EWM28224.1, cds2376 (CDS) Nannochloropsis gaditana

Overview
NameEWM28224.1
Unique Namecds2376
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:258240..258956 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28224.1
Productprotein tyrosine phosphatase type iva protein 1
Orig transcript idgnl|cribi|Naga_100004g15.9155.mrna
GenePTP
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:258240..258956 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016791phosphatase activity
GO:0004725protein tyrosine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016311dephosphorylation
GO:0006470protein dephosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR000387Tyr/Dual-sp_Pase
IPR029021Prot-tyrosine_phosphatase-like
IPR000242Tyr_Pase_rcpt/non-rcpt
IPR003595Tyr_Pase_cat
Homology
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|553182187|ref|XP_005853694.1| (protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana CCMP526] >gi|422295366|gb|EKU22665.1| protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana CCMP526] >gi|585110569|gb|EWM28224.1| protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 491.886 bits (1265), Expect = 5.812e-176
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MAPPQSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
            MAPPQSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM
Sbjct:    1 MAPPQSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|298706463|emb|CBJ29450.1| (protein tyrosine phosphatase [Ectocarpus siliculosus])

HSP 1 Score: 183.726 bits (465), Expect = 9.896e-55
Identity = 100/235 (42.55%), Postives = 141/235 (60.00%), Query Frame = 0
Query:    5 QSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVS-CGGCSIM 238
            ++AP +  +++ +  A A ++  P+ + W KLRF++MDAP+  NL  YIRE K+ NV+ +VRVCEPTY   EVEAAGI++L+M YDDG +PP ++I++WL +V   F          +P +S P                   N  +G                PTIAVHCVAGLGRAPVLVA+ALIE+G  D    VE+IR +RRGAIN +QL+YL+ Y++R + + C  C +M
Sbjct:   18 RTAPTN--TALGRVEAAATMSAHPSLVEWKKLRFVIMDAPKANNLHLYIRELKKQNVVCVVRVCEPTYPASEVEAAGIKLLEMEYDDGGAPPVEIINKWLDVVQTTFHN--------APDSSGP-------------------NGSEG----------------PTIAVHCVAGLGRAPVLVAIALIEYG-KDPIKAVEYIRDRRRGAINRKQLSYLDSYERRSSGNGCSSCVVM 206          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|695465305|ref|XP_009539147.1| (hypothetical protein PHYSODRAFT_356206 [Phytophthora sojae] >gi|348665787|gb|EGZ05616.1| hypothetical protein PHYSODRAFT_356206 [Phytophthora sojae])

HSP 1 Score: 162.54 bits (410), Expect = 6.010e-47
Identity = 93/214 (43.46%), Postives = 117/214 (54.67%), Query Frame = 0
Query:   25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
              KPT + W  L F++MDAP D NL  Y++E K+HNV  LVR CE TY +E VEAAGI V ++ + DG SP  +++D+WL LV+D F   A              I S  +                                  +IAVHCVAGLGRAPVLVA+ALIE+G    +A VE IR  RRGAIN+RQL YLE+YQ R   +   C+IM
Sbjct:    5 TNKPTMVKWEHLSFVIMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVEDCFKDNA--------------IDSKNNK---------------------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|301114315|ref|XP_002998927.1| (protein tyrosine phosphatase type IVA protein 1 [Phytophthora infestans T30-4] >gi|262111021|gb|EEY69073.1| protein tyrosine phosphatase type IVA protein 1 [Phytophthora infestans T30-4])

HSP 1 Score: 160.614 bits (405), Expect = 3.131e-46
Identity = 91/214 (42.52%), Postives = 116/214 (54.21%), Query Frame = 0
Query:   25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
              KPT + W  L F++MDAP D NL  Y++E K+HNV  LVR CE TY +E VEAAGI V ++ + DG SP  +++D+WL LV+  F                              S+  + N                     +IAVHCVAGLGRAPVLVA+ALIE+G    +A VE IR  RRGAIN+RQL YLE+YQ R   +   C+IM
Sbjct:    5 TNKPTMVKWEHLSFVIMDAPNDSNLHIYLKELKKHNVTELVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVETCFKD---------------------------NSIDSKNNK--------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|1214695993|gb|OWZ09624.1| (Protein tyrosine phosphatase type IVA protein 1 [Phytophthora megakarya])

HSP 1 Score: 160.614 bits (405), Expect = 3.234e-46
Identity = 92/214 (42.99%), Postives = 116/214 (54.21%), Query Frame = 0
Query:   25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
              KPT + W  L F++MDAP D NL  Y++E K+HNV  LVR CE TY +E V AAGI V ++ + DG SP  +++D WL LV+DVF   A                           +  + N                     +IAVHCVAGLGRAPVLVA+ALIE+G    +A VE IR  RRGAIN+RQL YLE+YQ R   +   C+IM
Sbjct:    5 TNKPTMVKWEHLSFVVMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVVAAGIHVHELEFPDGESPDPEILDEWLDLVEDVFKDNA---------------------------IDAKNNK--------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|675210487|ref|XP_008914128.1| (hypothetical protein PPTG_17837 [Phytophthora parasitica INRA-310] >gi|566010354|gb|ETI33265.1| hypothetical protein F443_20048 [Phytophthora parasitica P1569] >gi|567947818|gb|ETK73590.1| hypothetical protein L915_19499 [Phytophthora parasitica] >gi|567976500|gb|ETL27021.1| hypothetical protein L916_19392 [Phytophthora parasitica] >gi|568005985|gb|ETL80262.1| hypothetical protein L917_19234 [Phytophthora parasitica] >gi|568035881|gb|ETM33508.1| hypothetical protein L914_19272 [Phytophthora parasitica] >gi|568085726|gb|ETN00629.1| hypothetical protein PPTG_17837 [Phytophthora parasitica INRA-310] >gi|570314052|gb|ETO62000.1| hypothetical protein F444_20057 [Phytophthora parasitica P1976] >gi|570937819|gb|ETP03076.1| hypothetical protein F441_19922 [Phytophthora parasitica CJ01A1] >gi|570968136|gb|ETP31255.1| hypothetical protein F442_19862 [Phytophthora parasitica P10297] >gi|970633092|gb|KUF78953.1| protein tyrosine phosphatase type IVA A [Phytophthora nicotianae] >gi|970646455|gb|KUF86616.1| Tubulin-specific chaperone C [Phytophthora nicotianae])

HSP 1 Score: 159.844 bits (403), Expect = 5.941e-46
Identity = 92/214 (42.99%), Postives = 116/214 (54.21%), Query Frame = 0
Query:   25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
              KPT + W  L F++MDAP D NL  Y++E K+HNV  LVR CE TY +E VEAAGI V ++ + DG SP  +++D+WL LV+  F   A              I S  +                                  +IAVHCVAGLGRAPVLVA+ALIE+G    +A VE IR  RRGAIN+RQL YLE+YQ R   +   C+IM
Sbjct:    5 TNKPTMVKWEHLSFVIMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVETCFKDNA--------------IDSKNNK---------------------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|1036039043|ref|XP_016944963.1| (PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii] >gi|1036039045|ref|XP_016944964.1| PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii] >gi|1036039047|ref|XP_016944965.1| PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii] >gi|1036039049|ref|XP_016944966.1| PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii])

HSP 1 Score: 157.532 bits (397), Expect = 7.285e-44
Identity = 88/233 (37.77%), Postives = 122/233 (52.36%), Query Frame = 0
Query:   28 PTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYP------------------------GIQSGKSGVALAR-SMSWRENSHQGAAAASP----------QELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQ 225
            P  + +  ++FL+ D P D  ++HYI E K++NV  +VRVCEP+Y+T+E+E  GI V D+ ++DG+ PPQ V+D W  ++ D F K    T S      +                            S  SG A     ++  +N H    AA+           +     + P   +AVHCVAGLGRAPVLVALALIE G     A VE IR KRRGAIN +QL++LE+Y+
Sbjct:   14 PALIEYKGMKFLITDRPSDITINHYITELKKNNVNTVVRVCEPSYNTDELETQGITVKDLAFEDGTFPPQQVVDEWFEVLKDNFRKSTSATLSYYKHKRFSLRHIPKTVPPTTATATAIRTSATRASLSAASGRATDTIPLTANDNLHDNGEAATAIYNNTAFVDNETCRYQQNPEACVAVHCVAGLGRAPVLVALALIELGLK-YEAAVEMIRDKRRGAINAKQLSFLEKYK 245          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|635361706|emb|CCI49389.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 154.066 bits (388), Expect = 1.072e-43
Identity = 93/218 (42.66%), Postives = 114/218 (52.29%), Query Frame = 0
Query:   21 MAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
            M     KPT + W  L F++MDAP + NL  Y++E K++NV  LVR CE TYD E V AAGI V ++ + DG  P  D+  RWL+LV D F K  +  P+LS                                               +IAVHCVAGLGRAPVLVA+ALIE+G    SA VE IR  RRGAIN+RQL YLE+YQ         C+IM
Sbjct:    1 MIAPTNKPTLVQWANLSFVIMDAPTNDNLQFYLKELKKYNVTDLVRACEITYDREAVNAAGINVHELEFPDGEPPDDDIFQRWLSLVADRF-KENQPKPTLSNR---------------------------------------------SIAVHCVAGLGRAPVLVAIALIENGVDPISA-VEHIRKFRRGAINLRQLKYLEKYQPHFGQK-QKCTIM 170          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|1173948598|gb|OQR96708.1| (protein tyrosine phosphatase type IVA protein 1 [Achlya hypogyna])

HSP 1 Score: 154.066 bits (388), Expect = 1.139e-43
Identity = 90/221 (40.72%), Postives = 119/221 (53.85%), Query Frame = 0
Query:   21 MAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQY---QKREAVSCGGCSIM 238
            M+    KP+ + + +L FL++DAP D NL  Y++E K++ V  +VR CEPTY    VEAAG +V +M + DG  P Q++I +WLALV+      AR                  +G            +HQ                  T+AVHCVAGLGRAPVLVA+AL+EHG  D    VE IR  RRGAIN+RQL YLE+Y   +K++      CSIM
Sbjct:    1 MSAPTNKPSHVQYDQLSFLILDAPNDSNLPLYLKEFKKYQVTDIVRACEPTYSDATVEAAGFRVHEMEFPDGEPPSQEIIQKWLALVEQTMKDNAR----------------DNAG------------THQSDK---------------TVAVHCVAGLGRAPVLVAIALMEHGL-DVITAVEHIRKARRGAINLRQLKYLEKYTPTRKKDK-----CSIM 172          
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|953500981|emb|CEG38014.1| (protein tyrosine phosphatase [Plasmopara halstedii])

HSP 1 Score: 153.295 bits (386), Expect = 1.993e-43
Identity = 89/214 (41.59%), Postives = 114/214 (53.27%), Query Frame = 0
Query:   25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
              KPT + W  L F++MDAP D NL  Y++E K++NV  LVR CE TY  E VEAAGI V ++ + DG SP  D++D WL LV++ F                                               ++   +     +IAVHCVAGLGRAPVLVA+ALIE+G    +A VE IR  RRGAIN+RQL YLE+YQ R   +   C+IM
Sbjct:    5 TNKPTLVKWEHLSFVIMDAPNDSNLHIYLKELKKYNVSDLVRACEVTYSREAVEAAGIHVHELEFPDGESPDPDILDMWLDLVENCF-----------------------------------------------KDNVSNSNSNRSIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169          
The following BLAST results are available for this feature:
BLAST of EWM28224.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553182187|ref|XP_005853694.1|5.812e-176100.00protein tyrosine phosphatase type iva protein 1 [N... [more]
gi|298706463|emb|CBJ29450.1|9.896e-5542.55protein tyrosine phosphatase [Ectocarpus siliculos... [more]
gi|695465305|ref|XP_009539147.1|6.010e-4743.46hypothetical protein PHYSODRAFT_356206 [Phytophtho... [more]
gi|301114315|ref|XP_002998927.1|3.131e-4642.52protein tyrosine phosphatase type IVA protein 1 [P... [more]
gi|1214695993|gb|OWZ09624.1|3.234e-4642.99Protein tyrosine phosphatase type IVA protein 1 [P... [more]
gi|675210487|ref|XP_008914128.1|5.941e-4642.99hypothetical protein PPTG_17837 [Phytophthora para... [more]
gi|1036039043|ref|XP_016944963.1|7.285e-4437.77PREDICTED: protein tyrosine phosphatase type IVA 1... [more]
gi|635361706|emb|CCI49389.1|1.072e-4342.66unnamed protein product [Albugo candida][more]
gi|1173948598|gb|OQR96708.1|1.139e-4340.72protein tyrosine phosphatase type IVA protein 1 [A... [more]
gi|953500981|emb|CEG38014.1|1.993e-4341.59protein tyrosine phosphatase [Plasmopara halstedii... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2384rna2384Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications