rna3078, rna3078 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3078
Unique Name	rna3078
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1392
Alignment location	CM002460.1:659497..661267 +

Link to JBrowse

Properties


Property Name	Value
Product	Inorganic phosphate transporter Pho88
Orig transcript id	gnl\|cribi\|Naga_100069g18.5325.mrna
Orig protein id	gnl\|cribi\|Naga_100069g18.5325
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:659497..661267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100069g18	gene2956	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3078	rna3078-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27606.1	cds3070	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:659497..661267+
coding sequence from alignment at CM002460.1:659497..661267+

mRNA sequence

>rna3078 ID=rna3078|Name=rna3078|organism=Nannochloropsis gaditana|type=mRNA|length=1392bp
CCATTTGAGTCCTTTTATGACTGCGTTCAATTGCCTGGCATCCTGATTGT
TTGTCACTCCTTAGGAGAGTGAGGTTCTGATGCTGCCATCATTTCTCTTC
AGCATTCGCTCACACTCAAACGACAACCGCAACAGTACATCCGGTGGTAA
ACTTGAAGCGTACTCTATCATGGCAGCAGCAGTGGCGGAAATGCAGCAGC
ATGCGACGATCGAGCAAACGTCTGGAGTAGGAGAGCACGAGGTGGTGGTG
AATTTTCGTCACATTACCGAGCTTGAGCATCACGGTGTGAATCGCACAGA
CCTTACAAAACTTATGGAAGCAGGGTATTGTACAGTCGAATCCATTACTC
ATGCAACACTTCGCAAGCTCACGGACATCAAAGGCATTTCTGACCAGAAA
GCTCAAAAAATTAAGGAAATAGCTTACAAGCTGGTTCCCATGGGTTTCTT
GACGGCCGCACAACAGCTGGAGACTCGCAAAGATCTGATACAATTGTCAA
CAGGATCGAAGGATCTTGACGCTCTCCTAGGCGGAGGAGTGGAGACAGGG
TCATTGACAGAAATTTTTGGCGAGTTTCGCACAGGAAAGACGCAGCTTTG
CCATACCCTTTGTGTGACGAGTCAGCTTCCCATGGACCAAGGCGGGGGAG
AAGGAAAAGCAATGTACATCGACACCGAGGGGACTTTTCGCCCACAGCGC
TTGGTGGCCATTGCGGAGCGATTTGGATTAGATGTAGATACCGTCTTGGA
CAACGTGGCTTTCGCTCGCGCCCACAATTCAGAGCAGCAAATGGATCTTT
TGAAAATGGCGTCGGCGATGATGTCAGAAGATCGCTACGCTCTGGTTGTG
GTGGACTCGGCTACGGCTCTGTTTCGCACGGACTACTGCGGGCGAGGGGA
GCTATCAGAGCGGCAAATGCAGCTGGCGCAATTTTTGCGACAGTTGACAA
GAATGTCCGAGGAGTTTGGCGTTGCAGTCGTGCTGACAAACCAGGTGGTG
GCAAATCCTGATGGCATGAGCTTTGCAAAAGACCAAACAAAGCCAATCGG
AGGTAACATTATCGCTCACGCGTCACATACACGCCTGCGCTTAAGAAAAG
GCAGGGGAGAAAATCGAATTTGTCAGATTTACGATTCGCCAACCTTACCG
GAAGCTGAGACTCAATTCTCTATCGGGGCATCGGGTATCGAGGATGCAAA
GGACTAGGAGACAGGGACAGAGAGGAAATGATAGCTTGAGCTTGAAACGA
AAGAATCAAGGACGGTTCTTGAGCAGGCACAGTGAGGTTTGTACAGGAGC
CAATCGACCATGAAGTGAAGTATGTTTCTGGAGGGTCTGGAATAAATTAA
TAGAGAATCATCTTTGAAGGCCCGAGGCCTCTCTTTGCTCGG

protein sequence of rna3078

>rna3078-protein ID=rna3078-protein|Name=rna3078|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MGTFRGESALAAGCSKTQEGRSTTKTSRPTHPHKISKIMLLLLILAAMTL
TATHARSATEVGGSGATPSSPTTSGRKRALLSSKKNEPQDDEAKPTPTRK
SKMSRMAGSPSARRKRAPRGKQDFATLSSSRSSTASLEEDPDVIPFLAST
RFKRGEALTSQGGGGLLFTLARRAGKALVGSSAFRFVAEEKIFETVAGML
AYRIAFQWSKDSTATRKARLLFTLYVCLYLGALLYSRQQAIAQQDARTLK
VAAVPAVLSSLLDMAKKMKKGESPGGLPGLAGLARPQEKEMTFRDYDLGQ
IKAALDRFSLFLVGMTFLHFKMKNTYMIMYWG

mRNA from alignment at CM002460.1:659497..661267+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3078 ID=rna3078|Name=rna3078|organism=Nannochloropsis gaditana|type=mRNA|length=1771bp|location=Sequence derived from alignment at CM002460.1:659497..661267+ (Nannochloropsis gaditana)
AGGTTAGCCCTATAGCCGGATATGGGTACATTTAGAGGCGAAAGCGCCTT
AGCCGCAGGATGCAGCAAGACGCAGGAGGGCAGAAGCACGACAAAGACCT
CGCGTCCCACCCATCCCCACAAAATTTCCAAAAtcatgcttcttcttctg
atACTCGCAGCTATGACATTGACCGCGACACATGCAAGGTCGGCGAcaga
ggtgggagggagtggcGCGACACCCTCGAGCCCAACCACCTCTGGGAGGA
AACGTGCGTTGCTCAGCAGTAAGGTAAAAGGAATGGTCCCAGCTTTCTTT
TATGATGCTTGGGCGCATATGATTACTTCACATATTGATGTTTAAATTAG
AATTGCTCACAGGAAGGGAGCATTGTATCTTTTTTTGGTCGTACACGTGC
GTAGTGGAGCAATAGATGACACGAATGTGGTCAAGAGGTTGAATTTAGGA
AATCAAATCAAAACGGGTTGTAAGAATTCTGGCGTGCTTATGCCGAGACG
TGCACACAATTATCATTCATGAAATAGAAGAACGAACCCCAAGACGATGA
AGCGAAGCCCACCCCCACCCGCAAGTCCAAAATGAGCCGCATGGCAGGGT
CCCCGTcggcgcggaggaagcgagcgcCGAGAGGCAAACAGGACTTTGcc
acgctttcttcctctaggtcctccaccgcgaGTTTAGAGGAAGACCCGGA
CGTGATCCCTTTCCTGGCCAGCACGCGCTTCAAGCGAGGGGAGGCGTTGA
CGTCgcagggaggcggtggtcTCCTCTTCACTCTGGCGAGACGCGCCGGA
AAGGCCTTAGTCGGGTCCTCTGCCTTCCGTttcgtggcggaggagaagat
ctTTGAGACTGTCGCAGGCATGCTCGCCTACCGCATTGCCTTTCAATGGA
GCAAGGACTCGACGGCCACGCGGAAAGCCCGCTTGCTCTTCACCCTCTAT
GTCTGCCTGTATCTGGGCGCGCTCCTGTACTCGCGGCAGCAGGCCATCGC
ACAGCAAGACGCGCGCACGCTCAAGGTAGCCGCGGTGCCCGCcgttcttt
cctccctcctggatatggcgaagaagatgaagaaaggggagagcccGGGG
GGATTGCCGGGGCTGGCGGGCCTGGCGAGGccgcaggagaaggagatgac
cTTCCGCGACTACGACTTGGGCCAGATCAAGGCAGCCTTGGACCGATTCT
CGCTCTTCTTGGTGGGGATGACCTTCCTGCACTTCAAGATGAAGAACACG
TACATGATCATGTACTGGGGGTAGGtggcggcctccctcctcctcgtcct
ctctctccccatcGCTGGCTCTCTCTGTGCCCCTTTGCCCCGCCCatgtc
tttccccctcctttctgctcATTACcacatgcccccctccccctccgggt
CTTGGTTGTCAACACcctgccgcccccccttcctcccccccgccctccag
ctTGCTCGGGCCCCTCATGCTGGTCCGGGAGCCGCTGTTTCAAGTGCATG
TCTTCGGGATGGGGGAGACGGGCATCAGAGAGAGACCCTTCGGGcccaag
gaggagccggaggcggtggaggagggcgagggggaggaaggaggggagga
aggggcggaggccgcgaaggaggcgaggagggaagatgatGTCGGTGCAA
GGGGGCTGGAAGAGGCACAGGAGAaggttgagggggaggaagaggtggag
ggggagggagaggtggaggaggaggaaggggaagaagagggcgagggaga
cgaagtggaggggggagagga

Coding sequence (CDS) from alignment at CM002460.1:659497..661267+

>rna3078 ID=rna3078|Name=rna3078|organism=Nannochloropsis gaditana|type=CDS|length=1998bp|location=Sequence derived from alignment at CM002460.1:659497..661267+ (Nannochloropsis gaditana)
ATGGGTACATTTAGAGGCGAAAGCGCCTTAGCCGCAGGATGCAGCAAGAC
GCAGGAGGGCAGAAGCACGACAAAGACCTCGCGTCCCACCCATCCCCACA
AAATTTCCAAAAtcatgcttcttcttctgatACTCGCAGCTATGACATTG
ACCGCGACACATGCAAGGTCGGCGAcagaggtgggagggagtggcGCGAC
ACCCTCGAGCCCAACCACCTCTGGGAGGAAACGTGCGTTGCTCAGCAGTA
AGAAGAACGAACCCCAAGACGATGAAGCGAAGCCCACCCCCACCCGCAAG
TCCAAAATGAGCCGCATGGCAGGGTCCCCGTcggcgcggaggaagcgagc
gcCGAGAGGCAAACAGGACTTTGccacgctttcttcctctaggtcctcca
ccgcgaGTTTAGAGGAAGACCCGGACGTGATCCCTTTCCTGGCCAGCACG
CGCTTCAAGCGAGGGGAGGCGTTGACGTCgcagggaggcggtggtcTCCT
CTTCACTCTGGCGAGACGCGCCGGAAAGGCCTTAGTCGGGTCCTCTGCCT
TCCGTttcgtggcggaggagaagatctTTGAGACTGTCGCAGGCATGCTC
GCCTACCGCATTGCCTTTCAATGGAGCAAGGACTCGACGGCCACGCGGAA
AGCCCGCTTGCTCTTCACCCTCTATGTCTGCCTGTATCTGGGCGCGCTCC
TGTACTCGCGGCAGCAGGCCATCGCACAGCAAGACGCGCGCACGCTCAAG
GTAGCCGCGGTGCCCGCcgttctttcctccctcctggatatggcgaagaa
gatgaagaaaggggagagcccGGGGGGATTGCCGGGGCTGGCGGGCCTGG
CGAGGccgcaggagaaggagatgaccTTCCGCGACTACGACTTGGGCCAG
ATCAAGGCAGCCTTGGACCGATTCTCGCTCTTCTTGGTGGGGATGACCTT
CCTGCACTTCAAGATGAAGAACACGTACATGATCATGTACTGGGGGTAGA
TGGGTACATTTAGAGGCGAAAGCGCCTTAGCCGCAGGATGCAGCAAGACG
CAGGAGGGCAGAAGCACGACAAAGACCTCGCGTCCCACCCATCCCCACAA
AATTTCCAAAAtcatgcttcttcttctgatACTCGCAGCTATGACATTGA
CCGCGACACATGCAAGGTCGGCGAcagaggtgggagggagtggcGCGACA
CCCTCGAGCCCAACCACCTCTGGGAGGAAACGTGCGTTGCTCAGCAGTAA
GAAGAACGAACCCCAAGACGATGAAGCGAAGCCCACCCCCACCCGCAAGT
CCAAAATGAGCCGCATGGCAGGGTCCCCGTcggcgcggaggaagcgagcg
cCGAGAGGCAAACAGGACTTTGccacgctttcttcctctaggtcctccac
cgcgaGTTTAGAGGAAGACCCGGACGTGATCCCTTTCCTGGCCAGCACGC
GCTTCAAGCGAGGGGAGGCGTTGACGTCgcagggaggcggtggtcTCCTC
TTCACTCTGGCGAGACGCGCCGGAAAGGCCTTAGTCGGGTCCTCTGCCTT
CCGTttcgtggcggaggagaagatctTTGAGACTGTCGCAGGCATGCTCG
CCTACCGCATTGCCTTTCAATGGAGCAAGGACTCGACGGCCACGCGGAAA
GCCCGCTTGCTCTTCACCCTCTATGTCTGCCTGTATCTGGGCGCGCTCCT
GTACTCGCGGCAGCAGGCCATCGCACAGCAAGACGCGCGCACGCTCAAGG
TAGCCGCGGTGCCCGCcgttctttcctccctcctggatatggcgaagaag
atgaagaaaggggagagcccGGGGGGATTGCCGGGGCTGGCGGGCCTGGC
GAGGccgcaggagaaggagatgaccTTCCGCGACTACGACTTGGGCCAGA
TCAAGGCAGCCTTGGACCGATTCTCGCTCTTCTTGGTGGGGATGACCTTC
CTGCACTTCAAGATGAAGAACACGTACATGATCATGTACTGGGGGTAG

Synonyms

Publications