EWM27799.1, cds2869 (CDS) Nannochloropsis gaditana

Overview
NameEWM27799.1
Unique Namecds2869
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:135645..135797 +
Alignment locationCM002460.1:136036..136120 +
Alignment locationCM002460.1:136321..136748 +
Alignment locationCM002460.1:136861..137190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27799.1
Productuv excision repair protein rad23
Orig transcript idgnl|cribi|Naga_100149g7.2648.mrna
GeneRad23
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:135645..135797 +
CM002460.1supercontigCM002460.1:136036..136120 +
CM002460.1supercontigCM002460.1:136321..136748 +
CM002460.1supercontigCM002460.1:136861..137190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003684damaged DNA binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR029071Ubiquitin-rel_dom
IPR015360XPC-bd
IPR000449UBA/Ts_N
IPR015940UBA/transl_elong_EF1B_N_euk
IPR000626Ubiquitin-like
IPR004806Rad23
Homology
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|585110100|gb|EWM27799.1| (uv excision repair protein rad23 [Nannochloropsis gaditana])

HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MSCIRMFFYFTFKTDGRRRPYNSLTRRMVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG 331
            MSCIRMFFYFTFKTDGRRRPYNSLTRRMVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG
Sbjct:    1 MSCIRMFFYFTFKTDGRRRPYNSLTRRMVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG 331          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|146161955|ref|XP_001008308.2| (UV excision repair RAD23-like protein, putative [Tetrahymena thermophila SB210] >gi|146146601|gb|EAR88063.2| UV excision repair RAD23-like protein, putative (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 120.939 bits (302), Expect = 1.076e-27
Identity = 96/345 (27.83%), Postives = 163/345 (47.25%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPP---------------PPSLPP---SQPPSNPH-------------------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPA----PLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAAL---EENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329
            + I +KT++G +F    +E + T+ +LK  + A+    E    D +KL+H+GK+LT+   TL    I DND VI+M  + K  A    AP  A                 P ++P    SQP +                      +++++ MGF   +V  AL+AA  + + AV++L SGNIP  P+    PL  L+   GVE+                  +AQL  +P+ + I + +R+NP+ ++ ++  LA T+PD+ R++ ++P +F   L    ENE G          +     A++++  ++A I  ++ MGF +   +EAYI   K +  A+N L 
Sbjct:    1 MKINIKTLKGTDFFDVNLEETATVAELKEKI-ATEKQKE---KDTIKLVHKGKQLTEDSKTLGELGIKDNDFVILMFFQKK--AEKEDAPQQAQSDTTSTTSAASTTATNPTTVPKPAVSQPATTQQTGSQGTGSDLLQGPELEAKIKEIESMGFERPKVLQALKAAYYNPERAVDYLLSGNIPKEPSQQQSPLQGLQGP-GVEQ------------------LAQLAQNPQFQHIAQAIRQNPALLQPVMQQLAQTNPDVARLLQQNPQAFLQLLLAASENEGG----------QTLPPNAIQVTPEEKADIDDIISMGFDKNDALEAYITCDKNKELAINYLF 310          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|1173894277|gb|OQR70238.1| (UV excision repair protein RAD23B-like [Tropilaelaps mercedesae])

HSP 1 Score: 119.783 bits (299), Expect = 1.374e-27
Identity = 100/353 (28.33%), Postives = 161/353 (45.61%), Query Frame = 0
Query:   28 MVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRH-----------------KPPAPSPSAPAPAPPPPSLPPSQPPSNPH-------------------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGT-----------NATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDE----GEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329
            ++++ LK +    F+++ ++   T+ ++KA +      G+  PA   KLI QG+ +   D  L AY + +   V++M+++                   PPAP+ +  +   PP   P    PSNP                    V  + EMG+P  QV  ALRA+ N+ D AVE+L +G  P    P       +GV   A        GAGT           +   ++ L + P+ +++R  +RENP+ +ES++  L   +PD++R+I ++   F   L E E+G  E+     GEE     +     ++ AD+ AI RL  +GF    VV+AY    K EN A N LL
Sbjct:    2 LLTVSLKCLTNELFTIE-IDDECTVKEMKAKIYEQ--KGDAFPAAHQKLIAQGR-IMADDEKLKAYELHNVKFVVIMVSKPAPAPAAPPGGAQAASKVTPPAPAETPASTDNPPRESPTPTRPSNPTPNAATGESALVRGVDYESMVRNITEMGYPRDQVERALRASYNNPDRAVEYLVTGIPPEEDEP------QIGVNLPAT------GGAGTVTAPGGPPGQGSEPPLSFLRTQPQFQQMRNAIRENPALLESIIQQLGSNNPDMLRLITQNQDEFMHLLNE-EDGRGEEPLAALGEEIPGPPLRFEAHVTPADKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 337          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|833482120|ref|XP_012766530.1| (DNA repair protein Rad23, putatitve, putative [Babesia bigemina] >gi|656183503|emb|CDR94344.1| DNA repair protein Rad23, putatitve, putative [Babesia bigemina])

HSP 1 Score: 117.857 bits (294), Expect = 5.060e-27
Identity = 107/326 (32.82%), Postives = 161/326 (49.39%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAY-NIADNDLVIVMLTRHKPPAPS--PSAPAPAPPPPSLPPSQPPSNP-----------------HVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEG-----MEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329
            + +K+KT+   E  VD VE   T+ DL  AVEA+ P+   LP+DR KLIH GK L + +  LS Y +I D D VIV +T  +PP  S  P    P  PP   P +   S                   ++ ++ EMGFP ++V  A+ AA N+ + AVEFL +GNIPS   P   L +  GV  D  + +     A +    +  + SHP  ++IR+ +  +P  ++ ++  +  T+P+L++ I E    F   L  N  G     +  D+G           ++L+E D A + RL  +GF R  V+EA++   K E  A N LL
Sbjct:    1 MKLKIKTLNNLEAEVD-VEADITVADLMKAVEAALPA---LPSDRQKLIHSGKVLKR-ELRLSDYSDIKDGDKVIV-ITSKQPPTVSTAPVVEQPVSPPEVQPSATAVSTEPLASASSRFVTGSELEMNISRICEMGFPRAEVEQAMAAAFNNPERAVEFLSTGNIPS---PGDFLLNP-GV--DDHQPSNNAMHAASQDVSLQSIQSHPAFQQIRQALNSDPQMLQQLLENIGSTNPELLQNIVEHQDEFMNML--NSAGGADPLLSGDDGP--------AVVQLTEEDVAIVERLEGLGFPRPAVIEAFLACDKNEEMAANYLL 304          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|528891492|gb|EPZ31965.1| (Ubiquitin domain-containing protein [Rozella allomycis CSF55])

HSP 1 Score: 118.242 bits (295), Expect = 7.041e-27
Identity = 108/356 (30.34%), Postives = 177/356 (49.72%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEV-LPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAP----SPSAP---------APAPPPP-----------SLPPSQPPSNPHVEQ---------------LKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPA-----PLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIIN---------EDPASFWAALEENEEGMEE-DEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329
            + I L+T+Q + + ++ VE   T++ LK  +E     G+   P    KLI+ G+ L Q D T+++YN+ +ND  ++M+T+    AP    +PS P         A    PP           +      PS PH  Q               L EMGFP+ QV +AL+A+  +AD AVEFL +  IPS  A     P +A  + V         A+E   +  NA  ++ + S P+++++R++V+ NP  ++ ++  L + +P+L+++I+         E+P +F   L +  E MEE DEG E+E  GV   ++++  +E AI RL  +GF R + +EA+    K E  A N L 
Sbjct:    1 MKITLRTLQQKSYPLE-VEPESTVSTLKTKIE-----GDFGHPVASQKLIYSGQIL-QDDRTIASYNVKENDFFVLMITKAPMKAPAAVSTPSTPVASNSSVPVAKTSNPPETSGNVASTESATAAGNAPSQPHPSQMFGVSREQYEAMLNNLVEMGFPKEQVVSALKASYFNADRAVEFLMNQGIPSDAAENNQSPPTAT-NPVTPAATGNAVAQESLPSNPNA--LSGISSDPQLQQLRQIVQSNPQVLQPLLQQLGMNNPELMQVIDPPFVIKAISENPEAFLQMLSQQGENMEEYDEGTEQE--GV-QYIQVTPEEEEAINRLTALGFDRARAIEAFFACDKNETMAANYLF 343          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|674576766|emb|CDS37205.1| (uv excision repair protein rad23 b [Echinococcus multilocularis])

HSP 1 Score: 117.857 bits (294), Expect = 7.776e-27
Identity = 102/349 (29.23%), Postives = 164/349 (46.99%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPS--GEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKP----------------------PAPSPSAPAPAPPPPSLP--PSQP--PSNPH-----------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIP--------SSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLG 330
            + +  KT++   F+++ VE S  + D+K  ++ S P+  GE     +LKLI  GK L + D +LS Y + D + V+VM    KP                      P  S S PA A PPPS    PS P  PSN +           +  + EMGF   +V  ALR + N+ + AVE+L SGN+P        S   P++  +  +G + ++ R    E        V   L   P+ +++R  +R NP  +   +  L+V++PD+VR I+ +   F   +  N +  E ++  ++        + L+E ++ AI RL  +GF  ++V++AY    K E  A NLLL 
Sbjct:    1 MQLTFKTLKQTTFTLE-VEESDLVGDVKEKIKKSRPNDFGE----SKLKLICSGKVL-EDDKSLSDYKVTDKNFVVVMAQIVKPLKEVLPEPIKKTETCAVSPPENPGVSTSTPASAVPPPSNAEVPSAPSNPSNSNDLLTGETLESAIRNMIEMGFERVKVEQALRMSFNNPERAVEYLISGNLPEEVAEQPASQDQPVATPQQGIGFDPESLRNLSSEE-------VYPILAQVPQFQQLR-ALRGNPQLLSQFIQQLSVSYPDVVRAIHANENGFLDFI--NSDAEETNQESDQPRPPAQHIIRLTEQEKTAIERLKALGFSEDEVIQAYFACDKNEELAANLLLS 333          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|751183043|gb|KIL68983.1| (hypothetical protein M378DRAFT_158134 [Amanita muscaria Koide BX008])

