGA
ATCCTGGACGACGGGAGGGGGGAAGGGCCGAGCTCGTTGGAGATTACCCT
GCCAAGGGAGGACAGTCTGGCACCGGGGCAGTATGCGGCCTTGTATCAAG
ACGTCGGAGAGGAGGGAAGTGAGTGCCTGGGGGCAGGAGTTATCTCCGAA
GAGACCTGGCGGATACCTCAAGCGCCAGCGCGGTTGACGGTCAACAGGAG
GTAGATGATTAGCTTGCACAAAGTATACACTTGATGTTTTCAAACGTTTT
GAGGGTTGCATTCCGCGAGGGGAGTTTGGTTTCATATTGTGTGATGATTT
CTCGGGCCACATCTTGTGTGTCATCAAAACATAAGGGGACGTGGTACGTG
GCGCGCTTGATTTCTTTTTCATTCGTAGGACTCCATTTGCAATC back to topprotein sequence of rna3361 >rna3361-protein ID=rna3361-protein|Name=rna3361|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MASPAPEKKYTMAVKAYKNPDFLNSGHARFIRVMCEYEETMYRLKAYGVK
STILFFGSARAKSREQYDHRMGELVEALAGAVTEQEQKDAEAAIATLRKT
EWLTEYFDKVTELSKRLTDWSLQSEHKLAQARTYTGVTRYHLKTRGPVPH
QSYSIIDEDVKEHPEQSIYITTGGGPGFMEAANKGASEVPGALTIGMGIT
LPFEDGLNPYVSEELAFEFHYFFTRKFWMVYHCQALVVAPGGMGTLDELF
EVLTLKQTGKVQPDMPVVLFGKEFWKSIISWDALADYGVISQVRRGGVKV
FGKLVWNPCDDVRVGDSSCSLSVSSVPVRFG back to topmRNA from alignment at CM002461.1:217857..220311+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3361 ID=rna3361|Name=rna3361|organism=Nannochloropsis gaditana|type=mRNA|length=2455bp|location=Sequence derived from alignment at CM002461.1:217857..220311+ (Nannochloropsis gaditana)
CCCTTGTACAGTCCCATTTTTCAGACGAAAATGGCGTCACCGGCTCCCGA
GAAGAAATACACCATGGCTGTGAAGGCCTATAAGAACCCTGACTTTCTCA
ATTCAGGTCATGCCCGCTTTATTCGTGTCATGTGCGAATACGAGGTACGT
TGTCTGGGAGTTCTCCGAGGGCCCCTCACGCACCTGCGGTGTCGTGTCCG
TCACTGCACGCACCCGCTATCCGCCGTACGCTGGATGTACGCTGTATGGC
CGTCATGCATCTCACTAGAAACATCCATTTTcccattctttccctttccc
tcgcggCCTatgcccctcgtcctctcctgcgTCATCGCCGTGCTCGTGCC
TGGGTAGGAAACGATGTACCGCCTGAAAGCCTACGGCGTGAAAAGCACCA
TTCTGTTCTTCGGTTCTGCTCGGGCTAAAAGCAGGGAACAATACGATCAC
AGAATGGGGGAACTGGTGGAAGCgctggcgggggcggtgACGGAACAGGA
GCAGAAAGacgcggaggcggccatcgccaccttACGGAAGACCGAATGGC
TCACCGAGTATTTTGACAAAGTAAGCCGAGGGGGAATAAGGAACAAGTGG
CGCGACgcggatggaaggaaggggcgaaaGGGTGGACGCAGCCATGATGA
AGGAGACGGTTTACGGGACAGGGCACATGGATGAGAAGTTCCTTGCCTGc
cccctctttttcaaccgccctcccttcctctcccccatcccccacaCCTG
ACACTTTCCAGGTGACGGAACTCTCGAAGCGCCTGACAGACTGGTCCTTG
CAGTCGGAGCACAAGCTGGCCCAGGCACGCACGTACACGGGCGTGACCCG
ATACCACCTCAAAACTCGGGGGCCCGTCCCGCACCAGTCCTACTCCATCA
TCGACGAGGACGTCAAGGAGCATCCGGAGCAAAGTATTTATATCACCACG
GGGGGCGGGCCAGGCTtcatggaggcggcgaacAAGGGCGCAAGCGAGGT
GCCAGGGGCGCTGACGAtcgggtagggagggagggaaggaggtatgGGGA
