rna3051, rna3051 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3051
Unique Name	rna3051
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1593
Alignment location	CM002460.1:570980..573172 -

Link to JBrowse

Properties


Property Name	Value
Product	dna topoisomerase i
Orig transcript id	gnl\|cribi\|Naga_100059g30.8046.mrna
Orig protein id	gnl\|cribi\|Naga_100059g30.8046
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:570980..573172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g30	gene2929	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27641.1	cds3043	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3051	rna3051-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:570980..573172-
coding sequence from alignment at CM002460.1:570980..573172-

mRNA sequence

>rna3051 ID=rna3051|Name=rna3051|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp
ATGCAATTGTGTCTCCGCAGAGAGAGCGCTGTGAGAAAGCAGGCTGCACC
TTGGCGAAGCGTGTACAAAGACAGCAAGAACATCCCGCTCCACATCCACC
ACGATACCATGCAGCGGCTCGTGCTTGCTTTTCGGCGTGGTACCATGCTT
TCTACGAATACTCGAACGTCGATGTCAGGCGCTCGGCGGGGTTTGGCTTC
TGCCGTTTCTGACAAAGACGGCGTCGAGAACGCTCCTACGACTTTTTCTC
ATGAGAAGATGGCCCGCGATAAACGCTACAAGCCTCAAAATGAGGTACCG
CGTCAAGTTTTGGAGTCGATGCTTGCCAAAGAGGTACATTCACCTGGCTT
TTCGATCAAAGGAGAAGCACGGGAGGGTCGAGCAGCTTACCTGGATTTTC
AGGCAACAACTCCCATGGACCCCCGCGTTGTAGACGAAATGCTTCCTTAT
ATGACAGGCAGCTTTGGAAATCCGCATTCTCGAACACACACCTACGGATG
GGAGGCGGAAGCAGCGGTGGAAAAGGCTCGAGAGCAGGTAGCATCGATTT
TGGGTGCCTCCGCTAAAGAAATCGTCTTTACATCGGGTGCCACCGAGAGC
AACAATGCAGCGATCAAGGGCGTGGCACATTTCTACGGCGAGAAGAAGAA
GCACATTATCACGACACAGATTGAGCACAAATGTGTCCTCGACTCGTGCC
GTGTGCTGGAACAGGAAGGGTACCAAGTCACGTACCTGCCCGTGCAGAAA
AACGGGCTCTTGGACCTGCAAGTCCTGAAAGATGCCATCACGCCCCAGAC
CTCCCTGGTGTCTGTCATGGCTGTGAACAACGAGATTGGTGTCTTGCAGC
CCATGCGTGAGATCGGCCAAATGTGCCGGGAACGCAAGGTGTTCTTCCAC
TCGGACCTGGCGCAAATGGTGGGCAAGATGCCGATCGACGTGGACGAGAT
GAAGATCGACCTGGCCTCCCTCTCTAGCCACAAGGTCTACGGGCCGAAGG
GAGTGGGCGCCCTCTACGTACGACGCCGGCCCCGGGTGCGCCTGGAGCCC
ATCATGTCGGGGGGAGGGCAGGAGCGAGGCCTGCGGAGCGGGACGCTGCC
GCATTTCCTGTGCGTGGGTTTCGGTGCCGCGTGCGACATCGCGAAGAAGG
AGCTCCCACACGACGAGGCCTGGGTCCACTTCCTGGCCACGCGCTTGTAC
GACGGGATTCGGAAGAACATTCCTCACGTGGTGTTGAACGGGGACCTGGA
TTCCCGATACGAGGGGTGCTTGAATGTTTCGTTCGCCTACGTGGAGGGGG
AGTCCTTGTTGATGGCTTTGAAGAACATTGCCGTCTCGAGCGGATCTGCC
TGCACTTCGGCATCCCTGGAGCCCTCGTACGTTCTCCGGGCCATAGGGGT
AGGGGAAGACCTGGCGCACACGTCGATTCGGTTCGGCATCGGCCGTTTTA
CCACCGTTGAGGAGGTTGATTTCACCATTGACTTGCTGTCCCGAAACGTT
GCCCGTTTGCGAGAGATGAGCCCATTGTGGGAATTGGTGCAAGAGGGAGT
AGATTTGAACACTATTCAATGGACGCAAGATGCCCATCATTGA