HSP 1 Score: 115.546 bits (288), Expect = 5.158e-26
Identity = 105/360 (29.17%), Postives = 167/360 (46.39%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPSPSAPAPAPPPPSLPPSQPPSNPH---------------------------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALE---------SAVGVERDAERAAEEEAG------------------AGTNATVVAQ-----LLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329
            + I +KT Q + F VD  ELS TI D+K+ ++ +    +  P    K+I+ GK L+  D ++ +  I + D +++M+T+ KP  PSP+  A +PP  S  P    S P                            V+ + EMGFP  QV  ALRA+ N+ D AVE+L +G     PA L             S+VG       AA    G                   G+ A V A+     L  +P+++++R++V +NP+ ++ ++  LA ++P + ++I + P +    L   E   +EDEG+ +  + V+    ++E + AAI RL  +GF R   VEAY    K E  A N L 
Sbjct:    1 MKITIKTTQQKVFHVDA-ELSDTIGDVKSKIQET----QGHPVTDQKIIYSGKILS-DDKSIESCGIKEKDFLVLMVTKRKP-TPSPAPSATSPPVASAQPVANESTPSSTVLSHDESTSTQTSVSFLSGEALQTTVQNMVEMGFPREQVLRALRASFNNPDRAVEYLMNG----IPAHLDTEAAPAPAPANPSSVGSPNANAPAASASPGHQNLFQLAHQQQHQQPHPMGSAAAVQARPDLSALRDNPQIQQLRQLVEQNPALIQPLIQQLASSNPAIAQLIAQHPEALLQLLNVPE---DEDEGDAQGSSQVIS---VTEEERAAIERLEALGFPRYAAVEAYFACDKNEELAANYLF 343          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|576699099|gb|EUB62628.1| (UV excision repair protein RAD23 B [Echinococcus granulosus] >gi|674566057|emb|CDS19154.1| uv excision repair protein rad23 b [Echinococcus granulosus])

HSP 1 Score: 110.153 bits (274), Expect = 4.243e-24
Identity = 96/347 (27.67%), Postives = 158/347 (45.53%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKP-----PAPSPSAPAPAPPPPSLP-------------------PSQP--PSNPH-----------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIP--------SSPAPLSALESAVGVERDAERAAEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGMEEDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLG 330
            + +  KT++   F+++ VE S  + D+K  ++ S P+       +LKLI  GK L + D +LS Y + D + V+VM    KP     P P       A  PP  P                   PS P  PSN +           +  + EMGF   +V  ALR + N+ + AVE+L SGN+P        S   P++  +  +G + ++ R    E        V   L   P+ +++R  +R NP  +   +  L+V++PD+VR I+ +   F   +  N +  E ++  ++        + L+E ++ AI RL  +GF  ++V++AY    K E  A NLLL 
Sbjct:    1 MQLTFKTLKQTTFTLE-VEESDLVGDVKEKIKKSRPND--FGESKLKLICSGKVL-EDDKSLSDYKVTDKNFVVVMAQIVKPLKEALPEPIKKTETCAVSPPENPGVSTPTPAPPVPPPSDAEAPSAPSNPSNSNDLLTGETLESAIRNMIEMGFERVKVEQALRMSFNNPERAVEYLISGNLPEEVAEQPASQDQPVATPQQGIGFDPESLRNLSSEE-------VYPILAQVPQFQQLR-ALRGNPQLLSQFIQQLSVSYPDVVRAIHANENGFLDFI--NSDAEETNQESDQPRPPAQHIIRLTEQEKTAIERLKALGFSEDEVIQAYFACDKNEELAANLLLS 333          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|922486834|ref|XP_013583780.1| (PREDICTED: probable ubiquitin receptor RAD23a isoform X4 [Brassica oleracea var. oleracea])

HSP 1 Score: 110.538 bits (275), Expect = 4.402e-24
Identity = 104/348 (29.89%), Postives = 167/348 (47.99%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPAPS-PSAPAPAPPP---------------PSLPPSQPPSN--------PHVEQLKEMG---FPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNAT-------------------VVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGME-EDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329
            + + +KT++G  F +  V+ S TI  +K  +E S   G   P  +  LIH GK L + ++TL    + +   ++VML++ K  + + PS+  PA P                P+    Q PS           V+Q+ EMG   + E  V  ALRAA  + + AV++L+SG   S  APL+ +    GV   AE+AA   A  G NA+                    +  L S+ + +++R +V  NP  ++ M+  L   +P L+R+I E+ A F   L E  EG + E +  ++ E  +  A+ ++ A++ AI RL  MGF R  V+EA++   + E  A N LL
Sbjct:    1 MKLTVKTLKGSHFEIR-VQPSDTIMAVKKNIEDSQSKGS-YPCGQQLLIHNGKVL-KDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPAAPSTTQSIAANSTLAQEQPADTDRQTPSTLVSGSSVEQRVQQIMEMGGGSWDEETVLRALRAAYYNTERAVDYLYSGIPESEEAPLTNVS---GVGSGAEQAAPPPASGGPNASPLDLFPQEAVSAAGAGDLGTLEFLRSNDQFQQLRSMVNSNPQILQPMLLELGKQNPQLLRLIQENQAEFVQLLNEPYEGSDGEMDVFDQPEQEMPHAVNVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEQLAANYLL 342          
BLAST of EWM27799.1 vs. NCBI_GenBank
Match: gi|922486831|ref|XP_013583779.1| (PREDICTED: probable ubiquitin receptor RAD23a isoform X3 [Brassica oleracea var. oleracea])

HSP 1 Score: 109.383 bits (272), Expect = 1.254e-23
Identity = 104/351 (29.63%), Postives = 166/351 (47.29%), Query Frame = 0
Query:   29 VSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHK------PPAPSPSAPAPA-------------PPPPSLPPSQPPSN--------PHVEQLKEMG---FPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERAAEEEAGAGTNAT-------------------VVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAALEENEEGME-EDEGEEEEEAGVLGALELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLL 329
            + + +KT++G  F +  V+ S TI  +K  +E S   G   P  +  LIH GK L + ++TL    + +   ++VML++ K      P +  P+AP+               P   S    Q PS           V+Q+ EMG   + E  V  ALRAA  + + AV++L+SG   S  APL+ +    GV   AE+AA   A  G NA+                    +  L S+ + +++R +V  NP  ++ M+  L   +P L+R+I E+ A F   L E  EG + E +  ++ E  +  A+ ++ A++ AI RL  MGF R  V+EA++   + E  A N LL
Sbjct:    1 MKLTVKTLKGSHFEIR-VQPSDTIMAVKKNIEDSQSKGS-YPCGQQLLIHNGKVL-KDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPAAPSTTQSIAANSTLAQEQPAAQSDTDRQTPSTLVSGSSVEQRVQQIMEMGGGSWDEETVLRALRAAYYNTERAVDYLYSGIPESEEAPLTNVS---GVGSGAEQAAPPPASGGPNASPLDLFPQEAVSAAGAGDLGTLEFLRSNDQFQQLRSMVNSNPQILQPMLLELGKQNPQLLRLIQENQAEFVQLLNEPYEGSDGEMDVFDQPEQEMPHAVNVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEQLAANYLL 345          
The following BLAST results are available for this feature:
BLAST of EWM27799.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110100|gb|EWM27799.1|0.000e+0100.00uv excision repair protein rad23 [Nannochloropsis ... [more]
gi|146161955|ref|XP_001008308.2|1.076e-2727.83UV excision repair RAD23-like protein, putative [T... [more]
gi|1173894277|gb|OQR70238.1|1.374e-2728.33UV excision repair protein RAD23B-like [Tropilaela... [more]
gi|833482120|ref|XP_012766530.1|5.060e-2732.82DNA repair protein Rad23, putatitve, putative [Bab... [more]
gi|528891492|gb|EPZ31965.1|7.041e-2730.34Ubiquitin domain-containing protein [Rozella allom... [more]
gi|674576766|emb|CDS37205.1|7.776e-2729.23uv excision repair protein rad23 b [Echinococcus m... [more]
gi|751183043|gb|KIL68983.1|5.158e-2629.17hypothetical protein M378DRAFT_158134 [Amanita mus... [more]
gi|576699099|gb|EUB62628.1|4.243e-2427.67UV excision repair protein RAD23 B [Echinococcus g... [more]
gi|922486834|ref|XP_013583780.1|4.402e-2429.89PREDICTED: probable ubiquitin receptor RAD23a isof... [more]
gi|922486831|ref|XP_013583779.1|1.254e-2329.63PREDICTED: probable ubiquitin receptor RAD23a isof... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2877rna2877Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications