rna2546, rna2546 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2546
Unique Name	rna2546
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3044
Alignment location	CM002459.1:627308..629870 +

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Properties


Property Name	Value
Product	fusca protein fus6
Orig transcript id	gnl\|cribi\|Naga_100036g40.2542.mrna
Orig protein id	gnl\|cribi\|Naga_100036g40.2542
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:627308..629870 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g40	gene2433	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2546	rna2546-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28122.1	cds2538	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:627308..629870+
coding sequence from alignment at CM002459.1:627308..629870+

mRNA sequence

>rna2546 ID=rna2546|Name=rna2546|organism=Nannochloropsis gaditana|type=mRNA|length=3044bp
CGTTCCCAACAACCGCCTTGATCTTCGTCATGACATCTCCCCATTGCTCT
TGGTGATTTTGCTGCAACACGACGCCACTTGGCCCCGCCGGGCCCGTTCC
CCCCATGGAGACTCCCTGCTCGAAGACGGTGAGCATGCACGACCGGTCTC
CAGGCGCTTTCATGCAAAAATCAGCCGCCATCTTCGTGTAAATTTTGACG
TACATGTCGTGGGTATTGTTTTGAGTCCCCAAAGGCACATACATGAGAAG
CCACTCCTCCTGCTTCTCTGTGCGCGCCTCCACCCACGCCTTAACCTTTG
CTTTCACGGCGCTCTTGTAAGCATCTGAGGTCTCACACACAACCAAGTTG
AGATGCGCATAAGGTGCGCGGTAATCATTGGGACGATCATTAGCCAGCTT
CCGAAAAACAGGGTGATCGTGGGCCAGCGCCTGTACCGGCAGAGTGGAAA
TCGTCACCAAAGTGCTCCCCGTGGTGCCTAGAGGGGTAGGTGTCCGCCAT
GCTATGTCCCGCAAGGGCAGCTGAGCTTTGAAGTATCTTTCCAAAAATTG
CCAGACTTGCCCCAGCTCATCGTAGTAAGCCAAAGCACACACAGATGCAA
GTGAATCCTCGGCAGCGTCGGGAGTGCGAGGAGCGGAGGGGCGTGCGAGT
GAGGAGGGCAGGCCAGACAGTGTGGTGGGAGGAGGCCGCGAGGGCGGTAT
ATCCATGGCGGCACGCCCAAAGGGTCAGGAACGGCGTTCTAGAATATGAT
GGGAAGATAGTCAAAGCTTGTTGGTGTACAGGGCGGAGCAAGGAGGGTTG
CCCGTCGTGAGAGGTACAGTGCCTTAATCGCTCGAACTTCCACTTGGAGG
GGGCGATGGGAAGGGAGAGCGATGATTGCGATCGTATTCCACCCTGGGAG
AGACGTCGTCGAACACCGCACACCTGGTCGCGAGCCATAATTGTCACTTT
CATTACTCTACTATTTACAACGGGAAGTGGATGGACTCGGTCGCCGTCGG
TCCTATTTTGGGCCGCTGTGGTTTTTGCGTAAGGACGAGCGGAAACTCCT
TCGAAACCCTCCCTCGAGATGTGTGCGTGCGGTCACCTCAATGGTGTAAA
TGTTTGGACCAGCTTGAAGCCACCTATGCATGCGCTATAGCAGGCACTAT
TTCGAGCACGTTTCCCTCGCTTTTTTTGGGTCTGCAGATGGATGACCTCA
CCGTGTTCGTCCTTTGCCGCACAGGATGCAAGCCGTACTGTCGACCGCGG
AGGAGGCTGGGATGGATGTGGACGCGCATATGGATGGTCAAGCGGGGGGG
GGCGCGAAGGACGACACATCCAATTTGACTGGTGCCAACGCTGAGAGCGG
AAGCGGTGCCAACGATGATATTGACGCGCCTAATTTTGACATCGACACGT
ATGCTGCCCGGTATGCTGGCTATACTAAGCTTCGGCGCTTACTTTTCATC
GCGCAGCATTGCAAAAGCCGCGAACTCGACGCGTACCGTCTGGCCCTGGA
CGCCCTCACACAGCCGCGGTCCCTCAATATTCAGCTCTACCGGAAAGTGA
TGGGCCTGGTGGCGGGGCGCCTTGGCCCAGCCTATTCTCTTGACGCCACG
TGGGCGGAGGAAATCGACAAACGGGCGGCCATGCAAAAGGAGCGGCTGGA
GAGCGACCTGCAAACCTCCCGGACGGGCATGGCCAAGGAGAGCATCCGCC
TGGGCTATCAGGACCTAGGCGAGTTCCACTACGCGCGGGGCGACCTCGAC
AACGCGCTCAAGAACTTCGTCCGGACACGCGACTACTGCTCCATCGCGCG
GCATAATGTGGAGATGTGCTTGAACGTGATCAAGGTCTCGGTGGGGCTAG
ACAGCTTCGCGCACGTCAGCACCTACGTCTCAAAAGCCGAGCACGCCACG
GGTATGAACGACCCGAAGGTGCGACACAAACTGAAAGCGGCCGCCGGTCT
CGCTCAATTGTCGCAGCATAACTACGATTCCGCAGCTCGCAAGTTCCTTG
ACTGTGGACCCTCCGGCCTAACTAGAGGCACCCCCCAAGACCCCGGGCCC
GCGTCTTTCGCCCACGTCCTGGCCCCCGAAGACGTGGCCACGTACGGAGG
CCTCTGCGCGCTGGCCTCCCTGGACCGGCCGGAGTTGAAGCGCTCCCTCC
TGGAAAACACGACGTTCAAGGGCCTTCTGGACCTCGTGCCCATGGTGCGG
GAGCTCATCTACGACTTTTGCAGGTCGCGCTACGGAGCTTGCCTCGGCGC
CCTGGCCGCTCTTAAGCCCGAGCTCCTGCTGGATGTCCATCTCCATCGAC
ACGTGGAGTCGCTGTACCAGCGCATCCGAGAGCGGTGCCTCCTTCAATAC
TTCATTCCCTACCTGTCCGTGGACCTGGGGTCCATGGCGAACACCTTCGA
CACCCCCCTACCCCGTTTGGAGAAGGAGATAGCAGGGCTCATTGTGACGA
ATCGAATGCCTGCACGCATCGACAGCCAGCGGAAAACCCTCCATCGTCGA
CAAGTGGACCCGCGGGAGGCAGGCTACAAGAAGGTCTTCAGCATGGGCCA
GGAGTTTCTGCGGGAGATGAGGGCGATGCTGTTCCGCATGAGCTTGCTGG
AACACTCCGTGTTTGTAGAAGCAGAGACACGCGGAGGTGCTGGTGGAGGA
GGCGATGCAAGAAGTGGTGGTCGAGCAGGCACCTTGGGGAGCCCGCACCC
CTCACAGGGACGGGCGGCCCGTGGTCAGGGGGCGGGCGGGGGGACAAGTC
AAGCGCGTGGCGGGGACGCGGTGCTGGAGGGGGAGAGCTCGCCGGAGGAG
GATACCGACATGGGCGAGGACTTCGGCTCGGCCAACCAACAGGACCCTGA
CCTCGAGGCTACGCTTACAGGAGAGGGCTGATGTTTACTAATGAGTGAAT
TTTTATCGGCGCGTGAAAAGCATCGATGCATGAGGAAAGCGAATGCACAG
GTACACAGTCGATGCGATCGTAGCGAGCCTGCCTGATTCAAAACAATACA
AACAAAGCAAGAGCTGCGACGGGAGGCCATTACCTCTTGAGTTT

protein sequence of rna2546

>rna2546-protein ID=rna2546-protein|Name=rna2546|organism=Nannochloropsis gaditana|type=polypeptide|length=539bp
MTLFIQDLLLKYMLLQKALPAFSSISHASKAHLLFWIYVYTADIDTYAAR
YAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLV
AGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQ
DLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFA
HVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGP
SGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENT
TFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVES
LYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMP
ARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSV
FVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARG
GDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG

mRNA from alignment at CM002459.1:627308..629870+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2546 ID=rna2546|Name=rna2546|organism=Nannochloropsis gaditana|type=mRNA|length=2563bp|location=Sequence derived from alignment at CM002459.1:627308..629870+ (Nannochloropsis gaditana)
AAAGGGTCAGGAACGGCGTTCTAGAATATGATGGGAAGATAGTCAAAGCT
TGTTGGTGTACAGggcggagcaaggagggtTGCCCGTCGTGAGAGGTACA
GTGCCTTAATCGCTCGAACTTCCACTTGGAGGGGgcgatgggaagggaga
gcgatGATTGCGATCGTATTCCACCCTGGGAGAGACGTCGTCGAACACCG
CACACCTGGTCGCGAGCCATAATTGTCACTTTCATTACTCTACTATTTAC
AACGGGAAGTGGATGGACTCGGTCGCCGTCGGTCCTATTTTGGGCCGCTG
TGGTTTTTGCGTAAGGACGAGCGGAAACTCCTTCGAAACCCTCCCTCGAG
ATGTGTGCGTGCGGTCACCTCAATGGTGTAAATGTTTGGACCAGCTTGAA
GCCACCTATGCATGCGCTATAGCAGGCACTATTTCGAGCACGTTTCCCTC
GCTTTTTTTGGGTCTGCAGATGGATGACCTCACCGTGTTCGTCCTTTGCC
GCACAGGATGCAAGCCGTACTGTCgaccgcggaggaggctgggaTGGATG
TGGACGCGCATATGGATGGtcaagcgggggggggcgcgaagGACGACACA
TCCAATTTGACTGGTGCCAACGCTGAGAGCGGAAGCGGTGCCAACGATGA
TATTGACGCGCCTAATTTTGGTACGTGGGCCATCATTTTCCAGTTGGGTT
TTGCTGAGGTCGCCAGCGTCTGCGCACATATTTCGAGTTCTACCCGTTAC
CACTTATCGGTGTCTTCTTGAGGAAAACGTATGACTCTTTTCATTCAAGA
CTTGTTGCTTAAATATATGTTGCTTCAGAAGGCTTTACCCGCCTTCTCTT
CGATAAGTCATGCGTCTAAAGCCCACCTTTTGTTCTGGATATACGTCTAT
ACTGCAGACATCGACACGTATGCTGCCCGGTATGCTGGCTATACTAAGCT
TCGGCGCTTACTTTTCATCGCGCAGCATTGCAAAAGCCGCGAACTCGACG
CGTACCGTCTGGCCCTGGACGCCCTCACACAGCCGCGGTCCCTCAATATT
CAGCTCTACCGGAAAGTGATGGGCCTGGTGGCGGGGCGCCTTGGCCCAGC
CTATTCTCTTGACGCCAcgtgggcggaggaaatCGACAAACGGGCGGCCA
TGCAAAAGGAGCGGCTGGAGAGCGACCTGCAAACCTCCCGGACGGGCATG
GCCAAGGAGAGCATCCGCCTGGGCTATCAGGACCTAGGCGAGTTCCACTA
CGCGCGGGGCGACCTCGACAACGCGCTCAAGAACTTCGTCCGGACACGCG
ACTACTGCTCCATCGCGCGGCATAATGTGGAGATGTGCTTGAACGTGATC
AAGGTCTCGGTGGGGCTAGACAGCTTCGCGCACGTCAGCACCTACGTCTC
AAAAGCCGAGCACGCCACGGGTATGAACGACCCGAAGGTGCGACACAAAC
TGAAAGCGGCCGCCGGTCTCGCTCAATTGTCGCAGCATAACTACGATTCC
GCAGCTCGCAAGTTCCTTGACTGTGGACCCTCCGGCCTAACTAGAGGCAC
CCCCCAAGACCCCGGGCCCGCGTCTTTCGCCCACGTCCTGGCCCCCGAAG
ACGTGGCCACGTACGGAGGCCTCTGCGCGCTGGCCTCCCTGGACCGGCCG
GAGTTGAAGCGCTCCCTCCTGGAAAACACGACGTTCAAGGGCCTTCTGGA
CCTCGTGCCCATGGTGCGGGAGCTCATCTACGACTTTTGCAGGTCGCGCT
ACGGAGCTTGCCTCGGCGCCCTGGCCGCTCTTAAGCCCGAGCTCCTGCTG
GATGTCCATCTCCATCGACACGTGGAGTCGCTGTACCAGCGCATCCGAGA
GCGGTGCCTCCTTCAATACTTCATTCCCTACCTGTCCGTGGACCTGGGGT
CCATGGCGAACACCTTCGACACCCCCCTACCCCgtttggagaaggagata
gCAGGGCTCATTGTGACGAATCGAATGCCTGCACGCATCGACAGCCAGCG
GAAAACCCTCCATCGTCGACAAGTGGACCCGCGGGAGGCAGGCTACAAGA
AGGTCTTCAGCATGGGCCAGGAGTTTCTGCGGGAGATGAGGGCGATGCTG
TTCCGCATGAGCTTGCTGGAACACTCCGTGTTTGTAGAAGCAGAGACACG
CggaggtgctggtggaggaggcgatgcaAGAAGTGGTGGTCGAGCAGGCA
CCTTGGGGAGCCCGCACCCCTCACAGGGACGGGCGGCCCGTGGtcagggg
gcgggcggggggacaAGTCAAGCGCGTGGCGGGGAcgcggtgctggaggg
ggagagctcGCCGGAGGAGGATACCGACATGGGCGAGGACTTCGGCTCGG
CCAACCAACAGGACCCTGACCTCGAGGCTACGCTTACAGGAGAGGGCTGA
TGTTTACTAATGAGTGAATTTTTATCGGCGCGTGAAAAGCATCGATGCAT
GAGGAAAGCGAATGCACAGGTACACAGTCGATGCGATCGTAGCGAGCCTG
CCTGATTCAAAACAATACAAACAAAGCAAGAGCTGCGACGGGAGGCCATT
ACCTCTTGAGTTT

Coding sequence (CDS) from alignment at CM002459.1:627308..629870+

>rna2546 ID=rna2546|Name=rna2546|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002459.1:627308..629870+ (Nannochloropsis gaditana)
ATGACTCTTTTCATTCAAGACTTGTTGCTTAAATATATGTTGCTTCAGAA
GGCTTTACCCGCCTTCTCTTCGATAAGTCATGCGTCTAAAGCCCACCTTT
TGTTCTGGATATACGTCTATACTGCAGACATCGACACGTATGCTGCCCGG
TATGCTGGCTATACTAAGCTTCGGCGCTTACTTTTCATCGCGCAGCATTG
CAAAAGCCGCGAACTCGACGCGTACCGTCTGGCCCTGGACGCCCTCACAC
AGCCGCGGTCCCTCAATATTCAGCTCTACCGGAAAGTGATGGGCCTGGTG
GCGGGGCGCCTTGGCCCAGCCTATTCTCTTGACGCCAcgtgggcggagga
aatCGACAAACGGGCGGCCATGCAAAAGGAGCGGCTGGAGAGCGACCTGC
AAACCTCCCGGACGGGCATGGCCAAGGAGAGCATCCGCCTGGGCTATCAG
GACCTAGGCGAGTTCCACTACGCGCGGGGCGACCTCGACAACGCGCTCAA
GAACTTCGTCCGGACACGCGACTACTGCTCCATCGCGCGGCATAATGTGG
AGATGTGCTTGAACGTGATCAAGGTCTCGGTGGGGCTAGACAGCTTCGCG
CACGTCAGCACCTACGTCTCAAAAGCCGAGCACGCCACGGGTATGAACGA
CCCGAAGGTGCGACACAAACTGAAAGCGGCCGCCGGTCTCGCTCAATTGT
CGCAGCATAACTACGATTCCGCAGCTCGCAAGTTCCTTGACTGTGGACCC
TCCGGCCTAACTAGAGGCACCCCCCAAGACCCCGGGCCCGCGTCTTTCGC
CCACGTCCTGGCCCCCGAAGACGTGGCCACGTACGGAGGCCTCTGCGCGC
TGGCCTCCCTGGACCGGCCGGAGTTGAAGCGCTCCCTCCTGGAAAACACG
ACGTTCAAGGGCCTTCTGGACCTCGTGCCCATGGTGCGGGAGCTCATCTA
CGACTTTTGCAGGTCGCGCTACGGAGCTTGCCTCGGCGCCCTGGCCGCTC
TTAAGCCCGAGCTCCTGCTGGATGTCCATCTCCATCGACACGTGGAGTCG
CTGTACCAGCGCATCCGAGAGCGGTGCCTCCTTCAATACTTCATTCCCTA
CCTGTCCGTGGACCTGGGGTCCATGGCGAACACCTTCGACACCCCCCTAC
CCCgtttggagaaggagatagCAGGGCTCATTGTGACGAATCGAATGCCT
GCACGCATCGACAGCCAGCGGAAAACCCTCCATCGTCGACAAGTGGACCC
GCGGGAGGCAGGCTACAAGAAGGTCTTCAGCATGGGCCAGGAGTTTCTGC
GGGAGATGAGGGCGATGCTGTTCCGCATGAGCTTGCTGGAACACTCCGTG
TTTGTAGAAGCAGAGACACGCggaggtgctggtggaggaggcgatgcaAG
AAGTGGTGGTCGAGCAGGCACCTTGGGGAGCCCGCACCCCTCACAGGGAC
GGGCGGCCCGTGGtcagggggcgggcggggggacaAGTCAAGCGCGTGGC
GGGGAcgcggtgctggagggggagagctcGCCGGAGGAGGATACCGACAT
GGGCGAGGACTTCGGCTCGGCCAACCAACAGGACCCTGACCTCGAGGCTA
CGCTTACAGGAGAGGGCTGA

Synonyms

Publications