rna2600, rna2600 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2600
Unique Name	rna2600
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	231
Alignment location	CM002459.1:759689..761784 +

Link to JBrowse

Properties


Property Name	Value
Product	set and mynd domain containing 3
Orig transcript id	gnl\|cribi\|Naga_100120g4.6950.mrna
Orig protein id	gnl\|cribi\|Naga_100120g4.6950
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:759689..761784 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g4	gene2486	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2600	rna2600-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28089.1	cds2592	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:759689..761784+
coding sequence from alignment at CM002459.1:759689..761784+

mRNA sequence

>rna2600 ID=rna2600|Name=rna2600|organism=Nannochloropsis gaditana|type=mRNA|length=231bp
ATGGACTTGCTTTTTATTGTCATTTTGCCTTTAAAGGATGGCTCGTCGAA
AGAAGGACACACCTATGAAGCGTCTGAAACACGTAATTTCCACGGGTTAC
AGTCTTTTCCGTCCGGTGGCATACTACGGCATGATTCCATTTGTCCTGTA
TGTAGGTATGAATGGGGATGCCGCCCCGAGCTGGGTGGACTTGCCACGCT
ACTTGATTGCCGTGCTCTGATGCGACCGTGA

protein sequence of rna2600

>rna2600-protein ID=rna2600-protein|Name=rna2600|organism=Nannochloropsis gaditana|type=polypeptide|length=587bp
MEHDLPGCPVLPPSASNCCRVRNSGEGRGRHVIATRPLPNPGMTFLRDKP
FAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHA
GPECHALVELDAFGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAP
PLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARP
KNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNH
SCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRR
ATLANAYFFSCDCPRCTVTLPKAHKYIECEKDNGQETTDSEDNCVDSSLE
WSLQSIACDTDSCAGAFCCSGSDEEYYCLVCGARESSAALKKKLTVATAL
LENGIRRLETDSEQHIAGRDKDTYTASESALPEVLRGLANLLFATNRPAG
LHVQHWMIYHALLCLSNYLMAPDAGVHPLEREDEERAWLRAACEIWALRS
LWRLCGGLEHSKGSKRILFFPELGSRLTRMEKALKAYAKACGGNKKFEEH
LKYGAWRLPLVTEDAEVTGGGNKTTLESVREILGKDL

mRNA from alignment at CM002459.1:759689..761784+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2600 ID=rna2600|Name=rna2600|organism=Nannochloropsis gaditana|type=mRNA|length=2096bp|location=Sequence derived from alignment at CM002459.1:759689..761784+ (Nannochloropsis gaditana)
CAGGGTGTCGACCAGTACGATGGAACACGATCTCCCAGGGTGTCCGGTAT
TGCCTCCGTCGGCTTCGAACTGTTGCCGCGTGCGGAATTCGGGTGAAGGC
AGGGGCCGACATGTCATTGCCACGAGGCCGCTCCCAAACCCCGGAATGAC
ATTTCTTCGAGACAAGCCCTTTGCCGCCGTAGTGGCGGACCTCTATCGTA
ATACATGTTGTGCAGCCTGTCTTCATGTCTGTACCGAGCAGATCTTCGTG
TGCGGAGCTTGCAAAGTGACCTTCTATTGTTCGTCTGCTTGCGTCGCACG
TGACAGTATGATTCATGCTGGACCTGAGTGCCATGCATTGGTGGAACTGG
ATGCGTTCGGTGTGGAAGGAGACTCACAAGCGATGCGCTTGGCATTACGG
TTGGTAAGTGCATATTATTTGTTACGGCATAAGTTTCATATtaagatgag
ggagaagcaaCGAGCTTCACGGATGCAGAAGAATCTACTCACTCCCATca
actttctttttcttcttcagcgcATTATCTCATCAATAAATTTACACGAT
GCATATGATTTTCTCCTATACAGGCCTGTCTGGCTGCGAAAGAAGAAGCC
CGCCATGACAACGGTAAAGGAGGCTCTTGCACAGCTCCTCCTTTAAATGC
ATTTCATACATCAACCTTTATCAGCTCTTTGGAAGACCACTTTGATGATA
TAAAAGATGCTTCGATCAAGAATAGCATTCAGACTGTAGCTGATGCATTA
TCTAGCTTTCTGGAGAGCGGCATAAAGGCAGCGAGGCCAAAAAATGAGat
ccccgctcctccgccgagaCCCCGTTTCGACAtggcccgcctgctccttg
cCATCCAGTGCAACGCCCATAGCATCCGAGACAGTTATGAGAGCAACCTA
GGCCTAGGTGTCTACCCTATTGCCTCTATGCTCAACCACTCTTGTCAACC
CAACGCCTACCACGTATTCCGCTTCCatcagggggaggggccgccTACGT
TGCTCTTTAAGACTTTGCGAGCCGTTGGAACCGGCCAGGAGCTGGTGTAT
AGCTACACCGACCTCATGCGCCCTGGACAACTTCGGCGGGCAACCCTTGC
TAATGCCTATTTTTTCTCCTGTGATTGTCCGAGGTGCACTGTCACACTGC
CAAAAGCGCATAAATATATCGAATGTGAAAAAGACAATGGACAAGAAACA
ACGGACAGCGAGGATAACTGCGTCGATAGTTCCCTGGAATGGTCGCTGCA
GTCGATTGCATGCGATACAGACAGTTGCGCAGGGGCTTTTTGTTGCTCGG
GTTCTGATGAGGAGTATTATTGCCTAGTGTGTGGCGCGAGGGAATCTTCG
GCAGCTCTTAAAAAAAAACTGACAGTTGCTACTGCGTTGTTGGAAAATGG
CATTCGCAGATTGGAAACCGACAGTGAGCAGCACATAGCAGGACGGGATA
AAGATACGTATACAGCGTCGGAAAGTGCGCTTCCTGAGGTTTTGCGAGGC
TTGGCCAATCTACTGTTCGCCACCAACCGTCCTGCCGGACTGCACGTCCA
GCATTGGATGATATATCATGCTTTGCTATGTTTAAGCAATTATCTCATGG
CTCCTGATGCAGGAGTTCATCCTTTAGAGCgagaggacgaagagcggGCT
TGGCTCAGAGCGGCATGCGAGATATGGGCCCTTCGCAGTCTCTGGCGTTT
GTGCGGCGGCCTGGAACACAGCAAGGGCAGTAAAAGGATATTATTTTTTC
CAGAGCTAGGTTCTCGCCTGACACGGATGGAAAAGGCACTGAAAGCGTAC
GCAAAGGCTTGCGGTGGCAATAAAAAATTTGAAGAGCATTTAAAATATGG
GGCGTGGAGGTTGCCGCTGGTAACTGAGGATGCGGAggtgacgggggggg
gaaataagACAACTTTGGAGAGCGTCAGAGAGATCCTGGGGAAAGATTTA
TAACGAAAGGTATACATAACGAGCATAAATACTTGTGAACCTTAGAAAGG
AAACAAGAGACTGGAAAGATTGCACCGATGGACGCCGTAAGGCCTCTGGG
CTACAGGGTCCCACGCAGGATACCCGGTTATTCCCGGCGACGCGCG

Coding sequence (CDS) from alignment at CM002459.1:759689..761784+

>rna2600 ID=rna2600|Name=rna2600|organism=Nannochloropsis gaditana|type=CDS|length=3528bp|location=Sequence derived from alignment at CM002459.1:759689..761784+ (Nannochloropsis gaditana)
ATGGAACACGATCTCCCAGGGTGTCCGGTATTGCCTCCGTCGGCTTCGAA
CTGTTGCCGCGTGCGGAATTCGGGTGAAGGCAGGGGCCGACATGTCATTG
CCACGAGGCCGCTCCCAAACCCCGGAATGACATTTCTTCGAGACAAGCCC
TTTGCCGCCGTAGTGGCGGACCTCTATCGTAATACATGTTGTGCAGCCTG
TCTTCATGTCTGTACCGAGCAGATCTTCGTGTGCGGAGCTTGCAAAGTGA
CCTTCTATTGTTCGTCTGCTTGCGTCGCACGTGACAGTATGATTCATGCT
GGACCTGAGTGCCATGCATTGGTGGAACTGGATGCGTTCGGTGTGGAAGG
AGACTCACAAGCGATGCGCTTGGCATTACGGTTGGCCTGTCTGGCTGCGA
AAGAAGAAGCCCGCCATGACAACGGTAAAGGAGGCTCTTGCACAGCTCCT
CCTTTAAATGCATTTCATACATCAACCTTTATCAGCTCTTTGGAAGACCA
CTTTGATGATATAAAAGATGCTTCGATCAAGAATAGCATTCAGACTGTAG
CTGATGCATTATCTAGCTTTCTGGAGAGCGGCATAAAGGCAGCGAGGCCA
AAAAATGAGatccccgctcctccgccgagaCCCCGTTTCGACAtggcccg
cctgctccttgcCATCCAGTGCAACGCCCATAGCATCCGAGACAGTTATG
AGAGCAACCTAGGCCTAGGTGTCTACCCTATTGCCTCTATGCTCAACCAC
TCTTGTCAACCCAACGCCTACCACGTATTCCGCTTCCatcagggggaggg
gccgccTACGTTGCTCTTTAAGACTTTGCGAGCCGTTGGAACCGGCCAGG
AGCTGGTGTATAGCTACACCGACCTCATGCGCCCTGGACAACTTCGGCGG
GCAACCCTTGCTAATGCCTATTTTTTCTCCTGTGATTGTCCGAGGTGCAC
TGTCACACTGCCAAAAGCGCATAAATATATCGAATGTGAAAAAGACAATG
GACAAGAAACAACGGACAGCGAGGATAACTGCGTCGATAGTTCCCTGGAA
TGGTCGCTGCAGTCGATTGCATGCGATACAGACAGTTGCGCAGGGGCTTT
TTGTTGCTCGGGTTCTGATGAGGAGTATTATTGCCTAGTGTGTGGCGCGA
GGGAATCTTCGGCAGCTCTTAAAAAAAAACTGACAGTTGCTACTGCGTTG
TTGGAAAATGGCATTCGCAGATTGGAAACCGACAGTGAGCAGCACATAGC
AGGACGGGATAAAGATACGTATACAGCGTCGGAAAGTGCGCTTCCTGAGG
TTTTGCGAGGCTTGGCCAATCTACTGTTCGCCACCAACCGTCCTGCCGGA
CTGCACGTCCAGCATTGGATGATATATCATGCTTTGCTATGTTTAAGCAA
TTATCTCATGGCTCCTGATGCAGGAGTTCATCCTTTAGAGCgagaggacg
aagagcggGCTTGGCTCAGAGCGGCATGCGAGATATGGGCCCTTCGCAGT
CTCTGGCGTTTGTGCGGCGGCCTGGAACACAGCAAGGGCAGTAAAAGGAT
ATTATTTTTTCCAGAGCTAGGTTCTCGCCTGACACGGATGGAAAAGGCAC
TGAAAGCGTACGCAAAGGCTTGCGGTGGCAATAAAAAATTTGAAGAGCAT
TTAAAATATGGGGCGTGGAGGTTGCCGCTGGTAACTGAGGATGCGGAggt
gacgggggggggaaataagACAACTTTGGAGAGCGTCAGAGAGATCCTGG
GGAAAGATTTATAAATGGAACACGATCTCCCAGGGTGTCCGGTATTGCCT
CCGTCGGCTTCGAACTGTTGCCGCGTGCGGAATTCGGGTGAAGGCAGGGG
CCGACATGTCATTGCCACGAGGCCGCTCCCAAACCCCGGAATGACATTTC
TTCGAGACAAGCCCTTTGCCGCCGTAGTGGCGGACCTCTATCGTAATACA
TGTTGTGCAGCCTGTCTTCATGTCTGTACCGAGCAGATCTTCGTGTGCGG
AGCTTGCAAAGTGACCTTCTATTGTTCGTCTGCTTGCGTCGCACGTGACA
GTATGATTCATGCTGGACCTGAGTGCCATGCATTGGTGGAACTGGATGCG
TTCGGTGTGGAAGGAGACTCACAAGCGATGCGCTTGGCATTACGGTTGGC
CTGTCTGGCTGCGAAAGAAGAAGCCCGCCATGACAACGGTAAAGGAGGCT
CTTGCACAGCTCCTCCTTTAAATGCATTTCATACATCAACCTTTATCAGC
TCTTTGGAAGACCACTTTGATGATATAAAAGATGCTTCGATCAAGAATAG
CATTCAGACTGTAGCTGATGCATTATCTAGCTTTCTGGAGAGCGGCATAA
AGGCAGCGAGGCCAAAAAATGAGatccccgctcctccgccgagaCCCCGT
TTCGACAtggcccgcctgctccttgcCATCCAGTGCAACGCCCATAGCAT
CCGAGACAGTTATGAGAGCAACCTAGGCCTAGGTGTCTACCCTATTGCCT
CTATGCTCAACCACTCTTGTCAACCCAACGCCTACCACGTATTCCGCTTC
CatcagggggaggggccgccTACGTTGCTCTTTAAGACTTTGCGAGCCGT
TGGAACCGGCCAGGAGCTGGTGTATAGCTACACCGACCTCATGCGCCCTG
GACAACTTCGGCGGGCAACCCTTGCTAATGCCTATTTTTTCTCCTGTGAT
TGTCCGAGGTGCACTGTCACACTGCCAAAAGCGCATAAATATATCGAATG
TGAAAAAGACAATGGACAAGAAACAACGGACAGCGAGGATAACTGCGTCG
ATAGTTCCCTGGAATGGTCGCTGCAGTCGATTGCATGCGATACAGACAGT
TGCGCAGGGGCTTTTTGTTGCTCGGGTTCTGATGAGGAGTATTATTGCCT
AGTGTGTGGCGCGAGGGAATCTTCGGCAGCTCTTAAAAAAAAACTGACAG
TTGCTACTGCGTTGTTGGAAAATGGCATTCGCAGATTGGAAACCGACAGT
GAGCAGCACATAGCAGGACGGGATAAAGATACGTATACAGCGTCGGAAAG
TGCGCTTCCTGAGGTTTTGCGAGGCTTGGCCAATCTACTGTTCGCCACCA
ACCGTCCTGCCGGACTGCACGTCCAGCATTGGATGATATATCATGCTTTG
CTATGTTTAAGCAATTATCTCATGGCTCCTGATGCAGGAGTTCATCCTTT
AGAGCgagaggacgaagagcggGCTTGGCTCAGAGCGGCATGCGAGATAT
GGGCCCTTCGCAGTCTCTGGCGTTTGTGCGGCGGCCTGGAACACAGCAAG
GGCAGTAAAAGGATATTATTTTTTCCAGAGCTAGGTTCTCGCCTGACACG
GATGGAAAAGGCACTGAAAGCGTACGCAAAGGCTTGCGGTGGCAATAAAA
AATTTGAAGAGCATTTAAAATATGGGGCGTGGAGGTTGCCGCTGGTAACT
GAGGATGCGGAggtgacgggggggggaaataagACAACTTTGGAGAGCGT
CAGAGAGATCCTGGGGAAAGATTTATAA

Synonyms

Publications