protein sequence of rna3051

>rna3051-protein ID=rna3051-protein|Name=rna3051|organism=Nannochloropsis gaditana|type=polypeptide|length=730bp
MSESEEEEESEEDGRVTKKKVSAKKKTKGAVPKKTTTKAAPKTKRKPALK
SKKPTVKKEAKGELPKTALSSKAVRIEQAMKAFKWWDQEPLPQGIQWRAL
EHNGIFFPPDYVPHGVKMLYDGKEVELPSDLEEVATFFASMPPDGPQLGH
PDTRKIFVKNFFGQFKEMLKDKLEDDLGIKDFDKCDFSPIRAHLETQKMI
KKAATVEEKALVKAGKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRG
MHPLMGMIKERCLPENIIVNLGPDARVPPCPLPGHAWDRVQHDNKVTWLA
SWKENVLNGVKYVMLAASSSFKGKSDMEKYDKAARLKQCIGRIRRDYEGN
LGKKADREAKQIATAMWIIDKLALRVGGEKGEDEADTVGCCSLRLEHLRF
PPPLEDGGESSGAKQYEIELEFLGKDSMLFKQTIDFASYGENGKQVFKNL
RHFVKDKKPEQDVFEMLTPSVLNAHLGSLMPGLSAKVFRTYNASETLQNE
LPTVEDLAGMSVGDKVVAYNDANRKVAILCNHQRTVTKTMETALGNLQER
LQLLKDQKKELLGQKELLKSGKTNKIRTRKDDVLTDKAVKAMDKAEDLRK
KAATPEEKIKASHALDEAKELKRQAQAAKAKDAHLFARPPTKEQVDRKIE
QWREKITKLELDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIER
IFAKTLRDKFVWAMGVPPSWRFEGTSKPEM

