EWM28240.1, cds2508 (CDS) Nannochloropsis gaditana

Overview
NameEWM28240.1
Unique Namecds2508
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:560301..560657 -
Alignment locationCM002459.1:559679..560010 -
Alignment locationCM002459.1:559444..559591 -
Alignment locationCM002459.1:559091..559309 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28240.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g159.9171.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:560301..560657 -
CM002459.1supercontigCM002459.1:559679..560010 -
CM002459.1supercontigCM002459.1:559444..559591 -
CM002459.1supercontigCM002459.1:559091..559309 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005635nuclear envelope
Homology
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|585110585|gb|EWM28240.1| (hypothetical protein Naga_100004g159 [Nannochloropsis gaditana])

HSP 1 Score: 717.227 bits (1850), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 351
            MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM
Sbjct:    1 MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 351          
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|585110586|gb|EWM28241.1| (hypothetical protein Naga_100004g159 [Nannochloropsis gaditana])

HSP 1 Score: 473.011 bits (1216), Expect = 1.981e-166
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
Query:  119 KRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 351
            +RLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM
Sbjct:   18 QRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 250          
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|813103336|ref|XP_012194100.1| (hypothetical protein SPRG_18886 [Saprolegnia parasitica CBS 223.65] >gi|641541995|gb|KDO35740.1| hypothetical protein SPRG_18886 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.0998 bits (183), Expect = 2.873e-11
Identity = 79/324 (24.38%), Postives = 134/324 (41.36%), Query Frame = 0
Query:   11 FSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHGASPGATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYS-LDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQ----------------CEARLQEYDAHIQELYHKVVASRTVGGS-DGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSR---------TGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQL 307
            FSFG T +TP +S    T +FG+ P+ + +LG          GA+PG        N +  + DT F  LP  +Q ++ E    V++      S+   ++   + L   T  L+   L +QN HA  S     L+  V+ L                        V     + Q+H  +  E  IQ                 E+RL    + + +++ ++  ++    S D     +   TP  L   ++ QN+A ++ AA+VA VHE  + LR ++ SR           ++PF+  DR+  Q EE +R  +R+ + + Q  L
Sbjct:  132 FSFGNTAATPSTS----TFSFGSTPTAAPSLG---------FGAAPG--------NTKAISLDTRFEDLPADVQKQLIEFGTFVKEQSREEASIRAVSSAKLTQLKESTTHLEQAALVLQNIHARQSKNIGALKTDVKDL------------------------VAQAESADQTHLHMTSETGIQRHEPMPSPYYWSLVQHFESRLATLKSQMTDVHSQLQGAKHEDVSMDANEASTAHVTPRMLQETLQSQNEAFMRAAARVADVHERADTLRDQYLSRQQAAPHGFGLARNPFEAADRV--QAEEERRIVDRIRLSAAQSTL 408          
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|669143274|ref|XP_008607199.1| (hypothetical protein SDRG_03345 [Saprolegnia diclina VS20] >gi|530740896|gb|EQC39138.1| hypothetical protein SDRG_03345 [Saprolegnia diclina VS20])

HSP 1 Score: 73.1738 bits (178), Expect = 1.380e-10
Identity = 89/355 (25.07%), Postives = 145/355 (40.85%), Query Frame = 0
Query:    1 MSFGSA------APNAFSFGGTTSTPFSSAAGNTSTFGAAPSVS-----------SALGATPSSIQTSHGASPGATSS----AAPPNDQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYS-LDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQ----------------CEARLQEYDAHIQELYHKVVASRTVGGS-DGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTG---------QDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQL 307
             SFG A      A   FSFGG+ +TP  ++ G +  FG A S              +  A PS+   S G++P AT S    AAP N +  + DT F  LP  +Q ++ E    V++      S+   ++   + L   T  L+   L +QN HA  +     L+  V+ L                        V     + Q+H  +  E  IQ                 E+RL      + +++ ++  ++    S D     +   TP  L   ++ QN+A ++ AA+VA VHE  + LR ++ SR           ++PF+  DR+  Q EE +R  +R+ + + Q  L
Sbjct:  111 FSFGGASATPAPASTGFSFGGSNTTPAPASTGFS--FGGASSTPAAAPASTGFNFGSTAAAPSTSSFSFGSAPAATPSLGFGAAPGNTKAISLDTRFEDLPADVQKQLIEFGTFVKEQSREEASIRAVSSAKLTQLKESTTHLEQAALVLQNIHARQAKNIGALKTDVKDL------------------------VVQAESADQTHLHMTSETGIQRHEPMPSPYYWSLVQHFESRLATLKGQMTDVHSQLQGAKHDDVSMDADEASTVHMTPRVLQETLQSQNEAFMRAAARVADVHERADTLRDQYLSRQQAAPHGFGLVRNPFEAADRV--QAEEERRIVDRIRLSAAQSTL 437          
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|698823289|ref|XP_009844673.1| (hypothetical protein H257_17550 [Aphanomyces astaci] >gi|574100226|gb|ETV65810.1| hypothetical protein H257_17550 [Aphanomyces astaci])

HSP 1 Score: 65.4698 bits (158), Expect = 4.176e-8
Identity = 81/328 (24.70%), Postives = 137/328 (41.77%), Query Frame = 0
Query:    3 FGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQT--SHGASPG---ATSSAAPPNDQGFTGDTTFSSLPQYMQLRVWEL-HKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHA----EISLVASELRKQVEQLRGFTQ-KLQAAENGALQYGTPRAAG-----VETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEW----------NSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQ 304
            F + A NAFSFGG T+T  ++ +     FG + +  ++L   P++     S GA  G   A ++ A P     + D  F +LP  +Q ++ +  H L  Q RE A   +    P   L   TK+L+   L V+N       +I L+ S+++  V Q     Q  +    +  +Q      +      V+   Q  Q+    + ++  Q +   Q    H+Q                         TP  L  +++ QNDA + +AA VA  HE  E LR ++          +    ++PF+  DR+  Q EE +R  +R+ + + Q
Sbjct:  110 FAAPASNAFSFGGGTNTTAAAPSTGFGGFGTSSNTQTSLFGKPATSGGFGSFGAPSGFGVAAATPAQPPQPVVSLDMRFDALPPDVQTQIKDFDHFLKEQSREEASIRSVSAQPLADLQDATKQLEQVALVVRNIQTRQAKDIQLLKSDVKNVVSQAEAADQIHIHLTSDTGIQRTDEMPSAYYWTLVQDFEQRMQTLKCQMNDVHTQLQGLQQTRHPHMQHP-----------------------TPQLLQQILQSQNDAFMNIAAHVATTHEQAEVLRDQYLATLQHKQQPDGGKVRNPFEAADRI--QAEEERRIVDRIRLSAAQ 412          
BLAST of EWM28240.1 vs. NCBI_GenBank
Match: gi|1173953773|gb|OQS01288.1| (nucleoporin p58/p45 isoform 1 [Achlya hypogyna])

HSP 1 Score: 63.5438 bits (153), Expect = 1.987e-7
Identity = 88/357 (24.65%), Postives = 145/357 (40.62%), Query Frame = 0
Query:    4 GSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSVSSALGATPSSIQTSHG------ASPGATSSA------------APPNDQ-------------GFTG---------------DTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYS-LDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQ-CEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEW--------NSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQ 304
            G+ A   FSFGG  STP ++A G T++ G +   SS   A P+S   S G      A+P +TSS             APP                G  G               DT F  LP  ++ ++ E    +++      ++   ++   + L   T +L    L +QN HA  +     L+  V+ L     + + A+   L          ET  Q  +   S      +Q  EARL    + + E++ ++   +    +D  G      TP  L   ++ QN+A ++ AA+VA VHE  + LR ++        N    ++PF+  DR+  Q EE +R  +R+ + + Q
Sbjct:  102 GAPASTGFSFGG--STPAAAAPGTTTSTGFSFGGSSTPAAAPASSGFSFGGASTTTAAPASTSSGFNFGGFGSSTNNAPPATGGFGGFGTTPAPTTGLGGFGAAPAASTTKPIALDTRFEDLPADVRKQLIEFGAFIKEQSREEAAIKAVSSEKLTRLKESTTQLMQASLVLQNIHARQAKNIGALKTDVKDL---VAQAEVADQTHLHMT------CETGIQRHEPMPSPYYWSLVQHFEARLAALKSQMSEVHSQLQGPKVE--NDAMGDEPVRVTPRVLQETLQAQNEAFMRAAARVADVHERADALRDQYLSQQQPSANGLGVRNPFEAADRV--QAEEERRIVDRIRLSAAQ 443          
The following BLAST results are available for this feature:
BLAST of EWM28240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585110585|gb|EWM28240.1|0.000e+0100.00hypothetical protein Naga_100004g159 [Nannochlorop... [more]
gi|585110586|gb|EWM28241.1|1.981e-16699.57hypothetical protein Naga_100004g159 [Nannochlorop... [more]
gi|813103336|ref|XP_012194100.1|2.873e-1124.38hypothetical protein SPRG_18886 [Saprolegnia paras... [more]
gi|669143274|ref|XP_008607199.1|1.380e-1025.07hypothetical protein SDRG_03345 [Saprolegnia dicli... [more]
gi|698823289|ref|XP_009844673.1|4.176e-824.70hypothetical protein H257_17550 [Aphanomyces astac... [more]
gi|1173953773|gb|OQS01288.1|1.987e-724.65nucleoporin p58/p45 isoform 1 [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2516rna2516Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications