EWM27799.1, cds2869 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|585110100|gb|EWM27799.1| (uv excision repair protein rad23 [Nannochloropsis gaditana]) HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0 Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0 Query: 1 MSCIRMFFYFTFKTDGRRRPYNSLTRRMVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG 331 MSCIRMFFYFTFKTDGRRRPYNSLTRRMVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG Sbjct: 1 MSCIRMFFYFTFKTDGRRRPYNSLTRRMVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG 331
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|146161955|ref|XP_001008308.2| (UV excision repair RAD23-like protein, putative [Tetrahymena thermophila SB210] >gi|146146601|gb|EAR88063.2| UV excision repair RAD23-like protein, putative (macronuclear) [Tetrahymena thermophila SB210]) HSP 1 Score: 120.939 bits (302), Expect = 1.076e-27 Identity = 96/345 (27.83%), Postives = 163/345 (47.25%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPP---------------PPSLPP---SQPPSNPH-------------------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPA----PLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAAL---EENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329 + I +KT++G +F +E + T+ +LK + A+ E D +KL+H+GK+LT+ TL I DND VI+M + K A AP A P ++P SQP + +++++ MGF +V AL+AA + + AV++L SGNIP P+ PL L+ GVE+ +AQL +P+ + I + +R+NP+ ++ ++ LA T+PD+ R++ ++P +F L ENE G + A++++ ++A I ++ MGF + +EAYI K + A+N L Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKI-ATEKQKE---KDTIKLVHKGKQLTEDSKTLGELGIKDNDFVILMFFQKK--AEKEDAPQQAQSDTTSTTSAASTTATNPTTVPKPAVSQPATTQQTGSQGTGSDLLQGPELEAKIKEIESMGFERPKVLQALKAAYYNPERAVDYLLSGNIPKEPSQQQSPLQGLQGP-GVEQ------------------LAQLAQNPQFQHIAQAIRQNPALLQPVMQQLAQTNPDVARLLQQNPQAFLQLLLAASENEGG----------QTLPPNAIQVTPEEKADIDDIISMGFDKNDALEAYITCDKNKELAINYLF 310
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|1173894277|gb|OQR70238.1| (UV excision repair protein RAD23B-like [Tropilaelaps mercedesae]) HSP 1 Score: 119.783 bits (299), Expect = 1.374e-27 Identity = 100/353 (28.33%), Postives = 161/353 (45.61%), Query Frame = 0 Query: 28 MVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRH-----------------KPPAPSPSAPAPAPPPPSLPPSQPPSNPH-------------------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGT-----------NATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDE----GEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329 ++++ LK + F+++ ++ T+ ++KA + G+ PA KLI QG+ + D L AY + + V++M+++ PPAP+ + + PP P PSNP V + EMG+P QV ALRA+ N+ D AVE+L +G P P +GV A GAGT + ++ L + P+ +++R +RENP+ +ES++ L +PD++R+I ++ F L E E+G E+ GEE + ++ AD+ AI RL +GF VV+AY K EN A N LL Sbjct: 2 LLTVSLKCLTNELFTIE-IDDECTVKEMKAKIYEQ--KGDAFPAAHQKLIAQGR-IMADDEKLKAYELHNVKFVVIMVSKPAPAPAAPPGGAQAASKVTPPAPAETPASTDNPPRESPTPTRPSNPTPNAATGESALVRGVDYESMVRNITEMGYPRDQVERALRASYNNPDRAVEYLVTGIPPEEDEP------QIGVNLPAT------GGAGTVTAPGGPPGQGSEPPLSFLRTQPQFQQMRNAIRENPALLESIIQQLGSNNPDMLRLITQNQDEFMHLLNE-EDGRGEEPLAALGEEIPGPPLRFEAHVTPADKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 337
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|833482120|ref|XP_012766530.1| (DNA repair protein Rad23, putatitve, putative [Babesia bigemina] >gi|656183503|emb|CDR94344.1| DNA repair protein Rad23, putatitve, putative [Babesia bigemina]) HSP 1 Score: 117.857 bits (294), Expect = 5.060e-27 Identity = 107/326 (32.82%), Postives = 161/326 (49.39%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAY-NIADNDLVIVMLTRHKPPAPS--PSAPAPAPPPPSLPPSQPPSNP-----------------HVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEG-----MEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329 + +K+KT+ E VD VE T+ DL AVEA+ P+ LP+DR KLIH GK L + + LS Y +I D D VIV +T +PP S P P PP P + S ++ ++ EMGFP ++V A+ AA N+ + AVEFL +GNIPS P L + GV D + + A + + + SHP ++IR+ + +P ++ ++ + T+P+L++ I E F L N G + D+G ++L+E D A + RL +GF R V+EA++ K E A N LL Sbjct: 1 MKLKIKTLNNLEAEVD-VEADITVADLMKAVEAALPA---LPSDRQKLIHSGKVLKR-ELRLSDYSDIKDGDKVIV-ITSKQPPTVSTAPVVEQPVSPPEVQPSATAVSTEPLASASSRFVTGSELEMNISRICEMGFPRAEVEQAMAAAFNNPERAVEFLSTGNIPS---PGDFLLNP-GV--DDHQPSNNAMHAASQDVSLQSIQSHPAFQQIRQALNSDPQMLQQLLENIGSTNPELLQNIVEHQDEFMNML--NSAGGADPLLSGDDGP--------AVVQLTEEDVAIVERLEGLGFPRPAVIEAFLACDKNEEMAANYLL 304
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|528891492|gb|EPZ31965.1| (Ubiquitin domain-containing protein [Rozella allomycis CSF55]) HSP 1 Score: 118.242 bits (295), Expect = 7.041e-27 Identity = 108/356 (30.34%), Postives = 177/356 (49.72%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEV-LPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAP----SPSAP---------APAPPPP-----------SLPPSQPPSNPHVEQ---------------LKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPA-----PLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIIN---------EDPASFWAALEENEEGMEE-DEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329 + I L+T+Q + + ++ VE T++ LK +E G+ P KLI+ G+ L Q D T+++YN+ +ND ++M+T+ AP +PS P A PP + PS PH Q L EMGFP+ QV +AL+A+ +AD AVEFL + IPS A P +A + V A+E + NA ++ + S P+++++R++V+ NP ++ ++ L + +P+L+++I+ E+P +F L + E MEE DEG E+E GV ++++ +E AI RL +GF R + +EA+ K E A N L Sbjct: 1 MKITLRTLQQKSYPLE-VEPESTVSTLKTKIE-----GDFGHPVASQKLIYSGQIL-QDDRTIASYNVKENDFFVLMITKAPMKAPAAVSTPSTPVASNSSVPVAKTSNPPETSGNVASTESATAAGNAPSQPHPSQMFGVSREQYEAMLNNLVEMGFPKEQVVSALKASYFNADRAVEFLMNQGIPSDAAENNQSPPTAT-NPVTPAATGNAVAQESLPSNPNA--LSGISSDPQLQQLRQIVQSNPQVLQPLLQQLGMNNPELMQVIDPPFVIKAISENPEAFLQMLSQQGENMEEYDEGTEQE--GV-QYIQVTPEEEEAINRLTALGFDRARAIEAFFACDKNETMAANYLF 343
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|674576766|emb|CDS37205.1| (uv excision repair protein rad23 b [Echinococcus multilocularis]) HSP 1 Score: 117.857 bits (294), Expect = 7.776e-27 Identity = 102/349 (29.23%), Postives = 164/349 (46.99%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPS--GEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKP----------------------PAPSPSAPAPAPPPPSLP--PSQP--PSNPH-----------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIP--------SSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLG 330 + + KT++ F+++ VE S + D+K ++ S P+ GE +LKLI GK L + D +LS Y + D + V+VM KP P S S PA A PPPS PS P PSN + + + EMGF +V ALR + N+ + AVE+L SGN+P S P++ + +G + ++ R E V L P+ +++R +R NP + + L+V++PD+VR I+ + F + N + E ++ ++ + L+E ++ AI RL +GF ++V++AY K E A NLLL Sbjct: 1 MQLTFKTLKQTTFTLE-VEESDLVGDVKEKIKKSRPNDFGE----SKLKLICSGKVL-EDDKSLSDYKVTDKNFVVVMAQIVKPLKEVLPEPIKKTETCAVSPPENPGVSTSTPASAVPPPSNAEVPSAPSNPSNSNDLLTGETLESAIRNMIEMGFERVKVEQALRMSFNNPERAVEYLISGNLPEEVAEQPASQDQPVATPQQGIGFDPESLRNLSSEE-------VYPILAQVPQFQQLR-ALRGNPQLLSQFIQQLSVSYPDVVRAIHANENGFLDFI--NSDAEETNQESDQPRPPAQHIIRLTEQEKTAIERLKALGFSEDEVIQAYFACDKNEELAANLLLS 333
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|751183043|gb|KIL68983.1| (hypothetical protein M378DRAFT_158134 [Amanita muscaria Koide BX008]) HSP 1 Score: 115.546 bits (288), Expect = 5.158e-26 Identity = 105/360 (29.17%), Postives = 167/360 (46.39%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPH---------------------------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALE---------SAVGVERDAERAAEEEAG------------------AGTNATVVAQ-----LLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329 + I +KT Q + F VD ELS TI D+K+ ++ + + P K+I+ GK L+ D ++ + I + D +++M+T+ KP PSP+ A +PP S P S P V+ + EMGFP QV ALRA+ N+ D AVE+L +G PA L S+VG AA G G+ A V A+ L +P+++++R++V +NP+ ++ ++ LA ++P + ++I + P + L E +EDEG+ + + V+ ++E + AAI RL +GF R VEAY K E A N L Sbjct: 1 MKITIKTTQQKVFHVDA-ELSDTIGDVKSKIQET----QGHPVTDQKIIYSGKILS-DDKSIESCGIKEKDFLVLMVTKRKP-TPSPAPSATSPPVASAQPVANESTPSSTVLSHDESTSTQTSVSFLSGEALQTTVQNMVEMGFPREQVLRALRASFNNPDRAVEYLMNG----IPAHLDTEAAPAPAPANPSSVGSPNANAPAASASPGHQNLFQLAHQQQHQQPHPMGSAAAVQARPDLSALRDNPQIQQLRQLVEQNPALIQPLIQQLASSNPAIAQLIAQHPEALLQLLNVPE---DEDEGDAQGSSQVIS---VTEEERAAIERLEALGFPRYAAVEAYFACDKNEELAANYLF 343
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|576699099|gb|EUB62628.1| (UV excision repair protein RAD23 B [Echinococcus granulosus] >gi|674566057|emb|CDS19154.1| uv excision repair protein rad23 b [Echinococcus granulosus]) HSP 1 Score: 110.153 bits (274), Expect = 4.243e-24 Identity = 96/347 (27.67%), Postives = 158/347 (45.53%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKP-----PAPSPSAPAPAPPPPSLP-------------------PSQP--PSNPH-----------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIP--------SSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLG 330 + + KT++ F+++ VE S + D+K ++ S P+ +LKLI GK L + D +LS Y + D + V+VM KP P P A PP P PS P PSN + + + EMGF +V ALR + N+ + AVE+L SGN+P S P++ + +G + ++ R E V L P+ +++R +R NP + + L+V++PD+VR I+ + F + N + E ++ ++ + L+E ++ AI RL +GF ++V++AY K E A NLLL Sbjct: 1 MQLTFKTLKQTTFTLE-VEESDLVGDVKEKIKKSRPND--FGESKLKLICSGKVL-EDDKSLSDYKVTDKNFVVVMAQIVKPLKEALPEPIKKTETCAVSPPENPGVSTPTPAPPVPPPSDAEAPSAPSNPSNSNDLLTGETLESAIRNMIEMGFERVKVEQALRMSFNNPERAVEYLISGNLPEEVAEQPASQDQPVATPQQGIGFDPESLRNLSSEE-------VYPILAQVPQFQQLR-ALRGNPQLLSQFIQQLSVSYPDVVRAIHANENGFLDFI--NSDAEETNQESDQPRPPAQHIIRLTEQEKTAIERLKALGFSEDEVIQAYFACDKNEELAANLLLS 333
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|922486834|ref|XP_013583780.1| (PREDICTED: probable ubiquitin receptor RAD23a isoform X4 [Brassica oleracea var. oleracea]) HSP 1 Score: 110.538 bits (275), Expect = 4.402e-24 Identity = 104/348 (29.89%), Postives = 167/348 (47.99%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPS-PSAPAPAPPP---------------PSLPPSQPPSN--------PHVEQLKEMG---FPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNAT-------------------VVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGME-EDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329 + + +KT++G F + V+ S TI +K +E S G P + LIH GK L + ++TL + + ++VML++ K + + PS+ PA P P+ Q PS V+Q+ EMG + E V ALRAA + + AV++L+SG S APL+ + GV AE+AA A G NA+ + L S+ + +++R +V NP ++ M+ L +P L+R+I E+ A F L E EG + E + ++ E + A+ ++ A++ AI RL MGF R V+EA++ + E A N LL Sbjct: 1 MKLTVKTLKGSHFEIR-VQPSDTIMAVKKNIEDSQSKGS-YPCGQQLLIHNGKVL-KDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPAAPSTTQSIAANSTLAQEQPADTDRQTPSTLVSGSSVEQRVQQIMEMGGGSWDEETVLRALRAAYYNTERAVDYLYSGIPESEEAPLTNVS---GVGSGAEQAAPPPASGGPNASPLDLFPQEAVSAAGAGDLGTLEFLRSNDQFQQLRSMVNSNPQILQPMLLELGKQNPQLLRLIQENQAEFVQLLNEPYEGSDGEMDVFDQPEQEMPHAVNVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEQLAANYLL 342
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|922486831|ref|XP_013583779.1| (PREDICTED: probable ubiquitin receptor RAD23a isoform X3 [Brassica oleracea var. oleracea]) HSP 1 Score: 109.383 bits (272), Expect = 1.254e-23 Identity = 104/351 (29.63%), Postives = 166/351 (47.29%), Query Frame = 0 Query: 29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHK------PPAPSPSAPAPA-------------PPPPSLPPSQPPSN--------PHVEQLKEMG---FPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNAT-------------------VVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGME-EDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329 + + +KT++G F + V+ S TI +K +E S G P + LIH GK L + ++TL + + ++VML++ K P + P+AP+ P S Q PS V+Q+ EMG + E V ALRAA + + AV++L+SG S APL+ + GV AE+AA A G NA+ + L S+ + +++R +V NP ++ M+ L +P L+R+I E+ A F L E EG + E + ++ E + A+ ++ A++ AI RL MGF R V+EA++ + E A N LL Sbjct: 1 MKLTVKTLKGSHFEIR-VQPSDTIMAVKKNIEDSQSKGS-YPCGQQLLIHNGKVL-KDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPAAPSTTQSIAANSTLAQEQPAAQSDTDRQTPSTLVSGSSVEQRVQQIMEMGGGSWDEETVLRALRAAYYNTERAVDYLYSGIPESEEAPLTNVS---GVGSGAEQAAPPPASGGPNASPLDLFPQEAVSAAGAGDLGTLEFLRSNDQFQQLRSMVNSNPQILQPMLLELGKQNPQLLRLIQENQAEFVQLLNEPYEGSDGEMDVFDQPEQEMPHAVNVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEQLAANYLL 345 The following BLAST results are available for this feature:
BLAST of EWM27799.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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