TTGGGGGGAGAttagaggggaggagaggatgggagagaaCGCTTAAGGCC
TCTTGAAGGCCGAAGCAGGGAGTGCGTCGAAGGGATATGGAAGAAAAGTT
CGAAAGAGGGAGTttccctgccgccctcccacctcccctacACCCCACTG
GGCTaatctgtccctccctccccccgtccccgcctcctccttaatccctc
gctccctcccttgcccagGATGGGCATCACTCTCCCCTTCGAGGACGGTC
TCAACCCTTACGTGTCCGAGGAGCTGGCGTTTGAGTTCCATTACTTCTTC
ACTCGGAAGTTCTGGATGGTGTACCACTGTCAGGTAAGTCTgggtcctct
cccccatccctcccttccccctttgcTTTTGTCCTGCTTCCGCCTTGGCC
AAAGATGGGTGGTCAGAGGGGCGATCGTGATTGAGTACGTGTCATTGCCC
TTCCCTGGCCATCATTTGTATGCCCctcggcgcctccctcccgccctccg
tccgtcCTTCAGGCTCTTGTGGTCGCCCCCGGTGGTATGGGCACTCTTGA
TGAGCTATTTGAGGTCCTGACCCTGAAACAAACGGGAAAGGTGCAGCCAG
ACATGCCGGTCGTCCTGTTCGGGAAGGAGTTTTGGAAAAGCATCATCAGT
TGGGACGCGCTGGCGGACTACGGGGTCATTTCCCAGgtgcggaggggagg
tgTGAAGGTTTTTGGGAAGCTAGTTTGGAATCCTTGCGATGACGTGCGCG
TGGGTGATTCATCCTGTTCGCTTAGCGTTTCTAGCGTTCCCGTAAGATTT
GGTTAGGACAGGGACTAAGCACGAATCCATGTCTCACATATGACGCCGTC
TATCTCTTTCACGTCTCTACTCACACGATGTTTTGGCTCGTGACTCGCGC
ACAGAAAGATGTTTCTGGGCTTTTTTTCGCGGACACTGTGGACGAGGCCT
TTGATTACCTCCTCTCCAGACTCACGAAGGTGGGTATGGCATGGGCGAGG
ATGATGTTGGCCGGAGACGCCTGCAAGACAGCGACAAGACTGAGAGGAAG
TGTTGATTGTCGAAGCAGGGGAGTGTATTGCGCTCGTTCTATAGTGGTTT
CTATGGGCCGCTACTTCATGCGTACTCTTCTGACCCGCATCCGCCTCCTT
ATACTTTTTGTAGGCCCCGCTCAACGACATTTTCAAGGAATTTGACGGTG
ATAAGCAGGCGATGGATAACACGGAGAGTGTTGTAGCATAATCTGGGGGA
TCTTGTTGCATGACACAGCGCGAgtgagaggaaaggcggatGGCCTGTAA
GAGTTTTTTCCTCAGGGTCTTTGAAAACGAGCTGAGTAGTCTTCTGGATG
AGAGCATGGAAAGGGCGATTGAAAAGAAGTCCCAAACGACGACTTAAATT
TGAAA back to topCoding sequence (CDS) from alignment at CM002461.1:217857..220311+ >rna3361 ID=rna3361|Name=rna3361|organism=Nannochloropsis gaditana|type=CDS|length=4980bp|location=Sequence derived from alignment at CM002461.1:217857..220311+ (Nannochloropsis gaditana)
ATGGCGTCACCGGCTCCCGAGAAGAAATACACCATGGCTGTGAAGGCCTA
TAAGAACCCTGACTTTCTCAATTCAGGTCATGCCCGCTTTATTCGTGTCA
TGTGCGAATACGAGGAAACGATGTACCGCCTGAAAGCCTACGGCGTGAAA
AGCACCATTCTGTTCTTCGGTTCTGCTCGGGCTAAAAGCAGGGAACAATA
CGATCACAGAATGGGGGAACTGGTGGAAGCgctggcgggggcggtgACGG
AACAGGAGCAGAAAGacgcggaggcggccatcgccaccttACGGAAGACC
GAATGGCTCACCGAGTATTTTGACAAAGTGACGGAACTCTCGAAGCGCCT
GACAGACTGGTCCTTGCAGTCGGAGCACAAGCTGGCCCAGGCACGCACGT
ACACGGGCGTGACCCGATACCACCTCAAAACTCGGGGGCCCGTCCCGCAC
CAGTCCTACTCCATCATCGACGAGGACGTCAAGGAGCATCCGGAGCAAAG
TATTTATATCACCACGGGGGGCGGGCCAGGCTtcatggaggcggcgaacA
AGGGCGCAAGCGAGGTGCCAGGGGCGCTGACGAtcggGATGGGCATCACT
CTCCCCTTCGAGGACGGTCTCAACCCTTACGTGTCCGAGGAGCTGGCGTT
TGAGTTCCATTACTTCTTCACTCGGAAGTTCTGGATGGTGTACCACTGTC
AGGCTCTTGTGGTCGCCCCCGGTGGTATGGGCACTCTTGATGAGCTATTT
GAGGTCCTGACCCTGAAACAAACGGGAAAGGTGCAGCCAGACATGCCGGT
CGTCCTGTTCGGGAAGGAGTTTTGGAAAAGCATCATCAGTTGGGACGCGC
TGGCGGACTACGGGGTCATTTCCCAGgtgcggaggggaggtgTGAAGGTT
TTTGGGAAGCTAGTTTGGAATCCTTGCGATGACGTGCGCGTGGGTGATTC
ATCCTGTTCGCTTAGCGTTTCTAGCGTTCCCGTAAGATTTGGTTAGATGG
CGTCACCGGCTCCCGAGAAGAAATACACCATGGCTGTGAAGGCCTATAAG
AACCCTGACTTTCTCAATTCAGGTCATGCCCGCTTTATTCGTGTCATGTG
CGAATACGAGGAAACGATGTACCGCCTGAAAGCCTACGGCGTGAAAAGCA
CCATTCTGTTCTTCGGTTCTGCTCGGGCTAAAAGCAGGGAACAATACGAT
CACAGAATGGGGGAACTGGTGGAAGCgctggcgggggcggtgACGGAACA
GGAGCAGAAAGacgcggaggcggccatcgccaccttACGGAAGACCGAAT
GGCTCACCGAGTATTTTGACAAAGTGACGGAACTCTCGAAGCGCCTGACA
GACTGGTCCTTGCAGTCGGAGCACAAGCTGGCCCAGGCACGCACGTACAC
GGGCGTGACCCGATACCACCTCAAAACTCGGGGGCCCGTCCCGCACCAGT
CCTACTCCATCATCGACGAGGACGTCAAGGAGCATCCGGAGCAAAGTATT
TATATCACCACGGGGGGCGGGCCAGGCTtcatggaggcggcgaacAAGGG
CGCAAGCGAGGTGCCAGGGGCGCTGACGAtcggGATGGGCATCACTCTCC
CCTTCGAGGACGGTCTCAACCCTTACGTGTCCGAGGAGCTGGCGTTTGAG
TTCCATTACTTCTTCACTCGGAAGTTCTGGATGGTGTACCACTGTCAGGC
TCTTGTGGTCGCCCCCGGTGGTATGGGCACTCTTGATGAGCTATTTGAGG
TCCTGACCCTGAAACAAACGGGAAAGGTGCAGCCAGACATGCCGGTCGTC
CTGTTCGGGAAGGAGTTTTGGAAAAGCATCATCAGTTGGGACGCGCTGGC
GGACTACGGGGTCATTTCCCAGgtgcggaggggaggtgTGAAGGTTTTTG
GGAAGCTAGTTTGGAATCCTTGCGATGACGTGCGCGTGGGTGATTCATCC
TGTTCGCTTAGCGTTTCTAGCGTTCCCGTAAGATTTGGTTAGATGGCGTC
ACCGGCTCCCGAGAAGAAATACACCATGGCTGTGAAGGCCTATAAGAACC
CTGACTTTCTCAATTCAGGTCATGCCCGCTTTATTCGTGTCATGTGCGAA
TACGAGGAAACGATGTACCGCCTGAAAGCCTACGGCGTGAAAAGCACCAT
TCTGTTCTTCGGTTCTGCTCGGGCTAAAAGCAGGGAACAATACGATCACA
GAATGGGGGAACTGGTGGAAGCgctggcgggggcggtgACGGAACAGGAG
CAGAAAGacgcggaggcggccatcgccaccttACGGAAGACCGAATGGCT
CACCGAGTATTTTGACAAAGTGACGGAACTCTCGAAGCGCCTGACAGACT
GGTCCTTGCAGTCGGAGCACAAGCTGGCCCAGGCACGCACGTACACGGGC
GTGACCCGATACCACCTCAAAACTCGGGGGCCCGTCCCGCACCAGTCCTA
CTCCATCATCGACGAGGACGTCAAGGAGCATCCGGAGCAAAGTATTTATA
TCACCACGGGGGGCGGGCCAGGCTtcatggaggcggcgaacAAGGGCGCA
AGCGAGGTGCCAGGGGCGCTGACGAtcggGATGGGCATCACTCTCCCCTT
CGAGGACGGTCTCAACCCTTACGTGTCCGAGGAGCTGGCGTTTGAGTTCC
ATTACTTCTTCACTCGGAAGTTCTGGATGGTGTACCACTGTCAGGCTCTT
GTGGTCGCCCCCGGTGGTATGGGCACTCTTGATGAGCTATTTGAGGTCCT
GACCCTGAAACAAACGGGAAAGGTGCAGCCAGACATGCCGGTCGTCCTGT
TCGGGAAGGAGTTTTGGAAAAGCATCATCAGTTGGGACGCGCTGGCGGAC
TACGGGGTCATTTCCCAGgtgcggaggggaggtgTGAAGGTTTTTGGGAA
GCTAGTTTGGAATCCTTGCGATGACGTGCGCGTGGGTGATTCATCCTGTT
CGCTTAGCGTTTCTAGCGTTCCCGTAAGATTTGGTTAGATGGCGTCACCG
GCTCCCGAGAAGAAATACACCATGGCTGTGAAGGCCTATAAGAACCCTGA
CTTTCTCAATTCAGGTCATGCCCGCTTTATTCGTGTCATGTGCGAATACG
AGGAAACGATGTACCGCCTGAAAGCCTACGGCGTGAAAAGCACCATTCTG
TTCTTCGGTTCTGCTCGGGCTAAAAGCAGGGAACAATACGATCACAGAAT
GGGGGAACTGGTGGAAGCgctggcgggggcggtgACGGAACAGGAGCAGA
AAGacgcggaggcggccatcgccaccttACGGAAGACCGAATGGCTCACC
GAGTATTTTGACAAAGTGACGGAACTCTCGAAGCGCCTGACAGACTGGTC
CTTGCAGTCGGAGCACAAGCTGGCCCAGGCACGCACGTACACGGGCGTGA
CCCGATACCACCTCAAAACTCGGGGGCCCGTCCCGCACCAGTCCTACTCC
ATCATCGACGAGGACGTCAAGGAGCATCCGGAGCAAAGTATTTATATCAC
CACGGGGGGCGGGCCAGGCTtcatggaggcggcgaacAAGGGCGCAAGCG
AGGTGCCAGGGGCGCTGACGAtcggGATGGGCATCACTCTCCCCTTCGAG
GACGGTCTCAACCCTTACGTGTCCGAGGAGCTGGCGTTTGAGTTCCATTA
CTTCTTCACTCGGAAGTTCTGGATGGTGTACCACTGTCAGGCTCTTGTGG
TCGCCCCCGGTGGTATGGGCACTCTTGATGAGCTATTTGAGGTCCTGACC
CTGAAACAAACGGGAAAGGTGCAGCCAGACATGCCGGTCGTCCTGTTCGG
GAAGGAGTTTTGGAAAAGCATCATCAGTTGGGACGCGCTGGCGGACTACG
GGGTCATTTCCCAGgtgcggaggggaggtgTGAAGGTTTTTGGGAAGCTA
GTTTGGAATCCTTGCGATGACGTGCGCGTGGGTGATTCATCCTGTTCGCT
TAGCGTTTCTAGCGTTCCCGTAAGATTTGGTTAGATGGCGTCACCGGCTC
CCGAGAAGAAATACACCATGGCTGTGAAGGCCTATAAGAACCCTGACTTT
CTCAATTCAGGTCATGCCCGCTTTATTCGTGTCATGTGCGAATACGAGGA
AACGATGTACCGCCTGAAAGCCTACGGCGTGAAAAGCACCATTCTGTTCT
TCGGTTCTGCTCGGGCTAAAAGCAGGGAACAATACGATCACAGAATGGGG
GAACTGGTGGAAGCgctggcgggggcggtgACGGAACAGGAGCAGAAAGa
cgcggaggcggccatcgccaccttACGGAAGACCGAATGGCTCACCGAGT
ATTTTGACAAAGTGACGGAACTCTCGAAGCGCCTGACAGACTGGTCCTTG
CAGTCGGAGCACAAGCTGGCCCAGGCACGCACGTACACGGGCGTGACCCG
ATACCACCTCAAAACTCGGGGGCCCGTCCCGCACCAGTCCTACTCCATCA
TCGACGAGGACGTCAAGGAGCATCCGGAGCAAAGTATTTATATCACCACG
GGGGGCGGGCCAGGCTtcatggaggcggcgaacAAGGGCGCAAGCGAGGT
GCCAGGGGCGCTGACGAtcggGATGGGCATCACTCTCCCCTTCGAGGACG
GTCTCAACCCTTACGTGTCCGAGGAGCTGGCGTTTGAGTTCCATTACTTC
TTCACTCGGAAGTTCTGGATGGTGTACCACTGTCAGGCTCTTGTGGTCGC
CCCCGGTGGTATGGGCACTCTTGATGAGCTATTTGAGGTCCTGACCCTGA
AACAAACGGGAAAGGTGCAGCCAGACATGCCGGTCGTCCTGTTCGGGAAG
GAGTTTTGGAAAAGCATCATCAGTTGGGACGCGCTGGCGGACTACGGGGT
CATTTCCCAGgtgcggaggggaggtgTGAAGGTTTTTGGGAAGCTAGTTT
GGAATCCTTGCGATGACGTGCGCGTGGGTGATTCATCCTGTTCGCTTAGC
GTTTCTAGCGTTCCCGTAAGATTTGGTTAG back to top
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