rna2652, rna2652 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2652
Unique Name	rna2652
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1035
Alignment location	CM002459.1:885759..888893 -

Link to JBrowse

Properties


Property Name	Value
Product	tnf receptor-associated factor 4
Orig transcript id	gnl\|cribi\|Naga_100008g17.7915.mrna
Orig protein id	gnl\|cribi\|Naga_100008g17.7915
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:885759..888893 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g17	gene2536	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28023.1	cds2644	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2652	rna2652-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:885759..888893-
coding sequence from alignment at CM002459.1:885759..888893-

mRNA sequence

>rna2652 ID=rna2652|Name=rna2652|organism=Nannochloropsis gaditana|type=mRNA|length=1035bp
ATGTTACTCTCCCCTACTGAAGGACTTGTACATATGGGGTGGGGAGGTTC
TACTGGCCTCACCGCTGGGCTTCTCCTCTACCTGCGTTTTGAGTCCACAG
CCTCCATCGCCGCATTCCAAGAGTTGGGCAACATGCACGTCAAGGGTTAT
AAAGTAATAACCGTACCTCTGAATAATAATACGTCGAGCCCTTTCTCAAG
ATTTGTTTACGTTCGTCAACATAACAATAAAGGAGAAGAAGAGCTGCCTC
ATGGACGCACGCTCTTTTTGGCCAATGTTCCCGCGCAGATAGGTGTTGAT
GTTCACATGTACCTGAAAGAGGCTTTCGCAAAGTTTGGAGAAGTAGAGCT
CGTTCGCGTGAAGGAGTCATCGGACAACGACGCCATGAGCTCGTATACGG
TTAAGAGTGCGATCGCGTTTGTGATTTTTCGTAGTAGTAAAGGGGTTAAA
TCTGTGATGAATGCGCCATTCGGAGAAAGCCGTCTACCACCACCGTCGGT
CAAAGCGTCACTGGCAGAGTATAAGCCTTCCAAGCGACAACGGAAGCTGC
ATAGTCAATACCAGGATACAGCAAATGAAACCGAGCGAAAGGAGGCGATG
GCAGCAGCCTTGGAAGAGGATGTACAAAGCCTTGTTCGGCGTTTTCGGGC
TAAACTTCCGCAGGCGAAACTGTTGCAAGAGGAAGTCGACGATTATATGG
CAAGGTTTGAGGCAGCGGAGGAGGAAGCTGAACGCAAGCGTAAGGAGGCA
GCTTCCAAGCCGGACGCTGATGGCTTTGTTACAGTGGCATATGGTAAAAA
ACGTCGACGGGGGGGGGATGCTGACGGCAGTGATGGTATGAACGGCGGGA
GGAAAAGGGGGCGGGCAGGAAGTCAGAAGAAGAAGAAGAAGGAGAGGGAA
TTAAAGAACTTCTACGCCCATCAAATGCGGGAGGCAAAACGGGAGCAGCT
GGCGCGCCTCCGGACACGCTTCGAGGAGGATAAGGCACGAATAGAAAAGA
TGAAAGCTGCACGTAAGTTCAAGCCGTTTGGATGA

protein sequence of rna2652

>rna2652-protein ID=rna2652-protein|Name=rna2652|organism=Nannochloropsis gaditana|type=polypeptide|length=1044bp
MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPR
AGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVH
DEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVEN
KEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEED
EEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNE
EEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGAS
VSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEP
PAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHT
FCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQA
LSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQ
TLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTL
ATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRL
FAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVG
ANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELA
WFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRR
RTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFI
PLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVR
YIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLL
LEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILL
LTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRP
PATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY

mRNA from alignment at CM002459.1:885759..888893-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2652 ID=rna2652|Name=rna2652|organism=Nannochloropsis gaditana|type=mRNA|length=3135bp|location=Sequence derived from alignment at CM002459.1:885759..888893- (Nannochloropsis gaditana)
ATGGCTCCTGAAACGAATCCGGAGCCGGGCCGTACTGAATTGACAAACGG
GACGGAAGCCCGTCGTTCAGAGGGCCATGCCGCCCCATCGTCTCCTGTTC
AGTCCTCCATCAGCAGCTCTCGTGATCCACACCCTGTTCTACGACCACGC
GCAGGTTTTGGAAACGGAATTCCACACGTCTCGCAACGCCTCGTTGCAGG
CATGCCCTCCTTCCCCGGAAGCCCGGTCTCCCCTTCCTTGGTCGTGACAG
GGCATGAGGATTTTCGCGTCCAAGGTCATGACAATAATGCTTTGGTGCAT
GATGAAGTCATGGCACCGTTGTCTCAAGTCGTTCTTCCGTTCCATGGGAC
TCAAGAGAGGGGTCAAGAAGTAGTCTTTTCTTCCCATGCGGCGGGTCATC
CGGTGGCTTCGGAGCACACCCCCGCGCAGGACGATGCTGGGGTTGAGAAC
AAGGAGGATGGAGAGAAGCAGAACAAGAAAGAGGGGGAAGTGCAAACCAG
TAATTGGTCTGGCATACGTAGGGATGCAGGTTCCAGCGAGACGAATGGAA
GGCGAGGTGTGGGGATTGGCGCAGAGGAGGAGGAGGAGGAGGAGGAAGAC
GAGGAGGAGGACGAGGATGACGACGGGGAGGACGAGCAAGACGAAGAAGA
CGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGATGCCAACGAGGCTG
ACGATGAGGAGGAAGACGAGGAGGTGGTAGGGGAGGACGAGGGAAACGAA
GAAGAGGAAGACGAAGCGGATGGGGGAAAAGAGGAGATTGGAAGACGCCA
TGAGCGTGAGAACATTTCGTCCGTCCAGGGGACGAGGGCTGTTGTGCCAG
TGTTCAGAGAGAGACACGGGGGAGGGCGCGGGGCTCTGTCGGGCGCCTCC
GTGTCGCATGCTTTGCCCTTGGCCGGTGGAGTCCTGCGGATGCGGCGGTC
GCGGGGAGTTTCCTCCATCCAAGCGGCTAACGGATCGCGCGTCCGCCCTC
CGTCCGCCGGCTCCGTGCGGGCATCCCCTGCAGGGTCCCGGCTAGAACCA
CCCGCTCCCTTCGCCTCCGCCGGCCCCTCTCCTTCCCCTCGGACGTGCGC
GGAAGTCAGCGGGGAACAAGCCGGCCGCGACGCCTGGGTCTGCCCCGTCT
GTTTGCAGCATTTCGATGAGCCTTGCCGCCTGCCTCGCTGCACCCACACC
TTCTGCAAGACGTGCATCCAAGGCATCATCCGAAACCTCGTGGCCGCCCA
CCACCAGCAACAGCAGCACCAGCAGCTTTCGCCCCCCGCGCCCCATTGCC
CCCTCTGCCGTCTCAAGTTCACTCCCGCCGAGGTTCAACCCGACCAGGCC
CTGTCTCAGGAGATGAGCGCCGCCAGGGTCCGCTGCGGCAATGCCCGGTG
CGAGCGGCTCATGACCCCCCTCGAAAGCAAACGGCACCAGGACGAATGTC
CTTACGGCGTGGCCCCCTGCCCCCACCAACATCACGGCTGTGGCTTTCAG
ACGCTGCGGAGGGACCTCGGTGCCCACCTGAGCATGTGTCCCTACGAGCA
GATCAAGGGCCTTTTCCCCAAGATCCGTCAGAGCAACGAGCACGTCACGG
CCGCCATGCGCGGGTGGGAAAATGCCTTCGTCTCGCAGCAACAAACCCTT
GCCACCCACGCCGCGTCTCTCCGCAACCTGGAACACCGCTCGTCATTCCC
TCTCTCCCGCCACCTCCAGCTCGTCACCCTCCTTCTCTGGGAACCATACC
TGTGGCTTCAACAAGCCGAGCGATGGTCACGTTCCTTCTCCCTGCGGCTT
TTCGCCATGCAGCTCTACGCCTCCCCGCTCGTCCTCATCCTCCTCAAAGT
CGCCGCCCGTAGCAGTCCGGACATGCCAAGGGAGCCGGGGCACGAAAGCC
GCCGGTGGTTTTTCCCTCCGGCGACGCACTACCCCGCCCCCATTGTCGGC
GCCAATTGCTGCCCGTCCTCTCCGTGCCTTGGGCCACCCTCGTCCTCGGC
ATCCTCGCTCTCCTTCCTCACACCATGGCCTGCGGAGAGCGCTAAAGAAG
GCGACGGCCAGCCTCAAGTCTGCAGCCTCGGGATGGCGCCCGAGCTGGCA
TGGTTCGTGCTGATCCTCGTCGTGGCCGTCGTCCTGGTCGAGGGCCTTCA
GGACGCACCCCCTGTCCTCTCCACCGAGCTATGCATCCCATTGCGACCTG
CCTCCTGGAGGGCATTCTTTCCCGGCTTACCTTTCCCGTCCAACCGGCGC
CGCACCTCCTCCTACGACCCCTCCTCCCCGGCACCTCCTTCCGTTCCTCC
CTCCCAAGCCACCCCGCCCGCGCCTCGTTCAGATCGAACCCCCCAGACCC
ACACTGGCACACCCCCTGCGAGCACTGGACCTCACTCGTCACCATTCATT
CCTCTCGTACTGTCCGTTCCGATCCGTTACGGAGAGTGGCTTTTGCAGCT
CGCCACTGCCTGGGCTTGTTACGCTTTCGGAGGAGGGCGGGCTCGGGCAG
ATTTCTCGGACGCGAGTTTCCCATATCTAAGCAGCTTTATCAGTGTCAGA
TATATAGCATTATTCCTGAGCCTGATCCCTGCCATGGCCGTGCAGACCCT
GACCCATCGTTGCAAGTTGGAGAAGCCAATAGTGCAAGGCATGGTTATGG
GTGTATGCATGTACTGGGTGGAGTGGCGGGCTTTGGCAGGCTCCCTTCTC
CTGGAAGAGTTCCTCCATTATGGTCTCATTTATGCGTGTGGACAATGGTT
ACTTGTGGACTCTGCGGAAAGGGAGGGCAGCGTGCGGTGGGATGCCTACG
TGCGACGCTGTATCGAAGAGCCTGGGGCACGGTTTCGTGGAATCCTACTC
CTGACTCTGGCAACGATCATGTTGCTAGTTGGACAGAGTTGGGCACTCGT
GAAAGGAATTTTTTTCCGAACCACCGGTACAATGGTGTCGTTCATGTTCC
GCATGATTCTTGGCCGCTTCATGAAGCAGACCTATCAAATGCCGCGTCCC
CCTGCCACCAGTGCCGCTGTCCGTCTTCTGCAAGAACAAGGGCAATGGCC
TCCGCCTGGTCACTACATGCTCCTCGCCTCGCGAACTTTGTTGGCATTGT
CTGTGATGGGAATCGCTCTCGTGTCCCTGTATTAA

Coding sequence (CDS) from alignment at CM002459.1:885759..888893-

>rna2652 ID=rna2652|Name=rna2652|organism=Nannochloropsis gaditana|type=CDS|length=3135bp|location=Sequence derived from alignment at CM002459.1:885759..888893- (Nannochloropsis gaditana)
ATGGCTCCTGAAACGAATCCGGAGCCGGGCCGTACTGAATTGACAAACGG
GACGGAAGCCCGTCGTTCAGAGGGCCATGCCGCCCCATCGTCTCCTGTTC
AGTCCTCCATCAGCAGCTCTCGTGATCCACACCCTGTTCTACGACCACGC
GCAGGTTTTGGAAACGGAATTCCACACGTCTCGCAACGCCTCGTTGCAGG
CATGCCCTCCTTCCCCGGAAGCCCGGTCTCCCCTTCCTTGGTCGTGACAG
GGCATGAGGATTTTCGCGTCCAAGGTCATGACAATAATGCTTTGGTGCAT
GATGAAGTCATGGCACCGTTGTCTCAAGTCGTTCTTCCGTTCCATGGGAC
TCAAGAGAGGGGTCAAGAAGTAGTCTTTTCTTCCCATGCGGCGGGTCATC
CGGTGGCTTCGGAGCACACCCCCGCGCAGGACGATGCTGGGGTTGAGAAC
AAGGAGGATGGAGAGAAGCAGAACAAGAAAGAGGGGGAAGTGCAAACCAG
TAATTGGTCTGGCATACGTAGGGATGCAGGTTCCAGCGAGACGAATGGAA
GGCGAGGTGTGGGGATTGGCGCAGAGGAGGAGGAGGAGGAGGAGGAAGAC
GAGGAGGAGGACGAGGATGACGACGGGGAGGACGAGCAAGACGAAGAAGA
CGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGATGCCAACGAGGCTG
ACGATGAGGAGGAAGACGAGGAGGTGGTAGGGGAGGACGAGGGAAACGAA
GAAGAGGAAGACGAAGCGGATGGGGGAAAAGAGGAGATTGGAAGACGCCA
TGAGCGTGAGAACATTTCGTCCGTCCAGGGGACGAGGGCTGTTGTGCCAG
TGTTCAGAGAGAGACACGGGGGAGGGCGCGGGGCTCTGTCGGGCGCCTCC
GTGTCGCATGCTTTGCCCTTGGCCGGTGGAGTCCTGCGGATGCGGCGGTC
GCGGGGAGTTTCCTCCATCCAAGCGGCTAACGGATCGCGCGTCCGCCCTC
CGTCCGCCGGCTCCGTGCGGGCATCCCCTGCAGGGTCCCGGCTAGAACCA
CCCGCTCCCTTCGCCTCCGCCGGCCCCTCTCCTTCCCCTCGGACGTGCGC
GGAAGTCAGCGGGGAACAAGCCGGCCGCGACGCCTGGGTCTGCCCCGTCT
GTTTGCAGCATTTCGATGAGCCTTGCCGCCTGCCTCGCTGCACCCACACC
TTCTGCAAGACGTGCATCCAAGGCATCATCCGAAACCTCGTGGCCGCCCA
CCACCAGCAACAGCAGCACCAGCAGCTTTCGCCCCCCGCGCCCCATTGCC
CCCTCTGCCGTCTCAAGTTCACTCCCGCCGAGGTTCAACCCGACCAGGCC
CTGTCTCAGGAGATGAGCGCCGCCAGGGTCCGCTGCGGCAATGCCCGGTG
CGAGCGGCTCATGACCCCCCTCGAAAGCAAACGGCACCAGGACGAATGTC
CTTACGGCGTGGCCCCCTGCCCCCACCAACATCACGGCTGTGGCTTTCAG
ACGCTGCGGAGGGACCTCGGTGCCCACCTGAGCATGTGTCCCTACGAGCA
GATCAAGGGCCTTTTCCCCAAGATCCGTCAGAGCAACGAGCACGTCACGG
CCGCCATGCGCGGGTGGGAAAATGCCTTCGTCTCGCAGCAACAAACCCTT
GCCACCCACGCCGCGTCTCTCCGCAACCTGGAACACCGCTCGTCATTCCC
TCTCTCCCGCCACCTCCAGCTCGTCACCCTCCTTCTCTGGGAACCATACC
TGTGGCTTCAACAAGCCGAGCGATGGTCACGTTCCTTCTCCCTGCGGCTT
TTCGCCATGCAGCTCTACGCCTCCCCGCTCGTCCTCATCCTCCTCAAAGT
CGCCGCCCGTAGCAGTCCGGACATGCCAAGGGAGCCGGGGCACGAAAGCC
GCCGGTGGTTTTTCCCTCCGGCGACGCACTACCCCGCCCCCATTGTCGGC
GCCAATTGCTGCCCGTCCTCTCCGTGCCTTGGGCCACCCTCGTCCTCGGC
ATCCTCGCTCTCCTTCCTCACACCATGGCCTGCGGAGAGCGCTAAAGAAG
GCGACGGCCAGCCTCAAGTCTGCAGCCTCGGGATGGCGCCCGAGCTGGCA
TGGTTCGTGCTGATCCTCGTCGTGGCCGTCGTCCTGGTCGAGGGCCTTCA
GGACGCACCCCCTGTCCTCTCCACCGAGCTATGCATCCCATTGCGACCTG
CCTCCTGGAGGGCATTCTTTCCCGGCTTACCTTTCCCGTCCAACCGGCGC
CGCACCTCCTCCTACGACCCCTCCTCCCCGGCACCTCCTTCCGTTCCTCC
CTCCCAAGCCACCCCGCCCGCGCCTCGTTCAGATCGAACCCCCCAGACCC
ACACTGGCACACCCCCTGCGAGCACTGGACCTCACTCGTCACCATTCATT
CCTCTCGTACTGTCCGTTCCGATCCGTTACGGAGAGTGGCTTTTGCAGCT
CGCCACTGCCTGGGCTTGTTACGCTTTCGGAGGAGGGCGGGCTCGGGCAG
ATTTCTCGGACGCGAGTTTCCCATATCTAAGCAGCTTTATCAGTGTCAGA
TATATAGCATTATTCCTGAGCCTGATCCCTGCCATGGCCGTGCAGACCCT
GACCCATCGTTGCAAGTTGGAGAAGCCAATAGTGCAAGGCATGGTTATGG
GTGTATGCATGTACTGGGTGGAGTGGCGGGCTTTGGCAGGCTCCCTTCTC
CTGGAAGAGTTCCTCCATTATGGTCTCATTTATGCGTGTGGACAATGGTT
ACTTGTGGACTCTGCGGAAAGGGAGGGCAGCGTGCGGTGGGATGCCTACG
TGCGACGCTGTATCGAAGAGCCTGGGGCACGGTTTCGTGGAATCCTACTC
CTGACTCTGGCAACGATCATGTTGCTAGTTGGACAGAGTTGGGCACTCGT
GAAAGGAATTTTTTTCCGAACCACCGGTACAATGGTGTCGTTCATGTTCC
GCATGATTCTTGGCCGCTTCATGAAGCAGACCTATCAAATGCCGCGTCCC
CCTGCCACCAGTGCCGCTGTCCGTCTTCTGCAAGAACAAGGGCAATGGCC
TCCGCCTGGTCACTACATGCTCCTCGCCTCGCGAACTTTGTTGGCATTGT
CTGTGATGGGAATCGCTCTCGTGTCCCTGTATTAA

Synonyms

Publications