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Properties
| Property Name | Value |
|---|
| Product | protein tyrosine phosphatase type iva protein 1 |
| Orig transcript id | gnl|cribi|Naga_100004g15.9155.mrna |
| Orig protein id | gnl|cribi|Naga_100004g15.9155 |
| Gene | PTP |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:257575..259422 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2384 ID=rna2384|Name=rna2384|organism=Nannochloropsis gaditana|type=mRNA|length=1708bp
TGTGCAACTGACAGAAACATTATGAGGTATTTTTCTACGTTGGATTTTTG
AAGGGAGGTCTTGGTGTTAATGCATAGATTTTAAATTCAGACTAGGAGTT
CCGTTTTGCCACCCCCACAGGAGACGTAGTATCCACACAGCATGGCAGGG
AAGCCTAAATGTGTACTTGCCTACAGTGGTGGATTGGACACGTCTGTCAT
CCTCGTTTGGCTCATTGAGAAGGGATTTGATGTGATTTGCTACTGCGCGA
ACGTAGGCCAGCTGAAAGAGGATTTCGACAAAGTTCGTGAAAAGGCCTTG
AAATGCGGGGCATCCAAGGTGTATATCGAGGATCTTCGAGAGGAGTTTGT
GAAGGACTATGTATTCTGGGCGGTGAAGGCCAACGCCCAATATGAAGGAC
GCTACCTTCTGGGCACCTCCCTGGCCCGACCCGTCATTGCCAAGCGGCAG
GTGGAGATCGCGCAGAAGGAGGGTGCCAAGTGGCTATCCCACGGGGCGAC
TGGCAAAGGGAACGACCAGGTGCGGTTCGAGCTGTGTGCCCAAGCTTTGG
ACGCAGCCATCCAGACGCTGGCCCCGTGGCGCGAGACGGAGTTTATCGAG
CGATTCAAAGGACGCCAGGACCTCCTTGACTACGCGGCGGCCCACAATAT
TCAGGTGGAGGCCACCAAAAAGGCCTCCTATTCGGTGGATGAGAACCTTT
ACCACACCTCCTACGAGAGCGGCATGCTGGAGGATCCGATGGTCCCTCCC
CTCAAGGAGATGTTCAAGATGACTGTGGACCCGGAGGACGCGCCTGACAA
GGCCGAGAAGGTTCGGATCGACTTCGAAGAGGGCGTGCCTGTCAAGGTGA
CGAACCACGACGACGGAACCGTGAAGACGGAGCCGCTGGAATTGTTCCTG
TACTTGAATGAGCTGGCGGGAAAGCATGGGGTAGGGCGCATCGATATCGT
GGAGAACCGCTTTGTGGGGATTAAGAGCCGTGGCGTGTACGAGACCCCCG
GGGGCCAGATTTTGCGGGTGGCCCATATGGACCTTGAGGGTCTTTGTGTG
GACCGGGAGGTCTTGCGTTTGAAGGAAGGGCACCAGCTGGAATTTTCTCG
TCTGTGCTACAACGGCTTTTGGTTTGCGCCGGAAATGGAGCTGACCAAGG
CGAGCATTGATTTCACCCAAAGGCGCGTCGCTGGGGGGGTGGAGCTGTCG
CTGTACAAGGGAAACGTTACTGTGCTGGGGCGAGAAAGCCCGTACTCTCT
GTACTCGGCAGACCTGGCCAGCATGGAAATTGAGGGCGGCGGAGCAGCTT
TCGATTACGTCCCTATGGACGCACAAGGCTTTATCCGCATCAATGCAGTC
CGGCTCCGAGCGTACAATGCGCTAGAACGCACCTTCAACAAATGAGATGG
TTGGCAAGACATAGAAGAAGAACTCAATTAATTGCAATAACGCTGTGCGT
ATTTGATGAGGCCGAAGTGGAAAAGTGGGGCGTTCGACAGGCGAGAAGTG
CTCGGGTAAGAGTAATTCATTTTTTTTGAGAGGTCAGGGCTAATTTTGGT
GTGCAAGGACGGCAGAAACGAGGTGTCATTGCACGCAATTTTTCCGGTGC
GTCCCGAAAGTAACTGAAACTTACGTATGATTCCAATATAAGGGAAAGTA
GTGAGAGCGAGTTCCTCGACAGAGCATTGCTGGGTTTTCTGAAAATGTAT
GAAGGTGT back to topprotein sequence of rna2384 >rna2384-protein ID=rna2384-protein|Name=rna2384|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MAPPQSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLS
HYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVI
DRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSH
QGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASA
VVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM back to topmRNA from alignment at CM002459.1:257575..259422+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2384 ID=rna2384|Name=rna2384|organism=Nannochloropsis gaditana|type=mRNA|length=1848bp|location=Sequence derived from alignment at CM002459.1:257575..259422+ (Nannochloropsis gaditana)
GGACGTCGATCCTTCGCCATGCTTCACGTCCGTCTAAGCCGCCAGCGCGT
CAAGCGCACGAAGTTGACTTCAATGACGGAGGCGTTtaagagagagggaa
tgggCTTGGTGTCCTCTTGTCCAGTTTGTTGACTGGCATGTGTTTGCAGA
CTTTTTGGCTAGTTTTGATTCCCTGCCTGGCTGTGGGCAACGCTGCGACG
TCATGCCTCAAGGCGATTCACGGCCCACAGTCGTTGACTTACACTCTACC
GTCCCATATCCCTTTGATTTCTCGTACACAGGTCATTGACTCGGAGGTCA
ACCCGAACAACATCAGCCCTGGCGGCCTTTAGTGTAGGCAGGTGCCTGTG
GACGAAGGAgacatcccctccttctttccgccCGCCCTAGCGCACCGGAA
GGATTGACTCTTTGAGCGGTGGTAGCGGAGGTCACAGCAAGCGACGGGCC
ACAATCATTGACACCACCTTTAACTGGTCAAAGCTATTTCTAGCTATCTA
TATACCGTAACTCTGGATTCTTCGATAGCAAGACAGCCAGATCCTCTCAG
GCGATCGTCACAGGCTAGCCAAAAACGAACCTTCAACACCACAATCTTGG
CCGAACAGAGATAAAATTCGCAATTCTTCCCATTTTCCTTCAAGCAACAC
CTATATCGACACACAATGGCTCCTCCCCAGTCGGCACCGAAACACTTTTA
CTCCAGCGTGCCTCAAACCTCGGCCATGGCGGTGTTGGCAGGGAAGCCAA
CATTCCTCGCCTGGGGCAAGCTGCGTTTCCTGCTCATGGACGCCCCTCGC
GACTGCAACCTCTCCCACTACATTCGAGAAGCCAAGCGTCATAACGTCAT
TGCCTTGGTGCGTGTGTGTGAGCCCACGTACGACACGGAAGAAGTGGAAG
CCGCGGGCATCCAGGTGTTGGACATGGGCTACGACGACGGCAGCAGCCCG
CCTCAGGACGTGATCGATCGCTGGCTGGCCCTGGTGGACGACGTTTTCAG
CAAGCCGGCGCGGCtcaccccctctctctcgccagCTGCTTCATATCCGG
GTATTCAGTCAGGGAAATCGGGCGTGGCCCTCGCACGTTCCATGTCTTGG
CGCGAGAACTCCCATCAAGGGGCGGCCGCAGCTTCCCCCCAGGAACTGGA
GGAATCGGAAGAGCCAGCACCAACGATTGCCGTGCATTGCGTGGCAGGCC
TTGGGCGAGCTCCTGTTTTGGTCGCCTTGGCTCTGATCGAGCATGGTTTC
GGCGACGCTTCGGCAGTGGTGGAGTTCATTCGCTCGAAACGTCGAGGGGC
CATCAACATGCGGCAGTTGAACTACCTGGAGCAGTACCAGAAAAGAGAGG
CCGTGTCTTGCGGTGGCTGCAGCATTATGTAAGGGAGATGGTGCtgcgag
agagagaaggagtaGTGGGGAGGGCAAAACAGATCATGCGTCGCCAGGCG
GCCACAACGGACTGAATGGATCTGTTTACGGGTTTACATGCCATTGAAGC
CTTTTGTTGCATGGTGGCTGGGAAAGATATTATATGCGTAAGATTTTGGT
AAAGTGCAGAAGAAGAGCGcatgggggagaaggaccaGGCCCCTGGCCGC
CCGGCATGGGGTAgtgaatgaggaggagctcgatgATGTCAAACGCCGAA
GTCAAACAGTCCTTCGTCTGCCAGAGGCTCAAAGCTTGTAGAaagcagaa
gaagaaaaagcttGCAATCATTCTACAGGGCTTGTTCTATAATTTTGATT
TCAAAGGCATATTCACAATCAAAACCATGCTCTCACAATTGAGGTGCTTT
TCGTGATAGGAGCGCTTGTTCCGTCGCATTGATTATTCCCATCTCTCC back to topCoding sequence (CDS) from alignment at CM002459.1:257575..259422+ >rna2384 ID=rna2384|Name=rna2384|organism=Nannochloropsis gaditana|type=CDS|length=717bp|location=Sequence derived from alignment at CM002459.1:257575..259422+ (Nannochloropsis gaditana)
ATGGCTCCTCCCCAGTCGGCACCGAAACACTTTTACTCCAGCGTGCCTCA
AACCTCGGCCATGGCGGTGTTGGCAGGGAAGCCAACATTCCTCGCCTGGG
GCAAGCTGCGTTTCCTGCTCATGGACGCCCCTCGCGACTGCAACCTCTCC
CACTACATTCGAGAAGCCAAGCGTCATAACGTCATTGCCTTGGTGCGTGT
GTGTGAGCCCACGTACGACACGGAAGAAGTGGAAGCCGCGGGCATCCAGG
TGTTGGACATGGGCTACGACGACGGCAGCAGCCCGCCTCAGGACGTGATC
GATCGCTGGCTGGCCCTGGTGGACGACGTTTTCAGCAAGCCGGCGCGGCt
caccccctctctctcgccagCTGCTTCATATCCGGGTATTCAGTCAGGGA
AATCGGGCGTGGCCCTCGCACGTTCCATGTCTTGGCGCGAGAACTCCCAT
CAAGGGGCGGCCGCAGCTTCCCCCCAGGAACTGGAGGAATCGGAAGAGCC
AGCACCAACGATTGCCGTGCATTGCGTGGCAGGCCTTGGGCGAGCTCCTG
TTTTGGTCGCCTTGGCTCTGATCGAGCATGGTTTCGGCGACGCTTCGGCA
GTGGTGGAGTTCATTCGCTCGAAACGTCGAGGGGCCATCAACATGCGGCA
GTTGAACTACCTGGAGCAGTACCAGAAAAGAGAGGCCGTGTCTTGCGGTG
GCTGCAGCATTATGTAA back to top
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