EWM27606.1, cds3070 (CDS) Nannochloropsis gaditana

Overview
NameEWM27606.1
Unique Namecds3070
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:659518..659769 +
Alignment locationCM002460.1:660024..660770 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27606.1
ProductInorganic phosphate transporter Pho88
Orig transcript idgnl|cribi|Naga_100069g18.5325.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:659518..659769 +
CM002460.1supercontigCM002460.1:660024..660770 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR019263Phosphate_transporter_Pho88
Homology
[Close]
BLAST of EWM27606.1 vs. NCBI_GenBank
Match: gi|585109874|gb|EWM27606.1| (Inorganic phosphate transporter Pho88 [Nannochloropsis gaditana])

HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0 
Query:    1 MGTFRGESALAAGCSKTQEGRSTTKTSRPTHPHKISKIMLLLLILAAMTLTATHARSATEVGGSGATPSSPTTSGRKRALLSSKKNEPQDDEAKPTPTRKSKMSRMAGSPSARRKRAPRGKQDFATLSSSRSSTASLEEDPDVIPFLASTRFKRGEALTSQGGGGLLFTLARRAGKALVGSSAFRFVAEEKIFETVAGMLAYRIAFQWSKDSTATRKARLLFTLYVCLYLGALLYSRQQAIAQQDARTLKVAAVPAVLSSLLDMAKKMKKGESPGGLPGLAGLARPQEKEMTFRDYDLGQIKAALDRFSLFLVGMTFLHFKMKNTYMIMYWG 332
            MGTFRGESALAAGCSKTQEGRSTTKTSRPTHPHKISKIMLLLLILAAMTLTATHARSATEVGGSGATPSSPTTSGRKRALLSSKKNEPQDDEAKPTPTRKSKMSRMAGSPSARRKRAPRGKQDFATLSSSRSSTASLEEDPDVIPFLASTRFKRGEALTSQGGGGLLFTLARRAGKALVGSSAFRFVAEEKIFETVAGMLAYRIAFQWSKDSTATRKARLLFTLYVCLYLGALLYSRQQAIAQQDARTLKVAAVPAVLSSLLDMAKKMKKGESPGGLPGLAGLARPQEKEMTFRDYDLGQIKAALDRFSLFLVGMTFLHFKMKNTYMIMYWG
Sbjct:    1 MGTFRGESALAAGCSKTQEGRSTTKTSRPTHPHKISKIMLLLLILAAMTLTATHARSATEVGGSGATPSSPTTSGRKRALLSSKKNEPQDDEAKPTPTRKSKMSRMAGSPSARRKRAPRGKQDFATLSSSRSSTASLEEDPDVIPFLASTRFKRGEALTSQGGGGLLFTLARRAGKALVGSSAFRFVAEEKIFETVAGMLAYRIAFQWSKDSTATRKARLLFTLYVCLYLGALLYSRQQAIAQQDARTLKVAAVPAVLSSLLDMAKKMKKGESPGGLPGLAGLARPQEKEMTFRDYDLGQIKAALDRFSLFLVGMTFLHFKMKNTYMIMYWG 332
[Close]
BLAST of EWM27606.1 vs. NCBI_GenBank
Match: gi|553181707|ref|XP_005853612.1| (hypothetical protein NGA_0424800 [Nannochloropsis gaditana CCMP526] >gi|422295452|gb|EKU22751.1| hypothetical protein NGA_0424800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 483.797 bits (1244), Expect = 5.433e-170
Identity = 254/277 (91.70%), Postives = 257/277 (92.78%), Query Frame = 0 
Query:   56 RSATEVGGSGATPSSPTTSGRKRALLSSKKNEPQDDEAKPTPTRKSKMSRMAGSPSARRKRAPRGKQDFATLSSSRSSTASLEEDPDVIPFLASTRFKRGEALTSQGGGGLLFTLARRAGKALVGSSAFRFVAEEKIFETVAGMLAYRIAFQWSKDSTATRKARLLFTLYVCLYLGALLYSRQQAIAQQDARTLKVAAVPAVLSSLLDMAKKMKKGESPGGLPGLAGLARPQEKEMTFRDYDLGQIKAALDRFSLFLVGMTFLHFKMKNTYMIMYWG 332
            R   +VG  G      T         +SKKNEPQDDEAKPTPTRKSKMSRMAGSPSARRKRAPRGKQDFATLSSSRSSTASLE+DPDVIPFLASTRFKRGEALTSQGGGGLLFTLARRAGKALVGSSAFRFVAEEKIFETVAGMLAYRIAFQWSKDSTATRKARLLFTLYVCLYLGALLYSRQQAIAQQDARTLKVAAVPAVLSSLLDMAKKMKKGESPGGLPGLAGLARPQEKEMTFRDYDLGQIKAALDRFSLFLVGMTFLHFKMKNTYMIMYWG
Sbjct:   39 RDTCKVGDRGGREWRDTLEPNHLWEETSKKNEPQDDEAKPTPTRKSKMSRMAGSPSARRKRAPRGKQDFATLSSSRSSTASLEDDPDVIPFLASTRFKRGEALTSQGGGGLLFTLARRAGKALVGSSAFRFVAEEKIFETVAGMLAYRIAFQWSKDSTATRKARLLFTLYVCLYLGALLYSRQQAIAQQDARTLKVAAVPAVLSSLLDMAKKMKKGESPGGLPGLAGLARPQEKEMTFRDYDLGQIKAALDRFSLFLVGMTFLHFKMKNTYMIMYWG 315
The following BLAST results are available for this feature:
BLAST of EWM27606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109874|gb|EWM27606.1|0.000e+0100.00Inorganic phosphate transporter Pho88 [Nannochloro... [more]
gi|553181707|ref|XP_005853612.1|5.433e-17091.70hypothetical protein NGA_0424800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3078rna3078Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications