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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100004g159.9171.mrna |
| Orig protein id | gnl|cribi|Naga_100004g159.9171 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:558300..560812 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2516 ID=rna2516|Name=rna2516|organism=Nannochloropsis gaditana|type=mRNA|length=2509bp
GCGCGGAAACCCTCGCTTTCAATGCCTCCCCGTCGCAGCGTCCTGAGAGC
TACCGTGCTCCCGACAGGGTAACCTGGAGAACTGCCCCCTCAATACGTGC
ATGATAGCTTTTCATCCTCTGTTTCAATCTCGTGGTTAACATATGCCGTG
TAGTTACTCCGTTCCCGGCCTTCAGCCCGGGGCCCGAAAAATATTATGCC
GGTGCAGAAGCAGCGGATGCCTGGCCGGTCTTATTTGCTCTAGCGGCAAC
GCTGAGCTTTTTAAAGAACGAAGAACCTCGAGGATTGCTGAGGCAGTAAG
TTTTTGTTGTGGCCTTCTCATTGTGATGCCGACTTTTGCCAACATCATGC
AGACAGCTTAAATCATAGGGGAATGTCTTTCGGCAGCGCTGCGCCGAACG
CCTTCTCATTTGGAGGAACGACATCGACACCTTTTTCGTCGGCCGCTGGA
AATACGTCCACCTTTGGTGCAGCGCCTAGTGTTTCTTCAGCTTTAGGTGC
CACTCCCTCATCTATACAAACATCGCATGGTGCATCTCCGGGCGCGACAA
GCTCAGCAGCGCCACCGAACGATCAGGGATTCACGGGGGACACTACTTTC
TCGTCTTTGCCTCAATATATGCAATTGAGGGTGTGGGAGCTGCACAAACT
TGTGAGGCAGCACAGAGAATATGCTGATTCCCTGAACAAATTTACGACGC
CAAGTTATAGCTTGGATCGTTTCACGAAGGTACGTCAGAATCAAGACGTG
GGCGATAGAAGGGAAAAATGCAAGAGGGACAAGCAATCTTTTGATTACAA
CCGCTCGTGTCTAGAGAAACATTTCTAGTATGTTTTTTTGGAGTTGACTG
TAGCTTGAAATATGTCGTGCTCTTTGATGCCGATATCACTCAGTCCTCTT
GATGTTTGCGTGCCATAGCCTCCAGCTATAATGGTTAATCATCTGCTTCT
TTGTGTGGAGGTTTCATGGTACATACATTAACCTTGAGTCTACCATGTCC
TTTAAATTACCGTGGACAGAGGCTGAAGCTGGATATATTGCGAGTGCAAA
ATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCGAAAGCAAGTC
GAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAGAAAATGGAGC
CCTGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACTTTGCGGCAAT
CACAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGATACAGTGCGAG
GCGCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTTACCACAAGGT
GGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGGGGTCTATCAA
GAGAATTCACTCCTGACCAGTTGGCGACCCTCATTCGACTCCAAAATGAT
GCACTTCTCAAAGTGGCTGCCCAGGTTGCTGTTGTACATGAGATGGTCGA
GCGGCTGCGCAGCGAATGGAACTCACGTACAGGTCAAGACCCATTTCAGG
AGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAAACGCAAGACCAAC
CGTTTGATGATACGAAGTCCACAAGAGCAACTTCGACAAAGCATTGGCCT
GTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCTCCACTCGCTCAGC
CAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTTACCTTCAACTTCC
GCGTCAAATACCATGTAAGTGATAAGTTACTAGTCGTGTGCATTGTTATC
AAAGTACTGATTTTCTTGTTCCTGTAACTTGTAGCACATCAGGGACTGGC
GCCGGAACATTTAATCCTCTCGCTTATTCTAGTCAAGATGCAGTCGACAG
GTCAGAGAAATCTGCCAAGACAAAAGCACGACGATAAATTAATGCTTAAA
TGCGCGATCTCGAGATAAATTTCGTTTCAAAACCGGTGTATTTGGTTTTC
CATTATTTCTCTGTTTCTTACATATCACTCATTTCGGTTCATCACCACGC
CGCGTCCCACATTCTTTTCCCTCTGCTTCTCGACTGCATGTATGAAGCGC
GTATAGAATGCTGAGCTTCCATCCTCAAAGGCCATCAATGGCACACAAAT
GTGAAGTTTGGTTTGACGTGAATGCACGCATAGCGTTTTCTTCTTTTGTT
AAAAGCTCAATCCGCCTCGTTCTTTACATCCTCGGTATGTGTGGACGTGA
TGCTGATGGACGTGCGTCCAAACGGAAAGAGGGGAAAGGCTACATGGCAA
CGACGACTGTTAATTTGTCCAGTAAGTAAAAAGAACTATCTGACAAAAGA
GAAAGATATTTACTTGTCAGCTACTCCTATAAAACTGAGCTCTTTGCAAC
ATACGTTCTCCATTTTGTCCTCAACCGCATGCGACGGGTGTGAAGATATC
TCCCAAGGAAATTGATGACAAAGGGAGGCATTTCCATGATGTAGGGATCC
CTCCCTGAGACATGAAGGCTCACAGCCCAAAAATCAAAGAAGAGATTTAA
AGCAAGAGA back to topprotein sequence of rna2516 >rna2516-protein ID=rna2516-protein|Name=rna2516|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQT
SHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREY
ADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLR
GFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQ
EYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLK
VAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMI
RSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNT
M back to topmRNA from alignment at CM002459.1:558300..560812- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2516 ID=rna2516|Name=rna2516|organism=Nannochloropsis gaditana|type=mRNA|length=2513bp|location=Sequence derived from alignment at CM002459.1:558300..560812- (Nannochloropsis gaditana)
TGCCTGGCCGGTCTTATTTGCTCTAGCGGCAACGCTGAGCTTTTTAAAGA
ACGAAGAACCTCGAGGATTGCTGAGGCAGTAAGTTTTTGTTGTGGCCTTC
TCATTGTGATGCCGACTTTTGCCAACATCATGCAGACAGCTTAAATCATA
GGGGAATGTCTTTCGGCAGCGCTGCGCCGAACGCCTTCTCATTTGGAGGA
ACGACATCGACACCTTTTTCGTCGGCCGCTGGAAATACGTCCACCTTTGG
TGCAGCGCCTAGTGTTTCTTCAGCTTTAGGTGCCACTCCCTCATCTATAC
AAACATCGCATGGTGCATCTCCGGGCGCGACAAGCTCAGCAGCGCCACCG
AACGATCAGGGATTCACGGGGGACACTACTTTCTCGTCTTTGCCTCAATA
TATGCAATTGAGGGTGTGGGAGCTGCACAAACTTGTGAGGCAGCACAGAG
AATATGCTGATTCCCTGAACAAATTTACGACGCCAAGTTATAGCTTGGAT
CGTTTCACGAAGGTACGTCAGAATCAAGACGTGGGCGATAGAAGGGAAAA
ATGCAAGAGGGACAAGCAATCTTTTGATTACAACCGCTCGTGTCTAGAGA
AACATTTCTAGTATGTTTTTTTGGAGTTGACTGTAGCTTGAAATATGTCG
TGCTCTTTGATGCCGATATCACTCAGTCCTCTTGATGTTTGCGTGCCATA
GCCTCCAGCTATAATGGTTAATCATCTGCTTCTTTGTGTGGAGGTTTCAT
GGTACATACATTAACCTTGAGTCTACCATGTCCTTTAAATTACCGTGGAC
AGAGGCTGAAGCTGGATATATTGCGAGTGCAAAATTCGCATGCGGAGATT
TCCCTTGTTGCAAGCGAATTGCGAAAGCAAGTCGAGCAATTGCGGGGTTT
CACTCAGAAGCTCCAAGCAGCAGAAAATGGAGCCCTGCAATACGGTACAC
CAAGAGCGGCCGGTGTGGAAACTTTGCGGCAATCACAACAAAGTCATGCT
AGTATTTTGAAAGAAATAGCGATACAGTGCGAGGCGCGGCTGCAAGAGTA
CGACGCACACATTCAGGAGCTTTACCACAAGGTGGTTGCGAGTCGGACTG
TGGGCGGCAGCGATGGATTCGGGGGTCTATCAAGGTAGATTCGGGTACCC
TTTCCGTCTTACTGCGAGGCAAGAATGTGCTTCAGCAGGTTTACTTATTG
CATCTCTCAATACTGCGACAGAGAATTCACTCCTGACCAGTTGGCGACCC
TCATTCGACTCCAAAATGATGCACTTCTCAAAGTGGCTGCCCAGGTTGCT
GTTGTACATGAGATGGTCGAGCGGCTGCGCAGCGAATGGAACTCACGTAC
AGGTCAAGACCCATTTCAGGTACAAAAGAAAAGGAGGATGGGTGGGAGTC
AATTTTTCAAGCCTTTCGGTCTTGAGCGTGGTGAGGTCGAGGACTTCTGT
CGGCCTTGTGTCTAACGTACGTCATTTCGATCTTGCGTGACTTCCATCAT
CAGGAGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAAACGCAAGAC
CAACCGTTTGATGATACGAAGTCCACAAGAGCAACTTCGACAAAGCATTG
GCCTGTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCTCCACTCGCT
CAGCCAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTTACCTTCAAC
TTCCGCGTCAAATACCATGTAAGTGATAAGTTACTAGTCGTGTGCATTGT
TATCAAAGTACTGATTTTCTTGTTCCTGTAACTTGTAGCACATCAGGGAC
TGGCGCCGGAACATTTAATCCTCTCGCTTATTCTAGTCAAGATGCAGTCG
ACAGGTCAGAGAAATCTGCCAAGACAAAAGCACGACGATAAATTAATGCT
TAAATGCGCGATCTCGAGATAAATTTCGTTTCAAAACCGGTGTATTTGGT
TTTCCATTATTTCTCTGTTTCTTACATATCACTCATTTCGGTTCATCACC
ACGCCGCGTCCCACATTCTTTTCCCTCTGCTTCTCGACTGCATGTATGAA
GCGCGTATAGAATGCTGAGCTTCCATCCTCAAAGGCCATCAATGGCACAC
AAATGTGAAGTTTGGTTTGACGTGAATGCACGCATAGCGTTTTCTTCTTT
TGTTAAAAGCTCAATCCGCCTCGTTCTTTACATCCTCGGTATGTGTGGAC
GTGATGCTGATGGACGTGCGTCCAAACGGAAAGAGGGGAAAGGCTACATG
GCAACGACGACTGTTAATTTGTCCAGTAAGTAAAAAGAACTATCTGACAA
AAGAGAAAGATATTTACTTGTCAGCTACTCCTATAAAACTGAGCTCTTTG
CAACATACGTTCTCCATTTTGTCCTCAACCGCATGCGACGGGTGTGAAGA
TATCTCCCAAGGAAATTGATGACAAAGGGAGGCATTTCCATGATGTAGGG
ATCCCTCCCTGAGACATGAAGGCTCACAGCCCAAAAATCAAAGAAGAGAT
TTAAAGCAAGAGA back to topCoding sequence (CDS) from alignment at CM002459.1:558300..560812- >rna2516 ID=rna2516|Name=rna2516|organism=Nannochloropsis gaditana|type=CDS|length=4224bp|location=Sequence derived from alignment at CM002459.1:558300..560812- (Nannochloropsis gaditana)
GAGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAAACGCAAGACCAA
CCGTTTGATGATACGAAGTCCACAAGAGCAACTTCGACAAAGCATTGGCC
TGTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCTCCACTCGCTCAG
CCAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTTACCTTCAACTTC
CGCGTCAAATACCATGTAAAGAATTCACTCCTGACCAGTTGGCGACCCTC
ATTCGACTCCAAAATGATGCACTTCTCAAAGTGGCTGCCCAGGTTGCTGT
TGTACATGAGATGGTCGAGCGGCTGCGCAGCGAATGGAACTCACGTACAG
GTCAAGACCCATTTCAGAGGCTGAAGCTGGATATATTGCGAGTGCAAAAT
TCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCGAAAGCAAGTCGA
GCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAGAAAATGGAGCCC
TGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACTTTGCGGCAATCA
CAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGATACAGTGCGAGGC
GCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTTACCACAAGGTGG
TTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGGGGTCTATCAAGA
TGTCTTTCGGCAGCGCTGCGCCGAACGCCTTCTCATTTGGAGGAACGACA
TCGACACCTTTTTCGTCGGCCGCTGGAAATACGTCCACCTTTGGTGCAGC
GCCTAGTGTTTCTTCAGCTTTAGGTGCCACTCCCTCATCTATACAAACAT
CGCATGGTGCATCTCCGGGCGCGACAAGCTCAGCAGCGCCACCGAACGAT
CAGGGATTCACGGGGGACACTACTTTCTCGTCTTTGCCTCAATATATGCA
ATTGAGGGTGTGGGAGCTGCACAAACTTGTGAGGCAGCACAGAGAATATG
CTGATTCCCTGAACAAATTTACGACGCCAAGTTATAGCTTGGATCGTTTC
ACGAAGGAGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAAACGCAA
GACCAACCGTTTGATGATACGAAGTCCACAAGAGCAACTTCGACAAAGCA
TTGGCCTGTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCTCCACTC
GCTCAGCCAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTTACCTTC
AACTTCCGCGTCAAATACCATGTAAAGAATTCACTCCTGACCAGTTGGCG
ACCCTCATTCGACTCCAAAATGATGCACTTCTCAAAGTGGCTGCCCAGGT
TGCTGTTGTACATGAGATGGTCGAGCGGCTGCGCAGCGAATGGAACTCAC
GTACAGGTCAAGACCCATTTCAGAGGCTGAAGCTGGATATATTGCGAGTG
CAAAATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCGAAAGCA
AGTCGAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAGAAAATG
GAGCCCTGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACTTTGCGG
CAATCACAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGATACAGTG
CGAGGCGCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTTACCACA
AGGTGGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGGGGTCTA
TCAAGATGTCTTTCGGCAGCGCTGCGCCGAACGCCTTCTCATTTGGAGGA
ACGACATCGACACCTTTTTCGTCGGCCGCTGGAAATACGTCCACCTTTGG
TGCAGCGCCTAGTGTTTCTTCAGCTTTAGGTGCCACTCCCTCATCTATAC
AAACATCGCATGGTGCATCTCCGGGCGCGACAAGCTCAGCAGCGCCACCG
AACGATCAGGGATTCACGGGGGACACTACTTTCTCGTCTTTGCCTCAATA
TATGCAATTGAGGGTGTGGGAGCTGCACAAACTTGTGAGGCAGCACAGAG
AATATGCTGATTCCCTGAACAAATTTACGACGCCAAGTTATAGCTTGGAT
CGTTTCACGAAGGAGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAA
ACGCAAGACCAACCGTTTGATGATACGAAGTCCACAAGAGCAACTTCGAC
AAAGCATTGGCCTGTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCT
CCACTCGCTCAGCCAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTT
ACCTTCAACTTCCGCGTCAAATACCATGTAAAGAATTCACTCCTGACCAG
TTGGCGACCCTCATTCGACTCCAAAATGATGCACTTCTCAAAGTGGCTGC
CCAGGTTGCTGTTGTACATGAGATGGTCGAGCGGCTGCGCAGCGAATGGA
ACTCACGTACAGGTCAAGACCCATTTCAGAGGCTGAAGCTGGATATATTG
CGAGTGCAAAATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCG
AAAGCAAGTCGAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAG
AAAATGGAGCCCTGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACT
TTGCGGCAATCACAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGAT
ACAGTGCGAGGCGCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTT
ACCACAAGGTGGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGG
GGTCTATCAAGATGTCTTTCGGCAGCGCTGCGCCGAACGCCTTCTCATTT
GGAGGAACGACATCGACACCTTTTTCGTCGGCCGCTGGAAATACGTCCAC
CTTTGGTGCAGCGCCTAGTGTTTCTTCAGCTTTAGGTGCCACTCCCTCAT
CTATACAAACATCGCATGGTGCATCTCCGGGCGCGACAAGCTCAGCAGCG
CCACCGAACGATCAGGGATTCACGGGGGACACTACTTTCTCGTCTTTGCC
TCAATATATGCAATTGAGGGTGTGGGAGCTGCACAAACTTGTGAGGCAGC
ACAGAGAATATGCTGATTCCCTGAACAAATTTACGACGCCAAGTTATAGC
TTGGATCGTTTCACGAAGGAGATGGATCGCCTCGCAGCGCAGAATGAAGA
ACGAAAACGCAAGACCAACCGTTTGATGATACGAAGTCCACAAGAGCAAC
TTCGACAAAGCATTGGCCTGTCGCAAACGTCCATCGCCCCTAGTTTCACC
TCTCCTCCACTCGCTCAGCCAGCTTCAAACACTTCGGCTGGTTTCTCTTC
CTTTTTACCTTCAACTTCCGCGTCAAATACCATGTAAAGAATTCACTCCT
GACCAGTTGGCGACCCTCATTCGACTCCAAAATGATGCACTTCTCAAAGT
GGCTGCCCAGGTTGCTGTTGTACATGAGATGGTCGAGCGGCTGCGCAGCG
AATGGAACTCACGTACAGGTCAAGACCCATTTCAGAGGCTGAAGCTGGAT
ATATTGCGAGTGCAAAATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGA
ATTGCGAAAGCAAGTCGAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAG
CAGCAGAAAATGGAGCCCTGCAATACGGTACACCAAGAGCGGCCGGTGTG
GAAACTTTGCGGCAATCACAACAAAGTCATGCTAGTATTTTGAAAGAAAT
AGCGATACAGTGCGAGGCGCGGCTGCAAGAGTACGACGCACACATTCAGG
AGCTTTACCACAAGGTGGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGA
TTCGGGGGTCTATCAAGATGTCTTTCGGCAGCGCTGCGCCGAACGCCTTC
TCATTTGGAGGAACGACATCGACACCTTTTTCGTCGGCCGCTGGAAATAC
GTCCACCTTTGGTGCAGCGCCTAGTGTTTCTTCAGCTTTAGGTGCCACTC
CCTCATCTATACAAACATCGCATGGTGCATCTCCGGGCGCGACAAGCTCA
GCAGCGCCACCGAACGATCAGGGATTCACGGGGGACACTACTTTCTCGTC
TTTGCCTCAATATATGCAATTGAGGGTGTGGGAGCTGCACAAACTTGTGA
GGCAGCACAGAGAATATGCTGATTCCCTGAACAAATTTACGACGCCAAGT
TATAGCTTGGATCGTTTCACGAAG back to top
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