EWM28240.1, cds2508 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|585110585|gb|EWM28240.1| (hypothetical protein Naga_100004g159 [Nannochloropsis gaditana]) HSP 1 Score: 717.227 bits (1850), Expect = 0.000e+0 Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query: 1 MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 351
MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM
Sbjct: 1 MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 351
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|585110586|gb|EWM28241.1| (hypothetical protein Naga_100004g159 [Nannochloropsis gaditana]) HSP 1 Score: 473.011 bits (1216), Expect = 1.981e-166 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
Query: 119 KRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 351
+RLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM
Sbjct: 18 QRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 250
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|813103336|ref|XP_012194100.1| (hypothetical protein SPRG_18886 [Saprolegnia parasitica CBS 223.65] >gi|641541995|gb|KDO35740.1| hypothetical protein SPRG_18886 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 75.0998 bits (183), Expect = 2.873e-11 Identity = 79/324 (24.38%), Postives = 134/324 (41.36%), Query Frame = 0
Query: 11 FSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYS-LDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQ----------------CEARLQEYDAHIQELYHKVVASRTVGGS-DGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSR---------TGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQL 307
FSFG T +TP +S T +FG+ P+ + +LG GA+PG N + + DT F LP +Q ++ E V++ S+ ++ + L T L+ L +QN HA S L+ V+ L V + Q+H + E IQ E+RL + + +++ ++ ++ S D + TP L ++ QN+A ++ AA+VA VHE + LR ++ SR ++PF+ DR+ Q EE +R +R+ + + Q L
Sbjct: 132 FSFGNTAATPSTS----TFSFGSTPTAAPSLG---------FGAAPG--------NTKAISLDTRFEDLPADVQKQLIEFGTFVKEQSREEASIRAVSSAKLTQLKESTTHLEQAALVLQNIHARQSKNIGALKTDVKDL------------------------VAQAESADQTHLHMTSETGIQRHEPMPSPYYWSLVQHFESRLATLKSQMTDVHSQLQGAKHEDVSMDANEASTAHVTPRMLQETLQSQNEAFMRAAARVADVHERADTLRDQYLSRQQAAPHGFGLARNPFEAADRV--QAEEERRIVDRIRLSAAQSTL 408
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|669143274|ref|XP_008607199.1| (hypothetical protein SDRG_03345 [Saprolegnia diclina VS20] >gi|530740896|gb|EQC39138.1| hypothetical protein SDRG_03345 [Saprolegnia diclina VS20]) HSP 1 Score: 73.1738 bits (178), Expect = 1.380e-10 Identity = 89/355 (25.07%), Postives = 145/355 (40.85%), Query Frame = 0
Query: 1 MSFGSA------APNAFSFGGTTSTPFSSAAGNTSTFGAAPSVS-----------SALGATPSSIQTSHGASPGATSS----AAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYS-LDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQ----------------CEARLQEYDAHIQELYHKVVASRTVGGS-DGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTG---------QDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQL 307
SFG A A FSFGG+ +TP ++ G + FG A S + A PS+ S G++P AT S AAP N + + DT F LP +Q ++ E V++ S+ ++ + L T L+ L +QN HA + L+ V+ L V + Q+H + E IQ E+RL + +++ ++ ++ S D + TP L ++ QN+A ++ AA+VA VHE + LR ++ SR ++PF+ DR+ Q EE +R +R+ + + Q L
Sbjct: 111 FSFGGASATPAPASTGFSFGGSNTTPAPASTGFS--FGGASSTPAAAPASTGFNFGSTAAAPSTSSFSFGSAPAATPSLGFGAAPGNTKAISLDTRFEDLPADVQKQLIEFGTFVKEQSREEASIRAVSSAKLTQLKESTTHLEQAALVLQNIHARQAKNIGALKTDVKDL------------------------VVQAESADQTHLHMTSETGIQRHEPMPSPYYWSLVQHFESRLATLKGQMTDVHSQLQGAKHDDVSMDADEASTVHMTPRVLQETLQSQNEAFMRAAARVADVHERADTLRDQYLSRQQAAPHGFGLVRNPFEAADRV--QAEEERRIVDRIRLSAAQSTL 437
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|698823289|ref|XP_009844673.1| (hypothetical protein H257_17550 [Aphanomyces astaci] >gi|574100226|gb|ETV65810.1| hypothetical protein H257_17550 [Aphanomyces astaci]) HSP 1 Score: 65.4698 bits (158), Expect = 4.176e-8 Identity = 81/328 (24.70%), Postives = 137/328 (41.77%), Query Frame = 0
Query: 3 FGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQT--SHGASPG---ATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWEL-HKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHA----EISLVASELRKQVEQLRGFTQ-KLQAAENGALQYGTPRAAG-----VETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEW----------NSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQ 304
F + A NAFSFGG T+T ++ + FG + + ++L P++ S GA G A ++ A P + D F +LP +Q ++ + H L Q RE A + P L TK+L+ L V+N +I L+ S+++ V Q Q + + +Q + V+ Q Q+ + ++ Q + Q H+Q TP L +++ QNDA + +AA VA HE E LR ++ + ++PF+ DR+ Q EE +R +R+ + + Q
Sbjct: 110 FAAPASNAFSFGGGTNTTAAAPSTGFGGFGTSSNTQTSLFGKPATSGGFGSFGAPSGFGVAAATPAQPPQPVVSLDMRFDALPPDVQTQIKDFDHFLKEQSREEASIRSVSAQPLADLQDATKQLEQVALVVRNIQTRQAKDIQLLKSDVKNVVSQAEAADQIHIHLTSDTGIQRTDEMPSAYYWTLVQDFEQRMQTLKCQMNDVHTQLQGLQQTRHPHMQHP-----------------------TPQLLQQILQSQNDAFMNIAAHVATTHEQAEVLRDQYLATLQHKQQPDGGKVRNPFEAADRI--QAEEERRIVDRIRLSAAQ 412
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|1173953773|gb|OQS01288.1| (nucleoporin p58/p45 isoform 1 [Achlya hypogyna]) HSP 1 Score: 63.5438 bits (153), Expect = 1.987e-7 Identity = 88/357 (24.65%), Postives = 145/357 (40.62%), Query Frame = 0
Query: 4 GSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHG------ASPGATSSA------------APPNDQ-------------GFTG---------------DTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYS-LDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQ-CEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEW--------NSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQ 304
G+ A FSFGG STP ++A G T++ G + SS A P+S S G A+P +TSS APP G G DT F LP ++ ++ E +++ ++ ++ + L T +L L +QN HA + L+ V+ L + + A+ L ET Q + S +Q EARL + + E++ ++ + +D G TP L ++ QN+A ++ AA+VA VHE + LR ++ N ++PF+ DR+ Q EE +R +R+ + + Q
Sbjct: 102 GAPASTGFSFGG--STPAAAAPGTTTSTGFSFGGSSTPAAAPASSGFSFGGASTTTAAPASTSSGFNFGGFGSSTNNAPPATGGFGGFGTTPAPTTGLGGFGAAPAASTTKPIALDTRFEDLPADVRKQLIEFGAFIKEQSREEAAIKAVSSEKLTRLKESTTQLMQASLVLQNIHARQAKNIGALKTDVKDL---VAQAEVADQTHLHMT------CETGIQRHEPMPSPYYWSLVQHFEARLAALKSQMSEVHSQLQGPKVE--NDAMGDEPVRVTPRVLQETLQAQNEAFMRAAARVADVHERADALRDQYLSQQQPSANGLGVRNPFEAADRV--QAEEERRIVDRIRLSAAQ 443 The following BLAST results are available for this feature:
BLAST of EWM28240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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