EWM28023.1, cds2644 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|585110364|gb|EWM28023.1| (tnf receptor-associated factor 4 [Nannochloropsis gaditana]) HSP 1 Score: 2131.3 bits (5521), Expect = 0.000e+0 Identity = 1044/1044 (100.00%), Postives = 1044/1044 (100.00%), Query Frame = 0 Query: 1 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVRYIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLLLEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILLLTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRPPATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY 1044 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVRYIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLLLEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILLLTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRPPATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY Sbjct: 1 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVRYIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLLLEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILLLTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRPPATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY 1044
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|553196279|ref|XP_005856307.1| (tnf receptor-associated factor 4, partial [Nannochloropsis gaditana CCMP526] >gi|422292746|gb|EKU20048.1| tnf receptor-associated factor 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1659.81 bits (4297), Expect = 0.000e+0 Identity = 818/818 (100.00%), Postives = 818/818 (100.00%), Query Frame = 0 Query: 1 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLA 818 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLA Sbjct: 8 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLA 825
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|299472935|emb|CBN77336.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 150.214 bits (378), Expect = 3.619e-34 Identity = 86/217 (39.63%), Postives = 112/217 (51.61%), Query Frame = 0 Query: 377 DAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSS-FPLSRHLQLVTLLLWEPYLW-LQQAER 591 DAW CP+C FD P P C HTFC C++ ++R AA H+Q++ P P CPLCR FTP VQP + +EM A V C N C PL K+HQ+ECP V C H GC ++ RRDL H+ C YE+IKGL P++ S + + A + E ++Q +A A L + S FP V LLW P W L Q+ R Sbjct: 27 DAWSCPICFMWFDMPVS-PPCQHTFCAGCLKSVVR---AAAHRQRRSGNTGPSGPACPLCREPFTPEVVQPSARIFEEMLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGCEWKGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHAQVHQLEARVMAQNAAVANTRALLAHQRRAGSVFP------AVYALLWRPPNWRLYQSPR 233
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|971506682|dbj|GAQ91521.1| (hypothetical protein KFL_008000020 [Klebsormidium nitens]) HSP 1 Score: 117.087 bits (292), Expect = 1.521e-23 Identity = 80/256 (31.25%), Postives = 119/256 (46.48%), Query Frame = 0 Query: 376 RDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAH--HQQQQHQQLSPPAP---HCPLCRLKF-TPAEVQPDQALSQEMSAARVRCGNARCER-LMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPD 624 +D WVCP+CL+ ++P P C H+FC+TCI L AH H+Q ++ P P CP+CR + V P+ L+ E+ A V+CGN CE + E K+HQ C Y C Q GC ++ +R LGAH C Y+++ IR +NE V + + + A L++L + L + + V L+ P L+ E W SF++ F + P + LLK SPD Sbjct: 17 KDHWVCPLCLEIMEDPHSTP-CRHSFCRTCI-----TLAFAHETHRQMHSPHVATPIPPPKTCPICRADCGSEGGVTPNGGLAAELRGALVKCGNVGCEEGAVRASEWKQHQGVCAYAEVSCSQQPLGCHWRGVRHQLGAHELRCAYKELSAF---IRGTNEKVAQL----AHTVTHLEHQVRLQNALLQDLRRLHHYSLQDYFKFVYLIFCRPDLYETSRELWRHSFNVSWFQAVCFMLP--IFLLKFRLLFSPD 257 The following BLAST results are available for this feature:
BLAST of EWM28023.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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