rna2877, rna2877 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2877
Unique Name	rna2877
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1524
Alignment location	CM002460.1:135071..137663 +

Link to JBrowse

Properties


Property Name	Value
Product	uv excision repair protein rad23
Orig transcript id	gnl\|cribi\|Naga_100149g7.2648.mrna
Orig protein id	gnl\|cribi\|Naga_100149g7.2648
Gene	Rad23
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:135071..137663 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Rad23	gene2754	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2877	rna2877-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27799.1	cds2869	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:135071..137663+
coding sequence from alignment at CM002460.1:135071..137663+

mRNA sequence

>rna2877 ID=rna2877|Name=rna2877|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
CCCAACCCGTAGCTAGCAAGAACACCAGGTCAAAAGGAGGGAATCACAGA
CAACATCCAGACTATGTCATGTTCTGTCGTTGTACATCTGTGGCACATCA
CATAAGTGGGTTTTATCCTCAAACAAGCGGCTACCTGGGAGTTGAAAAGC
GTGGTGTTGATTACGAGCTCGTTGTCCCTGTCAACGAACAAGAAGCCAAG
AGCAGACAGCGTGCATAAAAAAATGGAAATTTTCCGAAGCAAGAAAATGG
GGGATGCCGACCAAATGTGCTCCTACCATGGCGAATGTGATGTATTCCAT
TGTCATGAGCTCATATGCGCCACATGTTGAGGCGAGTGAATATCATTTTC
GCGTCGAGCTACTCGTAGACGGTCTGACACTCCCTCCCGTCGTCTGTATT
GCAACGTGAAGTCCTGTATCACCGCTTTCTCTCCTCCCGTATGTGCTTGC
CCCACATGTAACTATAACTTCATGACAATATGGATGTTTGTAATGACCAC
TGGGCTGCGGGAGCATAGCACATACGGGGCAACTCCCGTGGTGGTACGGG
AGGTTGTTGACATTGCGGCGTTGCTGAACGTTTGTTTGTGTCAATTCTGG
CCGCATGTCTTGGAGAAGGAAAGTGCATTTGTTGGAAATTACATGGAAAT
TTGGACAGACAGTGGGCTTTTGGTGTGTTTTTCTGTCTTTCGCATCTTTA
TTTCTGTAGTCAAGGCTGCATAAGGCGGTAATAAACAAGCCCTCACCTCT
GATACCAGCTATGTAACCCGATCGCTCCATGCATCGACAGACTGACATTG
TATTCATATAGGCCAAAATCTTCGAACAGTCCTCTTCGATTGTTTTTCCT
TCCACCTGCAGCATTTGTTCACACGTGGCATTGGCTACCATTCTTTCGAC
AGGCTACGGACGCAGTGTATGCCTGCTTCTTCGACCACGCCTGCGACGTC
ACGTCTCACCGCTCTAGCTGCTCATCTCTCCTCTGTTTCTGTCACCAGCA
ACCCTAAAATGAGCCCAAAACGCAGTCCAATTACTTCCCATGTGCTTGAC
ACCACACTGGGAAAGCCAGCGCAGGGAATGCCTCTTCGTCTGGAGCAGCA
AGGAGAGCATGGCATAGGTAATGGAAATGCTACATGGACCTTGCTTGGCG
AAGGGCTGACGAATGCAGATGGAAGGGTCGAAGATTTGCTACCATCTTCC
CACACTTTGTCACCGGGCATCTATAAAATCACATTTGACGTGGCGGTTTA
CTTTCGCGCCATCAACACCAAGAGTTTCTACCCAAGTGTAACAATCGAAT
TTGAAGTGGAACGTCCCGAGGAACATTACCATGTGCCGTTGTTGATTAAT
CCTTTTGCTTACTCCACCTACAGAGGAAGTTGATGCGATGAACAGGGACA
GGGGGTAGTAGAGGGTGCTGCAGAGAGGTTGATAAGACAGTGTGGTGAAG
CGTATTAGGGAGCCATGTCTGTATTATAGCATAAAAATCATGACAAAGAC
ATCATTTGGCACCTCTTAATCGAA

protein sequence of rna2877

>rna2877-protein ID=rna2877-protein|Name=rna2877|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MSCIRMFFYFTFKTDGRRRPYNSLTRRMVSIKLKTIQGREFSVDGVELSQ
TINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDL
VIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQ
VTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEE
EAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVR
IINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARL
MEMGFGREQVVEAYILSGKEENAAVNLLLGG

mRNA from alignment at CM002460.1:135071..137663+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2877 ID=rna2877|Name=rna2877|organism=Nannochloropsis gaditana|type=mRNA|length=2593bp|location=Sequence derived from alignment at CM002460.1:135071..137663+ (Nannochloropsis gaditana)
ggaggagagaaagcggTGATACAGGACTTCACGTTGCAATAcagacgacg
ggagggagtgtCAGACCGTCTACGAGTAGCTCGACGCGAAAATGATATTC
ACTCGCCTCAACATGTGGCGCATATGAGCTCATGACAATGGAATACATCA
CATTCGCCATGGTAGGAGCACATTTGGTCGGCATCCCCCATTTTCTTGCT
TCGGAAAATTTCCATTTTTTTATGCACGCTGTCTGCTCTTGGCTTCTTGT
TCGTTGACAGGGACAACGAGCTCGTAATCAACACCACGCTTTTCAACTCC
CAGGTAGCCGCTTGTTTGAGGATAAAACCCACTTATGTGATGTGCCACAG
ATGTACAACGACAGAACATGACATAGTCTGGATGTTGTCTGTGATTCCCT
CCTTTTGACCTGGTGTTCTTGCTAGCTACGGGTTGGGGGAAAACCTCCTC
TGGAGTCCAAAGCATGATGTCACATTCCCCCTTTTTATTTTACGTCCTCA
ATgatttggaggggggaggcgtcgaCGACATTTTGCAACATGGTTTTAAT
CCTTTTCAGAGGAACTTATAGTTTATGTCCTGCATTCGAATGTTTTTCTA
CTTCACTTTCAAAACAGACGGGCGCCGCCGGCCTTATAATTCATTGACCC
GCAGGATGGTTTCAATTAAGTTAAAAACCATACAAGGCCGCGAATTTTCG
GTTGACGGTGTCGAGCTTTCCCAAACGGTACGGTCGTCGATCATAATGTA
ATGTAAACATACGTAGGGGGAGATAATTGTCGTATCTCGGGCCATGTCTG
CCTTATTTCAGGCTTCCTGAGGCAGAACTCTCACCCGCTCAAAACCCTGC
CTTCGTCCATTTTCGAAGTTAtgttctccttcccgacATCTATGAATACT
TTATTCATTGGTGTCAATCATCTTTTGGAACTTCGTCGTTCTACTTTATT
TCTTTATGGAAACAGATCAATGACCTGAAAGCTGCTGTGGaggcatcccc
tccttcgggaGAGGTCTTACCCGCGGATCGACTGAAGCTGATCCATCAAG
GTAAGAGACATACACAGGCAAACACGGGAAAAGCAGTTGCTCGCGATTTT
TGTGAGGTCGCGGACGGTCATTATGAAGGTGTTTAAGCCTTGATCCCCGC
TTTAAGGGCACCTGCCTGCGAATCCTCCTCATTGCACCCCACATCTTCCA
CACGAGTATTGCTCAGCTCCTTTCCTACACCCTAAATCCTTGCTCCGTAG
GCAAAGAACTGACCCAGGGTGATTCCACCCTCTCTGCGTACAACATCGCG
GACAATGACCTGGTCATCGTAATGCTCACCCGCCACAAGCCGCCagctcc
ctcgccatccgCCCCtgcgcccgctcctccccctccttccctccctccct
cccaacctccttcAAATCCGCACGTGGAACAGCTGAAAGAGATGGGCTTT
CCCGAGTCGCAGGTTACGGCGGCCCTCCGGGCAGCGCAAAACGATGCCGA
TCTGGCTGTCGAATTTCTTTTCAGTGGGaacattccttcctctcctgccc
ccttgTCGGCCTTGGAATCCGCGGTAGGAGTGGAGAGGGATGCAGAAAGg
gctgcggaggaagaggcaggagccGGGACGAATGCGACGGTGGTGGCGCA
GTTATTAAGTCACCCGGAGATGGAACGTGTAAGTGGGCGgggagcgagaa
gaagaagggaagggagaagaaagctaGCGAGGAAGCACACAAGCTTAAGT
CCATGCAACAAATGTTCTATTCCCAATCTTGGTCTCCTAGATTCGCCGCG
TTGTCAGGGAAAACCCGAGCGGGATGGAGAGCATGGTTGCTGCCCTGGCC
GTCACCCACCCGGACCTCGTCCGTATCATTAATGAGGACCCTGCTAGCTT
TTGGGCAgccttggaggagaatgaagaggggatggaggaagacgaagggg
aagaggaggaggaggcgggtgtGTTGGGAGCTCTGGAGTTGTCGGAAGCA
GATGAGGCTGCCATCGCGCGTTTGATGGAGATGGGCTTCGGTAGGGAACA
AGTAGTGGAAGCTTATATCTTgtccgggaaggaagaaaacgcGGCGGTCA
ATTTGCTCTTGGGAGGATGAAGTTTTCAGGGGGGCAGGgtagagtgggag
ggagcaaggggagggtcggggggggggcatggtgGGCGATGAACCCAACA
CGGGGGAGGCAAGATCAAGGAGGTCGATGATGCAAAGAAGATTGTGCGAT
GCAAGTACATTAAAACTTGTTGTGATACAATATTTTATCCACACGTGCGT
GGCACATCCAATGTGTGGGAGCATCTTTAAAAATGCGTCGAGGAGTGTTC
GGAACCGGTATTGATGTTCTCTGGGACAAGAACCCGTACTTTCAACAGAG
CACAATTTTTTGCTTGAATGTGAGGTCATTGAATGTATCGATCTGAGGTT
GTTGCAAGGAAAGTCCCCAATGATTGAAGGCGGGAATGTAGCAATATTGA
GCGTAGCTTTAGAGCTGAGATATATTTAGTTTGGGGTTGACTGATAAAAT
CCTCCATTGGAAAAATGGTAGAAATTTTAGCCGGGAGCAGCTC

Coding sequence (CDS) from alignment at CM002460.1:135071..137663+

>rna2877 ID=rna2877|Name=rna2877|organism=Nannochloropsis gaditana|type=CDS|length=3984bp|location=Sequence derived from alignment at CM002460.1:135071..137663+ (Nannochloropsis gaditana)
ATGTCCTGCATTCGAATGTTTTTCTACTTCACTTTCAAAACAGACGGGCG
CCGCCGGCCTTATAATTCATTGACCCGCAGGATGGTTTCAATTAAGTTAA
AAACCATACAAGGCCGCGAATTTTCGGTTGACGGTGTCGAGCTTTCCCAA
ACGATCAATGACCTGAAAGCTGCTGTGGaggcatcccctccttcgggaGA
GGTCTTACCCGCGGATCGACTGAAGCTGATCCATCAAGGCAAAGAACTGA
CCCAGGGTGATTCCACCCTCTCTGCGTACAACATCGCGGACAATGACCTG
GTCATCGTAATGCTCACCCGCCACAAGCCGCCagctccctcgccatccgC
CCCtgcgcccgctcctccccctccttccctccctccctcccaacctcctt
cAAATCCGCACGTGGAACAGCTGAAAGAGATGGGCTTTCCCGAGTCGCAG
GTTACGGCGGCCCTCCGGGCAGCGCAAAACGATGCCGATCTGGCTGTCGA
ATTTCTTTTCAGTGGGaacattccttcctctcctgcccccttgTCGGCCT
TGGAATCCGCGGTAGGAGTGGAGAGGGATGCAGAAAGggctgcggaggaa
gaggcaggagccGGGACGAATGCGACGGTGGTGGCGCAGTTATTAAGTCA
CCCGGAGATGGAACGTATTCGCCGCGTTGTCAGGGAAAACCCGAGCGGGA
TGGAGAGCATGGTTGCTGCCCTGGCCGTCACCCACCCGGACCTCGTCCGT
ATCATTAATGAGGACCCTGCTAGCTTTTGGGCAgccttggaggagaatga
agaggggatggaggaagacgaaggggaagaggaggaggaggcgggtgtGT
TGGGAGCTCTGGAGTTGTCGGAAGCAGATGAGGCTGCCATCGCGCGTTTG
ATGGAGATGGGCTTCGGTAGGGAACAAGTAGTGGAAGCTTATATCTTgtc
cgggaaggaagaaaacgcGGCGGTCAATTTGCTCTTGGGAGGATGAATGT
CCTGCATTCGAATGTTTTTCTACTTCACTTTCAAAACAGACGGGCGCCGC
CGGCCTTATAATTCATTGACCCGCAGGATGGTTTCAATTAAGTTAAAAAC
CATACAAGGCCGCGAATTTTCGGTTGACGGTGTCGAGCTTTCCCAAACGA
TCAATGACCTGAAAGCTGCTGTGGaggcatcccctccttcgggaGAGGTC
TTACCCGCGGATCGACTGAAGCTGATCCATCAAGGCAAAGAACTGACCCA
GGGTGATTCCACCCTCTCTGCGTACAACATCGCGGACAATGACCTGGTCA
TCGTAATGCTCACCCGCCACAAGCCGCCagctccctcgccatccgCCCCt
gcgcccgctcctccccctccttccctccctccctcccaacctccttcAAA
TCCGCACGTGGAACAGCTGAAAGAGATGGGCTTTCCCGAGTCGCAGGTTA
CGGCGGCCCTCCGGGCAGCGCAAAACGATGCCGATCTGGCTGTCGAATTT
CTTTTCAGTGGGaacattccttcctctcctgcccccttgTCGGCCTTGGA
ATCCGCGGTAGGAGTGGAGAGGGATGCAGAAAGggctgcggaggaagagg
caggagccGGGACGAATGCGACGGTGGTGGCGCAGTTATTAAGTCACCCG
GAGATGGAACGTATTCGCCGCGTTGTCAGGGAAAACCCGAGCGGGATGGA
GAGCATGGTTGCTGCCCTGGCCGTCACCCACCCGGACCTCGTCCGTATCA
TTAATGAGGACCCTGCTAGCTTTTGGGCAgccttggaggagaatgaagag
gggatggaggaagacgaaggggaagaggaggaggaggcgggtgtGTTGGG
AGCTCTGGAGTTGTCGGAAGCAGATGAGGCTGCCATCGCGCGTTTGATGG
AGATGGGCTTCGGTAGGGAACAAGTAGTGGAAGCTTATATCTTgtccggg
aaggaagaaaacgcGGCGGTCAATTTGCTCTTGGGAGGATGAATGTCCTG
CATTCGAATGTTTTTCTACTTCACTTTCAAAACAGACGGGCGCCGCCGGC
CTTATAATTCATTGACCCGCAGGATGGTTTCAATTAAGTTAAAAACCATA
CAAGGCCGCGAATTTTCGGTTGACGGTGTCGAGCTTTCCCAAACGATCAA
TGACCTGAAAGCTGCTGTGGaggcatcccctccttcgggaGAGGTCTTAC
CCGCGGATCGACTGAAGCTGATCCATCAAGGCAAAGAACTGACCCAGGGT
GATTCCACCCTCTCTGCGTACAACATCGCGGACAATGACCTGGTCATCGT
AATGCTCACCCGCCACAAGCCGCCagctccctcgccatccgCCCCtgcgc
ccgctcctccccctccttccctccctccctcccaacctccttcAAATCCG
CACGTGGAACAGCTGAAAGAGATGGGCTTTCCCGAGTCGCAGGTTACGGC
GGCCCTCCGGGCAGCGCAAAACGATGCCGATCTGGCTGTCGAATTTCTTT
TCAGTGGGaacattccttcctctcctgcccccttgTCGGCCTTGGAATCC
GCGGTAGGAGTGGAGAGGGATGCAGAAAGggctgcggaggaagaggcagg
agccGGGACGAATGCGACGGTGGTGGCGCAGTTATTAAGTCACCCGGAGA
TGGAACGTATTCGCCGCGTTGTCAGGGAAAACCCGAGCGGGATGGAGAGC
ATGGTTGCTGCCCTGGCCGTCACCCACCCGGACCTCGTCCGTATCATTAA
TGAGGACCCTGCTAGCTTTTGGGCAgccttggaggagaatgaagagggga
tggaggaagacgaaggggaagaggaggaggaggcgggtgtGTTGGGAGCT
CTGGAGTTGTCGGAAGCAGATGAGGCTGCCATCGCGCGTTTGATGGAGAT
GGGCTTCGGTAGGGAACAAGTAGTGGAAGCTTATATCTTgtccgggaagg
aagaaaacgcGGCGGTCAATTTGCTCTTGGGAGGATGAATGTCCTGCATT
CGAATGTTTTTCTACTTCACTTTCAAAACAGACGGGCGCCGCCGGCCTTA
TAATTCATTGACCCGCAGGATGGTTTCAATTAAGTTAAAAACCATACAAG
GCCGCGAATTTTCGGTTGACGGTGTCGAGCTTTCCCAAACGATCAATGAC
CTGAAAGCTGCTGTGGaggcatcccctccttcgggaGAGGTCTTACCCGC
GGATCGACTGAAGCTGATCCATCAAGGCAAAGAACTGACCCAGGGTGATT
CCACCCTCTCTGCGTACAACATCGCGGACAATGACCTGGTCATCGTAATG
CTCACCCGCCACAAGCCGCCagctccctcgccatccgCCCCtgcgcccgc
tcctccccctccttccctccctccctcccaacctccttcAAATCCGCACG
TGGAACAGCTGAAAGAGATGGGCTTTCCCGAGTCGCAGGTTACGGCGGCC
CTCCGGGCAGCGCAAAACGATGCCGATCTGGCTGTCGAATTTCTTTTCAG
TGGGaacattccttcctctcctgcccccttgTCGGCCTTGGAATCCGCGG
TAGGAGTGGAGAGGGATGCAGAAAGggctgcggaggaagaggcaggagcc
GGGACGAATGCGACGGTGGTGGCGCAGTTATTAAGTCACCCGGAGATGGA
ACGTATTCGCCGCGTTGTCAGGGAAAACCCGAGCGGGATGGAGAGCATGG
TTGCTGCCCTGGCCGTCACCCACCCGGACCTCGTCCGTATCATTAATGAG
GACCCTGCTAGCTTTTGGGCAgccttggaggagaatgaagaggggatgga
ggaagacgaaggggaagaggaggaggaggcgggtgtGTTGGGAGCTCTGG
AGTTGTCGGAAGCAGATGAGGCTGCCATCGCGCGTTTGATGGAGATGGGC
TTCGGTAGGGAACAAGTAGTGGAAGCTTATATCTTgtccgggaaggaaga
aaacgcGGCGGTCAATTTGCTCTTGGGAGGATGA

Synonyms

Publications