rna2515, rna2515 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2515
Unique Name	rna2515
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1479
Alignment location	CM002459.1:558300..561029 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g159.9172.mrna
Orig protein id	gnl\|cribi\|Naga_100004g159.9172
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:558300..561029 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g159	gene2404	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2515	rna2515-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28241.1	cds2507	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:558300..561029-
coding sequence from alignment at CM002459.1:558300..561029-

mRNA sequence

>rna2515 ID=rna2515|Name=rna2515|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp
AACACAGGCTTTTCAAGCTCAGCATGTCGGATGCCAGTAAGGAAGTCCTC
GCGCCTCCATCCGGAAGCGGCGGTCCTGTCATGAGGGACGAGGGGACGTG
CGGAAAGGGAAAGGAGGAAAAGGAAAACGCCGAAAGTCGGGAGACGTCGG
AGGTCAAGAAGACTGAAGAAGAAGGAGAGGAAGAAGACATCGATGATGAC
GCTTTGGAGGACGAGGGTAGCGCAGGCGGAGACGTCAGTGGTGGTAAAGA
CGTCGAAGTGGAAGGTGAGGACGACATCGATAGCGAGGAGAAGGAGGCAG
CTCTGCGAGCAGCTCTCGTGGTGGGAATGCCGGAGGACCAGAAAGCACGG
CTGAAGCAAGTCGTTTGGGCAAAGAGTGCGGGCTTCTCTCACTGGCCTGG
TTTTATCTATCATCCCGCTGACGTCAGGGATGACCTGCGTAGAAGCTGCT
ACTCCAGTGCAAAGGCCAAGGAGGGTCCCAGGACGCATCACATAATCTTC
TATTATAATTACGGACCAAATGCTTTCGACTCAGTGCCCTTCAAGAACAT
CGAGCCCTGGACGAAGGAGAGCAAGGAGGCTTTCGCAAAGGCGTCGAAAC
GGTTCAAGGACAAAATTCCGGAGGCCATTAATTTAGCAGAGGAGGATGCT
GCCAGACCGATGGCAGAGCGATCCCCGGGGCCGCTGGACTTGAAGAGTGT
GAGAGAGCGTGCTCGTGAAGAAGTGAAGCAAAGTGGACAAGGAGGGCAAA
ATGCCCTACGAAAGGGAACGTCGAACAAGCAACAGTCTTTTTTGACATCG
GAAAAGTCGCGGATAAATGAGACGCACGAAGCTTTGAAAGGAAAGAAAAA
GAAGCGTTTGCACGCGGATGATGAAATTTCCGGGGCACGCCCATCTGGAG
GAGCTGCCCAGGGGGTTAAGAAGTGGAAGAAAGATTTTGAGCGGGAAAGC
GAAAAAGACCGATTCAATCGCTTATCCCGCAACCTTCAAATCATGCTGGA
GGATGAGATTTTGAACGTGCCAAAGATCTGCAGCACTTTGGAGAAGCTCT
CTGCTATGACGGTAACCATCGAGCAGCTGACAGAAAGTGGCGTAGGACAG
GTTGTTAAAGGTCTACGTAAACATGCACAGTCAGAGATTCAAGTGCAAGC
GAAGGCAGCTTTTTCTCGTTGGAAAGAGAATTTCAAACAAGAGATCAAAA
TGGCCCCCGAGCCTGCCGTCCCTGGAGATGTTAATTTGGAAAGGAAAAGA
CAAGAAGCGCATGATCCGAAGGAGGACAAAATAGAAAGTCAGAAGCCGGA
TGCGCAATCATACACGCCAACTGCATCAACGAATGCAGAAACTACCTCTT
CAGGTACCTCTTCTGGCCTTGAGGGGTAGAAGTGACAGGATTCATGGAGA
GAAGGACATGGACGGGTTGCTCGGTAGACTAATTGCTGTGATAGATGATG
CAAAAAGAAGTGTGCAAACATCGCTTACT

protein sequence of rna2515

>rna2515-protein ID=rna2515-protein|Name=rna2515|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MVHTLTLSLPCPLNYRGQRLKLDILRVQNSHAEISLVASELRKQVEQLRG
FTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQE
YDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKV
AAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIR
SPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM

mRNA from alignment at CM002459.1:558300..561029-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2515 ID=rna2515|Name=rna2515|organism=Nannochloropsis gaditana|type=mRNA|length=2730bp|location=Sequence derived from alignment at CM002459.1:558300..561029- (Nannochloropsis gaditana)
GCGCGGAAACCCTCGCTTTCAATGCCTCCCCGTCGCAGCGTCCTGAGAGC
TACCGTGCTCCCGACAGGGTAACCTGGAGAACTGCCCCCTCAATACGTGC
ATGATAGCTTTTCATCCTCTGTTTCAATCTCGTGGTTAACATATGCCGTG
TAGTTACTCCGTTCCCGGCCTTCAGCCCGGGGCCCGAAAAATATTATGCC
GGTGCAGAAGCAGCGGATGCCTGGCCGGTCTTATTTGCTCTAGCGGCAAC
GCTGAGCTTTTTAAAGAACGAAGAACCTCGAGGATTGCTGAGGCAGTAAG
TTTTTGTTGTGGCCTTCTCATTGTGATGCCGACTTTTGCCAACATCATGC
AGACAGCTTAAATCATAGGGGAATGTCTTTCGGCAGCGCTGCGCCGAACG
CCTTCTCATTTGGAGGAACGACATCGACACCTTTTTCGTCGGCCGCTGGA
AATACGTCCACCTTTGGTGCAGCGCCTAGTGTTTCTTCAGCTTTAGGTGC
CACTCCCTCATCTATACAAACATCGCATGGTGCATCTCCGGGCGCGACAA
GCTCAGCAGCGCCACCGAACGATCAGGGATTCACGGGGGACACTACTTTC
TCGTCTTTGCCTCAATATATGCAATTGAGGGTGTGGGAGCTGCACAAACT
TGTGAGGCAGCACAGAGAATATGCTGATTCCCTGAACAAATTTACGACGC
CAAGTTATAGCTTGGATCGTTTCACGAAGGTACGTCAGAATCAAGACGTG
GGCGATAGAAGGGAAAAATGCAAGAGGGACAAGCAATCTTTTGATTACAA
CCGCTCGTGTCTAGAGAAACATTTCTAGTATGTTTTTTTGGAGTTGACTG
TAGCTTGAAATATGTCGTGCTCTTTGATGCCGATATCACTCAGTCCTCTT
GATGTTTGCGTGCCATAGCCTCCAGCTATAATGGTTAATCATCTGCTTCT
TTGTGTGGAGGTTTCATGGTACATACATTAACCTTGAGTCTACCATGTCC
TTTAAATTACCGTGGACAGAGGCTGAAGCTGGATATATTGCGAGTGCAAA
ATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCGAAAGCAAGTC
GAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAGAAAATGGAGC
CCTGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACTTTGCGGCAAT
CACAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGATACAGTGCGAG
GCGCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTTACCACAAGGT
GGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGGGGTCTATCAA
GGTAGATTCGGGTACCCTTTCCGTCTTACTGCGAGGCAAGAATGTGCTTC
AGCAGGTTTACTTATTGCATCTCTCAATACTGCGACAGAGAATTCACTCC
TGACCAGTTGGCGACCCTCATTCGACTCCAAAATGATGCACTTCTCAAAG
TGGCTGCCCAGGTTGCTGTTGTACATGAGATGGTCGAGCGGCTGCGCAGC
GAATGGAACTCACGTACAGGTCAAGACCCATTTCAGGTACAAAAGAAAAG
GAGGATGGGTGGGAGTCAATTTTTCAAGCCTTTCGGTCTTGAGCGTGGTG
AGGTCGAGGACTTCTGTCGGCCTTGTGTCTAACGTACGTCATTTCGATCT
TGCGTGACTTCCATCATCAGGAGATGGATCGCCTCGCAGCGCAGAATGAA
GAACGAAAACGCAAGACCAACCGTTTGATGATACGAAGTCCACAAGAGCA
ACTTCGACAAAGCATTGGCCTGTCGCAAACGTCCATCGCCCCTAGTTTCA
CCTCTCCTCCACTCGCTCAGCCAGCTTCAAACACTTCGGCTGGTTTCTCT
TCCTTTTTACCTTCAACTTCCGCGTCAAATACCATGTAAGTGATAAGTTA
CTAGTCGTGTGCATTGTTATCAAAGTACTGATTTTCTTGTTCCTGTAACT
TGTAGCACATCAGGGACTGGCGCCGGAACATTTAATCCTCTCGCTTATTC
TAGTCAAGATGCAGTCGACAGGTCAGAGAAATCTGCCAAGACAAAAGCAC
GACGATAAATTAATGCTTAAATGCGCGATCTCGAGATAAATTTCGTTTCA
AAACCGGTGTATTTGGTTTTCCATTATTTCTCTGTTTCTTACATATCACT
CATTTCGGTTCATCACCACGCCGCGTCCCACATTCTTTTCCCTCTGCTTC
TCGACTGCATGTATGAAGCGCGTATAGAATGCTGAGCTTCCATCCTCAAA
GGCCATCAATGGCACACAAATGTGAAGTTTGGTTTGACGTGAATGCACGC
ATAGCGTTTTCTTCTTTTGTTAAAAGCTCAATCCGCCTCGTTCTTTACAT
CCTCGGTATGTGTGGACGTGATGCTGATGGACGTGCGTCCAAACGGAAAG
AGGGGAAAGGCTACATGGCAACGACGACTGTTAATTTGTCCAGTAAGTAA
AAAGAACTATCTGACAAAAGAGAAAGATATTTACTTGTCAGCTACTCCTA
TAAAACTGAGCTCTTTGCAACATACGTTCTCCATTTTGTCCTCAACCGCA
TGCGACGGGTGTGAAGATATCTCCCAAGGAAATTGATGACAAAGGGAGGC
ATTTCCATGATGTAGGGATCCCTCCCTGAGACATGAAGGCTCACAGCCCA
AAAATCAAAGAAGAGATTTAAAGCAAGAGA

Coding sequence (CDS) from alignment at CM002459.1:558300..561029-

>rna2515 ID=rna2515|Name=rna2515|organism=Nannochloropsis gaditana|type=CDS|length=2259bp|location=Sequence derived from alignment at CM002459.1:558300..561029- (Nannochloropsis gaditana)
GAGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAAACGCAAGACCAA
CCGTTTGATGATACGAAGTCCACAAGAGCAACTTCGACAAAGCATTGGCC
TGTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCTCCACTCGCTCAG
CCAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTTACCTTCAACTTC
CGCGTCAAATACCATGTAAAGAATTCACTCCTGACCAGTTGGCGACCCTC
ATTCGACTCCAAAATGATGCACTTCTCAAAGTGGCTGCCCAGGTTGCTGT
TGTACATGAGATGGTCGAGCGGCTGCGCAGCGAATGGAACTCACGTACAG
GTCAAGACCCATTTCAGATGGTACATACATTAACCTTGAGTCTACCATGT
CCTTTAAATTACCGTGGACAGAGGCTGAAGCTGGATATATTGCGAGTGCA
AAATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCGAAAGCAAG
TCGAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAGAAAATGGA
GCCCTGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACTTTGCGGCA
ATCACAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGATACAGTGCG
AGGCGCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTTACCACAAG
GTGGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGGGGTCTATC
AAGGAGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAAACGCAAGAC
CAACCGTTTGATGATACGAAGTCCACAAGAGCAACTTCGACAAAGCATTG
GCCTGTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCTCCACTCGCT
CAGCCAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTTACCTTCAAC
TTCCGCGTCAAATACCATGTAAAGAATTCACTCCTGACCAGTTGGCGACC
CTCATTCGACTCCAAAATGATGCACTTCTCAAAGTGGCTGCCCAGGTTGC
TGTTGTACATGAGATGGTCGAGCGGCTGCGCAGCGAATGGAACTCACGTA
CAGGTCAAGACCCATTTCAGATGGTACATACATTAACCTTGAGTCTACCA
TGTCCTTTAAATTACCGTGGACAGAGGCTGAAGCTGGATATATTGCGAGT
GCAAAATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCGAAAGC
AAGTCGAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAGAAAAT
GGAGCCCTGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACTTTGCG
GCAATCACAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGATACAGT
GCGAGGCGCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTTACCAC
AAGGTGGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGGGGTCT
ATCAAGGAGATGGATCGCCTCGCAGCGCAGAATGAAGAACGAAAACGCAA
GACCAACCGTTTGATGATACGAAGTCCACAAGAGCAACTTCGACAAAGCA
TTGGCCTGTCGCAAACGTCCATCGCCCCTAGTTTCACCTCTCCTCCACTC
GCTCAGCCAGCTTCAAACACTTCGGCTGGTTTCTCTTCCTTTTTACCTTC
AACTTCCGCGTCAAATACCATGTAAAGAATTCACTCCTGACCAGTTGGCG
ACCCTCATTCGACTCCAAAATGATGCACTTCTCAAAGTGGCTGCCCAGGT
TGCTGTTGTACATGAGATGGTCGAGCGGCTGCGCAGCGAATGGAACTCAC
GTACAGGTCAAGACCCATTTCAGATGGTACATACATTAACCTTGAGTCTA
CCATGTCCTTTAAATTACCGTGGACAGAGGCTGAAGCTGGATATATTGCG
AGTGCAAAATTCGCATGCGGAGATTTCCCTTGTTGCAAGCGAATTGCGAA
AGCAAGTCGAGCAATTGCGGGGTTTCACTCAGAAGCTCCAAGCAGCAGAA
AATGGAGCCCTGCAATACGGTACACCAAGAGCGGCCGGTGTGGAAACTTT
GCGGCAATCACAACAAAGTCATGCTAGTATTTTGAAAGAAATAGCGATAC
AGTGCGAGGCGCGGCTGCAAGAGTACGACGCACACATTCAGGAGCTTTAC
CACAAGGTGGTTGCGAGTCGGACTGTGGGCGGCAGCGATGGATTCGGGGG
TCTATCAAG

Synonyms

Publications