EWM28122.1, cds2538 (CDS) Nannochloropsis gaditana

Overview
NameEWM28122.1
Unique Namecds2538
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:628088..629707 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28122.1
Productfusca protein fus6
Orig transcript idgnl|cribi|Naga_100036g40.2542.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:628088..629707 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR01958526S_proteasome_reg_su-Rpn7
IPR000717PCI_dom
Homology
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|585110466|gb|EWM28122.1| (fusca protein fus6 [Nannochloropsis gaditana])

HSP 1 Score: 1107.82 bits (2864), Expect = 0.000e+0
Identity = 539/539 (100.00%), Postives = 539/539 (100.00%), Query Frame = 0
Query:    1 MTLFIQDLLLKYMLLQKALPAFSSISHASKAHLLFWIYVYTADIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 539
            MTLFIQDLLLKYMLLQKALPAFSSISHASKAHLLFWIYVYTADIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG
Sbjct:    1 MTLFIQDLLLKYMLLQKALPAFSSISHASKAHLLFWIYVYTADIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 539          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|585110465|gb|EWM28121.1| (fusca protein fus6 [Nannochloropsis gaditana])

HSP 1 Score: 1022.69 bits (2643), Expect = 0.000e+0
Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 539
            DIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG
Sbjct:   55 DIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 551          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|168011167|ref|XP_001758275.1| (predicted protein [Physcomitrella patens] >gi|162690731|gb|EDQ77097.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 416.387 bits (1069), Expect = 1.659e-138
Identity = 207/406 (50.99%), Postives = 279/406 (68.72%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHCKSR--ELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLL 446
            D+++YA+ Y+G+TK+ RL FIA H  SR  EL+A R+ALD + +    N  L+++ +  + GRLGP Y LD  W + +++RAA ++E+LE +L   RT + KESIR+GY DLG+FHYARGDL  A K +VRTRDYC+ ++H + MCLNVI VS+ L  F HVS YVSKA+    + DP V  KLK AAGLA L    Y  AARKF+D         T  + G ++++ V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  SRY +CLG L  LKP LLLD+HL+ HVE+LY++IR + L+QY  P++SVDL +MA+ F T +  LEKE+A LI  N++ ARIDS  K L+ R  D R   +++V   G +F RE RAML R +L+
Sbjct:   20 DVESYASLYSGHTKIARLHFIADHSNSRNLELEALRMALDEIRKGE--NTVLFKECVEKINGRLGPGYGLDQEWIDTVERRAAQRQEKLEMELNGYRTNLIKESIRMGYNDLGDFHYARGDLQQAFKCYVRTRDYCTTSKHIIAMCLNVILVSIELGHFVHVSNYVSKADQTPDVQDPVVLAKLKCAAGLAHLESKKYKLAARKFVD---------TNFELG-SNYSDVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEVRELIHDFYASRYASCLGYLQKLKPNLLLDIHLYDHVETLYEQIRHKALIQYTNPFISVDLNTMASAFKTSVTGLEKELAALITENQIQARIDSHNKILYARHADQRNTTFQRVLQTGSDFQRETRAMLLRANLM 413          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|1026756136|gb|OAE18628.1| (hypothetical protein AXG93_1923s1850 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 416.772 bits (1070), Expect = 5.234e-138
Identity = 208/413 (50.36%), Postives = 278/413 (67.31%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHCKSR--ELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVE 453
            D+++YA+ Y G+TK+ RL FIA HC SR  EL+A R+A D +   R  N  LYR+ +  +AGRLG  Y LD  W + +D+RAA ++E+LE +L   +T + KESIR+GY DLG+F Y RGDL  A K +VRTRDYC+ ++H + MCLNVI VS+ L  F HVS YVSKA+    + DP V  KL+ AAGLA L    Y  AARKF+D         T  + G  +F  V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  SRY +CLG L  LKP LLLD+HL+ HVE+LY+++R + L+QY  P++SVDL +MA+ F T +  LEKE+A LI+ N++ ARIDS  K L  R  D R A +++V   G +F R+ RAML R +L+ H   ++
Sbjct:   47 DVESYASLYTGHTKIARLHFIADHCHSRALELEALRMASDEI--KRGENTALYRESVDKIAGRLGSTYLLDQEWVDVVDRRAAQRQEKLEMELNGYKTNLIKESIRMGYNDLGDFFYGRGDLQQAFKCYVRTRDYCTTSKHIIAMCLNVILVSIELGQFVHVSNYVSKADQTPDVQDPIVLAKLRCAAGLAHLESKKYKLAARKFVD---------THFELGN-NFTEVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEVRELIHDFYASRYASCLGYLQKLKPNLLLDIHLYDHVEALYEQVRHKALIQYTNPFISVDLNTMASAFKTSVAGLEKELAALIMENQIQARIDSHNKILFARHADQRNATFQRVLQTGSDFQRDTRAMLLRANLMRHDFIMK 447          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|672159518|ref|XP_008799523.1| (PREDICTED: COP9 signalosome complex subunit 1 [Phoenix dactylifera])

HSP 1 Score: 413.69 bits (1062), Expect = 4.064e-137
Identity = 206/408 (50.49%), Postives = 275/408 (67.40%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHCKSR--ELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 448
            D++ YA+ Y G TK+ RLLFIA  C +   +L+A RLA D + +    + QLYR+    +AGRLGP Y+LD  WA+ ID+RA  +K++LE++L   +T + KESIR+GY DLG+F+YA G L +A KN+VRTRDYC+ ++H ++MCLNVI VS+ L  F HVS YVSKAE      DP    KL+ AAGLA L    Y  AARKFL+ GP              ++A V+AP+DVATYGGLCAL+S DR ELK  +++N  F+  L+LVP VRELI+DF  SRY +CL  L  LKP LLLD+HLH HVE+LY +IR + ++QY  P++SVDL +MA+ F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A +++V   G EF R+ RAML R +L++H
Sbjct:   41 DVEAYASLYTGRTKVTRLLFIADRCGNEGMQLEALRLAYDEIKKGE--DSQLYREAASKIAGRLGPQYTLDQAWADSIDRRAEQRKDKLENELSGYKTNLIKESIRMGYNDLGDFYYAHGQLGDAFKNYVRTRDYCTTSKHIIQMCLNVILVSIELGQFMHVSNYVSKAEQTPDTLDPVTVAKLRCAAGLAYLEAKKYKLAARKFLETGPE----------LGNNYAEVIAPQDVATYGGLCALSSFDRTELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCLEYLENLKPNLLLDIHLHDHVETLYTQIRHKAIIQYTHPFISVDLHTMADAFKTGVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGVEFERDARAMLLRANLIKH 436          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|1070964966|gb|OEL29857.1| (COP9 signalosome complex subunit 1 [Dichanthelium oligosanthes])

HSP 1 Score: 412.149 bits (1058), Expect = 1.294e-136
Identity = 197/408 (48.28%), Postives = 279/408 (68.38%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHC--KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 448
            D++ YA +Y+G T+L RL+F+A+ C  ++ +L+A R+A D +   R  ++QL+R V   + GRLGP Y LD  W + + +RA  +KE+LE++L   RT + KESIR+GY D+G+F YA G L +A K+++RTRDYC+ ++H V+MC+NVI VS+ L  FAHVS YVSKAE    + DP +  KL+AAAGLA L    Y  AARKF++   +G+  G        +++ V+AP+DVA YG LCALAS DR +LK  +++N  F+  L+LVP VREL+ DF  SRYG+CLG L  LKP LLLD+HLH HVE+LY  IR + ++QY +P++SVDL +MA  F T +  LEKE+A LI  N++ ARIDS  K L+ R  D R   +++V   G EF R++++ML R +LL+H
Sbjct:   36 DVEAYAGQYSGRTRLARLIFVAERCGVEAMQLEALRMAYDEI--KRREDVQLHRDVAHKINGRLGPRYGLDQAWVDNVSRRAEQRKEKLENELNGYRTNLIKESIRMGYNDIGDFFYAHGQLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQFAHVSNYVSKAEQTPDLLDPIIVAKLRAAAGLANLETKKYKLAARKFVE---TGIELGN-------NYSEVIAPQDVAVYGALCALASFDRSDLKSKVIDNINFRNFLELVPEVRELVNDFYASRYGSCLGHLEKLKPNLLLDIHLHEHVETLYTDIRHKAIIQYTLPFISVDLNTMATAFKTSVSMLEKELAALITENKIQARIDSHNKILYARHADQRNTTFQRVLQTGNEFERDVKSMLLRANLLKH 431          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|225453732|ref|XP_002272895.1| (PREDICTED: COP9 signalosome complex subunit 1 [Vitis vinifera] >gi|296089065|emb|CBI38768.3| unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 410.994 bits (1055), Expect = 3.511e-136
Identity = 206/414 (49.76%), Postives = 275/414 (66.43%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHCKSREL--DAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEA 454
            DI+ YA+ Y+G TK+ RLLFIA  C++R++  +AYR+A D + +    N QLYR+V+  + GRLGP Y LD  W E +++RA  +KE+LE++L   RT + KESIR+GY D G+F+YA G L +A KN+VRTRDYC+ ++H + MCLN I VS+ +  F HV++YVSKAE      DP    KL+ AAGLA L    Y  AARKFL+ G          + G  ++  V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  S Y +CL  L  LK  LLLD+HLH HVE LY +IR + L+QY  P++SVDL  MAN F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A +++V   G EF R++RAML R +LL+H   + A
Sbjct:   36 DIEAYASLYSGRTKITRLLFIADRCENRQMQMEAYRMAYDEIKKGE--NTQLYREVVQKIDGRLGPQYGLDLVWTESVERRADQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIHMCLNAILVSIEMGQFTHVTSYVSKAEQTPEALDPVTVAKLRCAAGLAHLEAKKYKLAARKFLETGA---------ELGN-NYTEVIAPQDVATYGGLCALASFDRTELKNKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLDYLGNLKTNLLLDIHLHDHVEMLYNQIRHKALIQYTHPFVSVDLRMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGNEFDRDVRAMLLRANLLKHEYNLRA 437          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|719998787|ref|XP_010255512.1| (PREDICTED: COP9 signalosome complex subunit 1 [Nelumbo nucifera])

HSP 1 Score: 410.994 bits (1055), Expect = 4.040e-136
Identity = 204/414 (49.28%), Postives = 279/414 (67.39%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHC--KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEA 454
            D++ YA+ Y+G TK+ RLLFIA  C  +S +L+A R+A D + +    N QL+R+V+  + GRLGPAY +D  WA+ +D+RA  +KE+LE++L + RT + KESIR+GY D G+F+YA G L +A KN+VRTRDYC+ ++H ++MCLN I VS+ +  F HV++YVSKAE      DP    KL+ AAGLA L    Y  AARKFL+ GP         + G  ++  V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  S Y +CL  L  LK  LLLD+HL+ HVE+LY +IR + L+QY  P++SVDL  MA+ F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A +++V   G EF R++RAML R +LL+H   + A
Sbjct:   35 DVEAYASLYSGRTKITRLLFIADQCGNQSMQLEALRMAYDEIKKGE--NTQLFREVVQKIDGRLGPAYRMDQAWADNVDRRAEQRKEKLENELNSYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKNYVRTRDYCTTSKHIIQMCLNAILVSIEMGQFTHVNSYVSKAEQTPDALDPVTVAKLRCAAGLAHLDGKKYKLAARKFLETGP---------ELGN-NYTEVIAPQDVATYGGLCALASFDRTELKNKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLEYLENLKANLLLDIHLYDHVETLYNQIRHKALIQYTHPFVSVDLRMMASAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDRDVRAMLLRANLLKHEYNLRA 436          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|1190982246|ref|XP_020880001.1| (COP9 signalosome complex subunit 1 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 410.994 bits (1055), Expect = 4.362e-136
Identity = 202/409 (49.39%), Postives = 276/409 (67.48%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHC---KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 448
            DI+ YAA Y G TK+ RLLFIA HC    + +L+A R+A D + +    N QL+R+V+  + GRLG  Y +D++W E +D+RA  +K +LE++L + RT + KESIR+GY D G+F+YA G L +A KN++RTRDYC+  +H + MC+N I VS+ +  F HV++YV+KAE      DP V  KL+ A+GLA L    Y  AARKFLD  P              S+  V+AP+D+ATYGGLCALAS DR ELK+ +++N  F+  L+LVP VRELI DF  SRY +CL  LA+LK  LLLD+HLH HV++LY +IR++ L+QY +P++SVDL  MA+ F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A ++KV  MG EF R++RAML R +LL+H
Sbjct:   35 DIEAYAALYKGRTKIMRLLFIANHCGGNHAIQLEALRMAYDEIKKGE--NTQLFREVVNKIGGRLGDKYGMDSSWCEAVDRRAEQKKGKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPDPLDPIVIAKLRCASGLAHLELKKYKLAARKFLDVNPEL----------GNSYNEVIAPQDIATYGGLCALASFDRSELKQKVIDNINFRNFLELVPEVRELINDFYSSRYASCLEYLASLKANLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRANLLKH 431          
BLAST of EWM28122.1 vs. NCBI_GenBank
Match: gi|1109195446|ref|XP_019189529.1| (PREDICTED: COP9 signalosome complex subunit 1-like [Ipomoea nil])

HSP 1 Score: 410.609 bits (1054), Expect = 6.190e-136
Identity = 208/419 (49.64%), Postives = 273/419 (65.16%), Query Frame = 0
Query:   43 DIDTYAARYAGYTKLRRLLFIAQHCK--SRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGG 459
            DI+ Y A Y+G TK+ RLLFIA  C   S +L+A R+A D + +    N QL+R+V+  + GRLGP Y  DA W + +D+RA  +KE+LE++L   RT + KESIR+GY D G+F+YA G L  A KN+VRTRDYC+ A+H + MCLN I VS+ +  F HV++YVSKAE +    DP    KL+ AAGLA L    Y  AARKFL+ G         QD G  ++  V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI DF  S Y +CL  L  LK  LLLD+HLH HVE+LY +IR + L+QY  P++SVDL  MAN F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A +++V   G EF R++RAML R +LL+H     +  + G
Sbjct:   37 DIEAYDALYSGRTKIMRLLFIADRCNNTSMQLEALRMAYDEIKKGE--NTQLFREVVQKINGRLGPNYGPDAGWTDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGQLGEAFKNYVRTRDYCTTAKHIIHMCLNAILVSIEMGQFTHVTSYVSKAEQSQDALDPITTAKLRCAAGLAHLEAKKYKLAARKFLEVG---------QDLGN-NYTEVIAPQDVATYGGLCALASFDRVELKSKVIDNINFRNFLELVPEVRELIQDFYTSHYASCLEYLGNLKANLLLDIHLHDHVETLYSQIRNKALIQYTHPFVSVDLNMMANAFKTTVTGLEKELESLITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGGEFDRDVRAMLLRANLLKHEYNARSSRKHG 443          
The following BLAST results are available for this feature:
BLAST of EWM28122.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110466|gb|EWM28122.1|0.000e+0100.00fusca protein fus6 [Nannochloropsis gaditana][more]
gi|585110465|gb|EWM28121.1|0.000e+0100.00fusca protein fus6 [Nannochloropsis gaditana][more]
gi|168011167|ref|XP_001758275.1|1.659e-13850.99predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1026756136|gb|OAE18628.1|5.234e-13850.36hypothetical protein AXG93_1923s1850 [Marchantia p... [more]
gi|672159518|ref|XP_008799523.1|4.064e-13750.49PREDICTED: COP9 signalosome complex subunit 1 [Pho... [more]
gi|1070964966|gb|OEL29857.1|1.294e-13648.28COP9 signalosome complex subunit 1 [Dichanthelium ... [more]
gi|225453732|ref|XP_002272895.1|3.511e-13649.76PREDICTED: COP9 signalosome complex subunit 1 [Vit... [more]
gi|719998787|ref|XP_010255512.1|4.040e-13649.28PREDICTED: COP9 signalosome complex subunit 1 [Nel... [more]
gi|1190982246|ref|XP_020880001.1|4.362e-13649.39COP9 signalosome complex subunit 1 [Arabidopsis ly... [more]
gi|1109195446|ref|XP_019189529.1|6.190e-13649.64PREDICTED: COP9 signalosome complex subunit 1-like... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2546rna2546Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications