EWM28241.1, cds2507 (CDS) Nannochloropsis gaditana

Overview
NameEWM28241.1
Unique Namecds2507
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:559679..560064 -
Alignment locationCM002459.1:559444..559591 -
Alignment locationCM002459.1:559091..559309 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28241.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g159.9172.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:559679..560064 -
CM002459.1supercontigCM002459.1:559444..559591 -
CM002459.1supercontigCM002459.1:559091..559309 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005635nuclear envelope
Homology
[Close]
BLAST of EWM28241.1 vs. NCBI_GenBank
Match: gi|585110586|gb|EWM28241.1| (hypothetical protein Naga_100004g159 [Nannochloropsis gaditana])

HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 
Query:    1 MVHTLTLSLPCPLNYRGQRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 250
            MVHTLTLSLPCPLNYRGQRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM
Sbjct:    1 MVHTLTLSLPCPLNYRGQRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 250
[Close]
BLAST of EWM28241.1 vs. NCBI_GenBank
Match: gi|585110585|gb|EWM28240.1| (hypothetical protein Naga_100004g159 [Nannochloropsis gaditana])

HSP 1 Score: 473.011 bits (1216), Expect = 1.411e-166
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 
Query:   18 QRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 250
            +RLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM
Sbjct:  119 KRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVGGSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQSIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNTM 351
The following BLAST results are available for this feature:
BLAST of EWM28241.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110586|gb|EWM28241.1|0.000e+0100.00hypothetical protein Naga_100004g159 [Nannochlorop... [more]
gi|585110585|gb|EWM28240.1|1.411e-16699.57hypothetical protein Naga_100004g159 [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2515rna2515Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications