EWM28089.1, cds2592 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|585110432|gb|EWM28089.1| (set and mynd domain containing 3 [Nannochloropsis gaditana]) HSP 1 Score: 1216.06 bits (3145), Expect = 0.000e+0 Identity = 587/587 (100.00%), Postives = 587/587 (100.00%), Query Frame = 0
Query: 1 MEHDLPGCPVLPPSASNCCRVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDAFGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHKYIECEKDNGQETTDSEDNCVDSSLEWSLQSIACDTDSCAGAFCCSGSDEEYYCLVCGARESSAALKKKLTVATALLENGIRRLETDSEQHIAGRDKDTYTASESALPEVLRGLANLLFATNRPAGLHVQHWMIYHALLCLSNYLMAPDAGVHPLEREDEERAWLRAACEIWALRSLWRLCGGLEHSKGSKRILFFPELGSRLTRMEKALKAYAKACGGNKKFEEHLKYGAWRLPLVTEDAEVTGGGNKTTLESVREILGKDL 587
MEHDLPGCPVLPPSASNCCRVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDAFGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHKYIECEKDNGQETTDSEDNCVDSSLEWSLQSIACDTDSCAGAFCCSGSDEEYYCLVCGARESSAALKKKLTVATALLENGIRRLETDSEQHIAGRDKDTYTASESALPEVLRGLANLLFATNRPAGLHVQHWMIYHALLCLSNYLMAPDAGVHPLEREDEERAWLRAACEIWALRSLWRLCGGLEHSKGSKRILFFPELGSRLTRMEKALKAYAKACGGNKKFEEHLKYGAWRLPLVTEDAEVTGGGNKTTLESVREILGKDL
Sbjct: 1 MEHDLPGCPVLPPSASNCCRVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDAFGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHKYIECEKDNGQETTDSEDNCVDSSLEWSLQSIACDTDSCAGAFCCSGSDEEYYCLVCGARESSAALKKKLTVATALLENGIRRLETDSEQHIAGRDKDTYTASESALPEVLRGLANLLFATNRPAGLHVQHWMIYHALLCLSNYLMAPDAGVHPLEREDEERAWLRAACEIWALRSLWRLCGGLEHSKGSKRILFFPELGSRLTRMEKALKAYAKACGGNKKFEEHLKYGAWRLPLVTEDAEVTGGGNKTTLESVREILGKDL 587
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|1095967664|ref|XP_018777606.1| (PREDICTED: histone-lysine N-methyltransferase SMYD3 [Serinus canaria]) HSP 1 Score: 115.931 bits (289), Expect = 3.321e-24 Identity = 94/355 (26.48%), Postives = 155/355 (43.66%), Query Frame = 0
Query: 9 PVLPPSASNCCRVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDA-FGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHKYIECEKDNGQETTD--SEDNCVDSSLEWSLQSIACDT 360
P P +S+ R + G+G G + +R PG D PFA V++ + C CL E + C CKV YC +C +++ + EC L ++ F + A R+ +L + C + L +F S S+ E +++KD ++ +A L +L++ I+ ++++P P D ++ + CN +I + ++G+G+YP S+LNHSC PN VF Q LL ++R + G+EL SY + + P + R+ L Y F CDCP C A K + E+ +E D +E S EW + C
Sbjct: 6 PFHPNPSSDSVRFHSPGKGSG---LRSRRSVRPGELLYHDAPFAYVLSKQQLGSVCERCLRR-NENLLRCSQCKVAKYCGRSC-QKEAWLDHKQECKCLKSIEPNFPPDSVRLAGRIVFKLL-------------RQSVCPSERLYSF--SNLQSNAERLSEEMKDG-----LRHLAQTLQLYLKTEIQD---ESQLP-----PAIDFFQIFTKVTCNCFTISNGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGFQ------LLLHSVREIQIGEELTISYVESLMPTRERQKQLLRQYCFECDCPLCQNQEKDAEK-LAGEEHAWKEVKDAVNEVRYPKSKEEWKHVLVRCQN 320
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|929490532|ref|XP_014124457.1| (PREDICTED: histone-lysine N-methyltransferase SMYD3 isoform X3 [Zonotrichia albicollis]) HSP 1 Score: 114.775 bits (286), Expect = 3.923e-24 Identity = 82/298 (27.52%), Postives = 136/298 (45.64%), Query Frame = 0
Query: 20 RVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDA-FGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRC 316
R + G+G G + +R PG RD PFA V++ + C CL E + C CKV YC C +++ + EC L ++ F + A R+ +L + C + L F S S+ E +++KD ++ +A L +L++ I+ ++++P P D ++ + CN+ +I + ++G+G+YP S+LNHSC PN VF +Q LL ++R + G+EL SY + + P + R+ L Y F CDCP C
Sbjct: 8 RFHSPGKGNG---LRSRRSMRPGELLYRDVPFAYVLSKQQLGSVCERCLRR-NENLHRCSQCKVAKYCGRTC-QKEAWLDHKQECKCLKSIEPNFPPDSVRLAGRIVFKLL-------------RQSVCPSEKLYCF--SDLQSNTEQLSEEMKDG-----LRHLAQTLQLYLKTEIQD---ESQLP-----PAIDFFQIFTKVTCNSFTISNGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGYQ------LLLHSVREIQIGEELTISYVESLVPTRERQKQLMRQYCFECDCPLC 266
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|831771218|ref|XP_012753235.1| (hypothetical protein SAMD00019534_066690, partial [Acytostelium subglobosum LB1] >gi|735853867|dbj|GAM23494.1| hypothetical protein SAMD00019534_066690, partial [Acytostelium subglobosum LB1]) HSP 1 Score: 113.62 bits (283), Expect = 1.158e-23 Identity = 101/361 (27.98%), Postives = 161/361 (44.60%), Query Frame = 0
Query: 26 EGRGRHVIATRPLPNPGMTFLRDKPFAAVVA--DLYRNTCCAACL-HVCTE----QIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDAFGV-EGDSQAM-RLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVAD--ALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYE----SNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHKYIECEKDNGQETTDSEDNCVDSSLEWSLQSIACDTDSCAGAFCCSG 371
EGRGR+++A++ + G L ++PFA + D C CL +CT Q+ C C+ T+YCS C D+ +H+ EC L + + + D ++M +L LR+ + RH AP +F D+ + D + S +AD ++ FLE G+ + + D+ RL+ ++CN H I + E S++G +Y +AS NHSCQPN V R +G+G L L + G EL Y+Y L + R+ L ++YFF+C CP C V + + K G+ + + S + L+ CD D C G +G
Sbjct: 13 EGRGRYLVASKDIVR-GEIVLYEQPFAHTINYRDALARQLCHRCLRQLCTSSQASQLDGCNTCQTTYYCSIECRELDTPMHS-IECQQYQRLASTSMFDNDCKSMLKLCLRVLVM------RH--------LAPTSESF----------DNVLQLCDNRHQFSASRMADLGKVARFLEKGLNMGTAATKTEVLRGLTQMDLVRLMCVLECNTHEIGLTLEPYKYSSVGSALYIMASYFNHSCQPNVCRVNR--EGDGG-ALSMIALADIPAGTELSYNYIQLSLSNEERKTKLFDSYFFNCVCPGCAVVSSGSAGSTKSSK--GRRSAKGGEPVQSKSQQAYLKRYLCDRDGCNGVRISNG 342
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|542162217|ref|XP_005489778.1| (PREDICTED: histone-lysine N-methyltransferase SMYD3 isoform X1 [Zonotrichia albicollis]) HSP 1 Score: 114.005 bits (284), Expect = 1.387e-23 Identity = 82/298 (27.52%), Postives = 136/298 (45.64%), Query Frame = 0
Query: 20 RVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDA-FGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRC 316
R + G+G G + +R PG RD PFA V++ + C CL E + C CKV YC C +++ + EC L ++ F + A R+ +L + C + L F S S+ E +++KD ++ +A L +L++ I+ ++++P P D ++ + CN+ +I + ++G+G+YP S+LNHSC PN VF +Q LL ++R + G+EL SY + + P + R+ L Y F CDCP C