mRNA from alignment at CM002460.1:570980..573172-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3051 ID=rna3051|Name=rna3051|organism=Nannochloropsis gaditana|type=mRNA|length=2193bp|location=Sequence derived from alignment at CM002460.1:570980..573172- (Nannochloropsis gaditana)
ATGTCGGAAAGTGAAGAGGAAGAAGAAAGTGAAGAAGATGGGCGGGTCAC
CAAGAAAAAAGTTTCCGCAAAGAAGAAGACGAAAGGGGCCGTGCCCAAAA
AGACAACGACCAAGGCTGCGCCGAAGACCAAGCGAAAGCCGGCACTGAAA
AGCAAAAAGCCGACAGTGAAGAAGGAGGCGAAGGGGGAACTGCCCAAGAC
TGCTCTCTCCAGCAAGGCAGTTCGTATCGAGCAGGCCATGAAGGCTTTTA
AATGGTGGGACCAGGAGCCTTTGCCGCAGGGAATCCAGTGGCGAGCGCTC
GAGCACAACGGGATCTTCTTCCCCCCCGACTATGTACCGCACGGGGTCAA
GATGTTGTACGATGGAAAAGAAGTCGAGCTCCCGTCCGACTTGGAGGAAG
TGGCCACATTTTTTGCCTCCATGCCCCCCGATGGGCCCCAGCTAGGTCAC
CCGGACACGAGGAAGATTTTTGTCAAGAATTTCTTCGGGCAATTCAAAGA
GATGCTGAAAGACAAGCTGGAAGATGATCTGGGGATAAAGGATTTTGACA
AGTGTGACTTTTCCCCAATCCGTGCACATCTGGAAACGCAAAAAATGATC
AAGAAGGCGGCGACGGTGGAGGAGAAGGCCCTGGTCAAGGCAGGGAAGGA
GGAGCGGCAGGACCATTACGGGTATGCCATCGTCGACGGGCGGATCGAGA
AGGTAGGAAATTTCAACATGGAGCCGCCCGGGTTGTTCAGGGGACGGGGC
ATGCATCCCTTGATGGGCATGATCAAGGAGCGGTGTTTGCCGGAAAACAT
CATCGTGAATCTCGGGCCGGACGCGCGGGTGCCTCCCTGTCCTTTGCCCG
GGCACGCCTGGGACCGAGTGCAGCACGACAACAAAGTGACCTGGCTGGCA
AGCTGGAAGGAAAACGTCCTGAATGGGGTCAAGTACGTGATGCTTGCGGC
GTCCTCCTCCTTCAAGGGGAAGTCGGACATGGAGAAATACGACAAAGCGG
CGCGGCTCAAGCAATGCATCGGTCGGATCCGGAGGGATTATGAGGGGAAC
CTGGGCAAGAAGGCGGACAGGGAGGCAAAGCAAATTGCGACGGCTATGTG
GATCATTGACAAACTGGCTCTCCGTGTCGGGGGTGAGAAGGGTGAGGACG
AGGCGGATACCGTGGGGTGCTGCTCGTTGCGACTCGAACACCTCCGTTTT
CCACCTCCCTTAGAGGACGGGGGGGAATCATCAGGGGCAAAGCAGTATGA
GATCGAGCTGGAGTTCTTGGGGAAAGACTCCATGTTGTTCAAGCAGACCA
TCGACTTTGCCTCCTACGGCGAGAACGGGAAGCAGGTGTTCAAGAACCTC
AGACACTTTGTCAAGGACAAGAAGCCCGAGCAAGACGTCTTCGAGATGCT
CACGCCCTCCGTTCTGAACGCCCACCTGGGCTCGCTCATGCCTGGGCTCT
CCGCCAAGGTTTTCCGTACCTACAATGCCTCCGAGACGCTGCAAAACGAG
CTGCCTACAGTGGAAGATCTGGCGGGAATGAGCGTGGGGGACAAGGTGGT
GGCCTACAACGACGCGAATCGCAAGGTAGCCATTCTCTGCAATCACCAGC
GCACTGTCACCAAGACCATGGAGACGGCCCTAGGGAACTTACAGGAGCGT
TTGCAGCTTCTGAAGGATCAGAAAAAGGAATTGCTTGGGCAGAAGGAGCT
CTTGAAATCGGGCAAAACGAATAAGATTCGGACGCGAAAGGACGACGTGT
TAACGGACAAGGCAGTCAAGGCAATGGACAAGGCCGAAGACCTACGGAAA
AAGGCGGCGACTCCCGAGGAGAAGATTAAAGCAAGTCATGCTCTTGACGA
AGCAAAGGAGCTGAAGCGACAGGCTCAGGCTGCCAAGGCCAAAGATGCGC
ATTTGTTTGCGCGTCCGCCGACGAAAGAGCAAGTGGATCGTAAAATTGAA
CAGTGGAGGGAGAAGATTACTAAGCTAGAGCTCGACATTCGTAACAAAGA
TGAGAACAAGGAGGTAGCTCTGGGAACGTCAAAGATCAACTACATGGATC
CACGTATCTCTGTGGCCTGGTGCAAGCGAGTAGAGGTGCCAATTGAGCGC
ATTTTTGCAAAAACCTTGCGGGACAAATTTGTGTGGGCTATGGGGGTGCC
GCCGTCGTGGCGATTCGAAGGGACGAGCAAGCCGGAAATGTAA