Sbjct: 8 RFHSPGKGNG---LRSRRSMRPGELLYRDVPFAYVLSKQQLGSVCERCLRR-NENLHRCSQCKVAKYCGRTC-QKEAWLDHKQECKCLKSIEPNFPPDSVRLAGRIVFKLL-------------RQSVCPSEKLYCF--SDLQSNTEQLSEEMKDG-----LRHLAQTLQLYLKTEIQD---ESQLP-----PAIDFFQIFTKVTCNSFTISNGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGYQ------LLLHSVREIQIGEELTISYVESLVPTRERQKQLMRQYCFECDCPLC 266
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|823458013|ref|XP_012427865.1| (PREDICTED: histone-lysine N-methyltransferase SMYD3 [Taeniopygia guttata]) HSP 1 Score: 114.005 bits (284), Expect = 1.720e-23 Identity = 85/307 (27.69%), Postives = 138/307 (44.95%), Query Frame = 0
Query: 20 RVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDA-FGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHK 325
R + G+G G + +R PG RD PFA V+ T C CL E + C CKV YC +C +++ + EC L ++ F + A R+ +L + C + L +F S S+ E +++KD ++ +A L +L++ I+ ++++P P D ++ + CN +I + ++G+G+YP S+LNHSC PN VF +Q LL ++R + G+EL SY + + P + R+ L Y F CDCP C A K
Sbjct: 8 RFHSPGKGSG---LRSRRSVRPGELLYRDVPFAYVLTKQQLGTVCERCLRR-NENLHRCSQCKVAKYCGRSC-QKEAWLDHKQECKCLKSIEPNFPPDSVRLAGRIVFKLL-------------RQSVCPSERLYSF--SDLHSNSEQLNEEMKDG-----LRHLAQTLQLYLKTEIQD---ESQLP-----PAIDFFQIFTKVTCNCFTISNGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGYQ------LLLHSVRDIQIGEELTISYVESLMPTRERQKQLMRQYCFECDCPLCQNQEKDAEK 275
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|950979648|ref|XP_014455496.1| (PREDICTED: histone-lysine N-methyltransferase SMYD3 isoform X3 [Alligator mississippiensis]) HSP 1 Score: 113.62 bits (283), Expect = 2.094e-23 Identity = 92/336 (27.38%), Postives = 147/336 (43.75%), Query Frame = 0
Query: 27 GRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDAFGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHKYIECEKDNGQETTDSEDNC--VDSSLEWSLQSIACDT 360
GRG + A R L PG R +PFAA+ A R C CL E + C CK+ YC C D H EC L ++ + DS +RL R+ +E +A P +T ++ L+ + + + + +K + +A L +L++ ++ A + P D+ ++ + CN +I + ++G+G+YP S+LNHSC PN VF +Q LL ++R + G+EL SY + + P R+ L Y F CDC +C T K + E+ E+ D+ + S EW + C T
Sbjct: 13 GRGCGLRARRRL-QPGELLYRAQPFAAIAASPQRGRLCERCLRR-NEDLLRCSQCKIARYCGKRCQKEDWQDHKR-ECKCLKSIEP-NIPPDS--VRLVGRIVFKLLRE------------SACPSEKLYT---LADLQSNIEKLSE-EMKEGLGHLAQTLQLYLKAEVQDASQLS--------PAIDIFQIFAKVTCNCFTISNGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGYQ------LLLHSVREIQIGEELTISYIESLMPSNERQKQLKRQYCFECDCLQCQ-TQNKDADMLAGEEQVWNESRDAVTKVKNLKSPEEWEQVLVTCQT 311
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|1150692135|ref|XP_020257026.1| (histone-lysine N-methyltransferase ASHR1 isoform X1 [Asparagus officinalis] >gi|1141993981|gb|ONK75200.1| uncharacterized protein A4U43_C03F14400 [Asparagus officinalis]) HSP 1 Score: 114.775 bits (286), Expect = 2.739e-23 Identity = 81/291 (27.84%), Postives = 128/291 (43.99%), Query Frame = 0
Query: 27 GRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDAFGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCT 317
G+GR ++ T+ PG + +P+A+ + C C + I C AC+V +YC + C + +H EC AL L + + +RL +RL A +E + P + +L H DIK+ + L + + + +K P EI F + CNAH+I DS LG G+YP+ S++NHSC PN VF EG ++ + L + G+E++ SY + + R+ L YFF+C+CPRCT
Sbjct: 96 GKGRGLVTTKDF-TPGDVIICQEPYASCPNRSSGGSICDGCF--VSNNIRKCSACRVAWYCGNKCQKSEWKLHQ-LECQALAALTEDRKKMLTPTIRLMVRLILKAKLQEGK----------VIPTTPMDNYGLVDALVSHMSDIKEEQL---------VLYAQMANLVKLVLPHMEINLKEITANFS------KLACNAHTICDSELRPLGTGLYPVISIINHSCIPNCVLVF-----EGRLAII-RALEPIAKGKEILISYIETAATTKTRQNDLKKQYFFTCNCPRCT 351
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|1121900848|ref|XP_019405305.1| (PREDICTED: histone-lysine N-methyltransferase SMYD3 [Crocodylus porosus]) HSP 1 Score: 112.849 bits (281), Expect = 3.809e-23 Identity = 82/290 (28.28%), Postives = 132/290 (45.52%), Query Frame = 0
Query: 27 GRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDAFGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRC 316
GRG + A R L PG R +PFAA+ A R C CL E + C CK+ YC C D H EC L ++ + DS +RL R+ +E +A P +T ++ L+ + + + + +K + +A L +L++ ++ A + P D+ ++ + CN +I + ++G+G+YP S+LNHSC PN VF +Q LL +++R + G+EL SY + + P R+ L Y F CDC +C
Sbjct: 13 GRGCGLRARREL-RPGELLYRAQPFAAIAAGPQRGRLCERCLRR-NENLLRCSQCKIARYCGKHCQKEDWQDHKR-ECKCLKSVEP-NIPPDS--VRLVGRIVFKLLRE------------SACPSEKLYT---LADLQSNIEKLSE-EMKEGLGHLAQTLQLYLKAEVQDASQLS--------PAIDIFQIFAKVTCNCFTISNGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGYQ------LLLRSVREIQIGEELTISYIESLMPSNERQKQLKRQYCFECDCLQC 266
BLAST of EWM28089.1 vs. NCBI_GenBank
Match: gi|959060954|ref|XP_014733555.1| (PREDICTED: histone-lysine N-methyltransferase SMYD3 [Sturnus vulgaris]) HSP 1 Score: 112.849 bits (281), Expect = 4.383e-23 Identity = 84/307 (27.36%), Postives = 138/307 (44.95%), Query Frame = 0
Query: 20 RVRNSGEGRGRHVIATRPLPNPGMTFLRDKPFAAVVADLYRNTCCAACLHVCTEQIFVCGACKVTFYCSSACVARDSMIHAGPECHALVELDA-FGVEGDSQAMRLALRLACLAAKEEARHDNGKGGSCTAPPLNAFHTSTFISSLEDHFDDIKDASIKNSIQTVADALSSFLESGIKAARPKNEIPAPPPRPRFDMARLLLAIQCNAHSIRDSYESNLGLGVYPIASMLNHSCQPNAYHVFRFHQGEGPPTLLFKTLRAVGTGQELVYSYTDLMRPGQLRRATLANAYFFSCDCPRCTVTLPKAHK 325
R + G+G G + +R PG RD PFA V+ + C CL ++ C CKV YC +C +++ + EC L ++ F + A R+ +L + C + L +F S S+ E +++KD ++ +A L +L++ I R ++++P P D ++ + CN +I + ++G+G+YP S+LNHSC PN VF +Q LL ++R + G+EL SY + + P + R+ L Y F CDCP C A K
Sbjct: 8 RFHSPGKGSG---LRSRRRVRPGELLYRDVPFAYVLTKEQLGSVCERCLRR-NGKLHRCSQCKVAKYCGRSC-QKEAWLDHKQECRCLKSIEPNFPPDSVRLAGRIVFKLL-------------RQSVCPSERLYSF--SDLQSNAERLSEEMKDG-----LRHLAQTLQLYLKTEI---RDESQLP-----PAIDFFQIFTKVTCNCFTISNGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGYQ------LLLHSVREIQIGEELTISYVESLMPTRERQKQLMRQYCFECDCPLCQNQEKDAEK 275 The following BLAST results are available for this feature:
BLAST of EWM28089.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|