Coding sequence (CDS) from alignment at CM002460.1:570980..573172-

>rna3051 ID=rna3051|Name=rna3051|organism=Nannochloropsis gaditana|type=CDS|length=2193bp|location=Sequence derived from alignment at CM002460.1:570980..573172- (Nannochloropsis gaditana)
ATGTCGGAAAGTGAAGAGGAAGAAGAAAGTGAAGAAGATGGGCGGGTCAC
CAAGAAAAAAGTTTCCGCAAAGAAGAAGACGAAAGGGGCCGTGCCCAAAA
AGACAACGACCAAGGCTGCGCCGAAGACCAAGCGAAAGCCGGCACTGAAA
AGCAAAAAGCCGACAGTGAAGAAGGAGGCGAAGGGGGAACTGCCCAAGAC
TGCTCTCTCCAGCAAGGCAGTTCGTATCGAGCAGGCCATGAAGGCTTTTA
AATGGTGGGACCAGGAGCCTTTGCCGCAGGGAATCCAGTGGCGAGCGCTC
GAGCACAACGGGATCTTCTTCCCCCCCGACTATGTACCGCACGGGGTCAA
GATGTTGTACGATGGAAAAGAAGTCGAGCTCCCGTCCGACTTGGAGGAAG
TGGCCACATTTTTTGCCTCCATGCCCCCCGATGGGCCCCAGCTAGGTCAC
CCGGACACGAGGAAGATTTTTGTCAAGAATTTCTTCGGGCAATTCAAAGA
GATGCTGAAAGACAAGCTGGAAGATGATCTGGGGATAAAGGATTTTGACA
AGTGTGACTTTTCCCCAATCCGTGCACATCTGGAAACGCAAAAAATGATC
AAGAAGGCGGCGACGGTGGAGGAGAAGGCCCTGGTCAAGGCAGGGAAGGA
GGAGCGGCAGGACCATTACGGGTATGCCATCGTCGACGGGCGGATCGAGA
AGGTAGGAAATTTCAACATGGAGCCGCCCGGGTTGTTCAGGGGACGGGGC
ATGCATCCCTTGATGGGCATGATCAAGGAGCGGTGTTTGCCGGAAAACAT
CATCGTGAATCTCGGGCCGGACGCGCGGGTGCCTCCCTGTCCTTTGCCCG
GGCACGCCTGGGACCGAGTGCAGCACGACAACAAAGTGACCTGGCTGGCA
AGCTGGAAGGAAAACGTCCTGAATGGGGTCAAGTACGTGATGCTTGCGGC
GTCCTCCTCCTTCAAGGGGAAGTCGGACATGGAGAAATACGACAAAGCGG
CGCGGCTCAAGCAATGCATCGGTCGGATCCGGAGGGATTATGAGGGGAAC
CTGGGCAAGAAGGCGGACAGGGAGGCAAAGCAAATTGCGACGGCTATGTG
GATCATTGACAAACTGGCTCTCCGTGTCGGGGGTGAGAAGGGTGAGGACG
AGGCGGATACCGTGGGGTGCTGCTCGTTGCGACTCGAACACCTCCGTTTT
CCACCTCCCTTAGAGGACGGGGGGGAATCATCAGGGGCAAAGCAGTATGA
GATCGAGCTGGAGTTCTTGGGGAAAGACTCCATGTTGTTCAAGCAGACCA
TCGACTTTGCCTCCTACGGCGAGAACGGGAAGCAGGTGTTCAAGAACCTC
AGACACTTTGTCAAGGACAAGAAGCCCGAGCAAGACGTCTTCGAGATGCT
CACGCCCTCCGTTCTGAACGCCCACCTGGGCTCGCTCATGCCTGGGCTCT
CCGCCAAGGTTTTCCGTACCTACAATGCCTCCGAGACGCTGCAAAACGAG
CTGCCTACAGTGGAAGATCTGGCGGGAATGAGCGTGGGGGACAAGGTGGT
GGCCTACAACGACGCGAATCGCAAGGTAGCCATTCTCTGCAATCACCAGC
GCACTGTCACCAAGACCATGGAGACGGCCCTAGGGAACTTACAGGAGCGT
TTGCAGCTTCTGAAGGATCAGAAAAAGGAATTGCTTGGGCAGAAGGAGCT
CTTGAAATCGGGCAAAACGAATAAGATTCGGACGCGAAAGGACGACGTGT
TAACGGACAAGGCAGTCAAGGCAATGGACAAGGCCGAAGACCTACGGAAA
AAGGCGGCGACTCCCGAGGAGAAGATTAAAGCAAGTCATGCTCTTGACGA
AGCAAAGGAGCTGAAGCGACAGGCTCAGGCTGCCAAGGCCAAAGATGCGC
ATTTGTTTGCGCGTCCGCCGACGAAAGAGCAAGTGGATCGTAAAATTGAA
CAGTGGAGGGAGAAGATTACTAAGCTAGAGCTCGACATTCGTAACAAAGA
TGAGAACAAGGAGGTAGCTCTGGGAACGTCAAAGATCAACTACATGGATC
CACGTATCTCTGTGGCCTGGTGCAAGCGAGTAGAGGTGCCAATTGAGCGC
ATTTTTGCAAAAACCTTGCGGGACAAATTTGTGTGGGCTATGGGGGTGCC
GCCGTCGTGGCGATTCGAAGGGACGAGCAAGCCGGAAATGTAA

Synonyms

Publications