EWM28224.1, cds2376 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|553182187|ref|XP_005853694.1| (protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana CCMP526] >gi|422295366|gb|EKU22665.1| protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana CCMP526] >gi|585110569|gb|EWM28224.1| protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 491.886 bits (1265), Expect = 5.812e-176 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0 Query: 1 MAPPQSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238 MAPPQSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM Sbjct: 1 MAPPQSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|298706463|emb|CBJ29450.1| (protein tyrosine phosphatase [Ectocarpus siliculosus]) HSP 1 Score: 183.726 bits (465), Expect = 9.896e-55 Identity = 100/235 (42.55%), Postives = 141/235 (60.00%), Query Frame = 0 Query: 5 QSAPKHFYSSVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVS-CGGCSIM 238 ++AP + +++ + A A ++ P+ + W KLRF++MDAP+ NL YIRE K+ NV+ +VRVCEPTY EVEAAGI++L+M YDDG +PP ++I++WL +V F +P +S P N +G PTIAVHCVAGLGRAPVLVA+ALIE+G D VE+IR +RRGAIN +QL+YL+ Y++R + + C C +M Sbjct: 18 RTAPTN--TALGRVEAAATMSAHPSLVEWKKLRFVIMDAPKANNLHLYIRELKKQNVVCVVRVCEPTYPASEVEAAGIKLLEMEYDDGGAPPVEIINKWLDVVQTTFHN--------APDSSGP-------------------NGSEG----------------PTIAVHCVAGLGRAPVLVAIALIEYG-KDPIKAVEYIRDRRRGAINRKQLSYLDSYERRSSGNGCSSCVVM 206
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|695465305|ref|XP_009539147.1| (hypothetical protein PHYSODRAFT_356206 [Phytophthora sojae] >gi|348665787|gb|EGZ05616.1| hypothetical protein PHYSODRAFT_356206 [Phytophthora sojae]) HSP 1 Score: 162.54 bits (410), Expect = 6.010e-47 Identity = 93/214 (43.46%), Postives = 117/214 (54.67%), Query Frame = 0 Query: 25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238 KPT + W L F++MDAP D NL Y++E K+HNV LVR CE TY +E VEAAGI V ++ + DG SP +++D+WL LV+D F A I S + +IAVHCVAGLGRAPVLVA+ALIE+G +A VE IR RRGAIN+RQL YLE+YQ R + C+IM Sbjct: 5 TNKPTMVKWEHLSFVIMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVEDCFKDNA--------------IDSKNNK---------------------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|301114315|ref|XP_002998927.1| (protein tyrosine phosphatase type IVA protein 1 [Phytophthora infestans T30-4] >gi|262111021|gb|EEY69073.1| protein tyrosine phosphatase type IVA protein 1 [Phytophthora infestans T30-4]) HSP 1 Score: 160.614 bits (405), Expect = 3.131e-46 Identity = 91/214 (42.52%), Postives = 116/214 (54.21%), Query Frame = 0 Query: 25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238 KPT + W L F++MDAP D NL Y++E K+HNV LVR CE TY +E VEAAGI V ++ + DG SP +++D+WL LV+ F S+ + N +IAVHCVAGLGRAPVLVA+ALIE+G +A VE IR RRGAIN+RQL YLE+YQ R + C+IM Sbjct: 5 TNKPTMVKWEHLSFVIMDAPNDSNLHIYLKELKKHNVTELVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVETCFKD---------------------------NSIDSKNNK--------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|1214695993|gb|OWZ09624.1| (Protein tyrosine phosphatase type IVA protein 1 [Phytophthora megakarya]) HSP 1 Score: 160.614 bits (405), Expect = 3.234e-46 Identity = 92/214 (42.99%), Postives = 116/214 (54.21%), Query Frame = 0 Query: 25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238 KPT + W L F++MDAP D NL Y++E K+HNV LVR CE TY +E V AAGI V ++ + DG SP +++D WL LV+DVF A + + N +IAVHCVAGLGRAPVLVA+ALIE+G +A VE IR RRGAIN+RQL YLE+YQ R + C+IM Sbjct: 5 TNKPTMVKWEHLSFVVMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVVAAGIHVHELEFPDGESPDPEILDEWLDLVEDVFKDNA---------------------------IDAKNNK--------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|675210487|ref|XP_008914128.1| (hypothetical protein PPTG_17837 [Phytophthora parasitica INRA-310] >gi|566010354|gb|ETI33265.1| hypothetical protein F443_20048 [Phytophthora parasitica P1569] >gi|567947818|gb|ETK73590.1| hypothetical protein L915_19499 [Phytophthora parasitica] >gi|567976500|gb|ETL27021.1| hypothetical protein L916_19392 [Phytophthora parasitica] >gi|568005985|gb|ETL80262.1| hypothetical protein L917_19234 [Phytophthora parasitica] >gi|568035881|gb|ETM33508.1| hypothetical protein L914_19272 [Phytophthora parasitica] >gi|568085726|gb|ETN00629.1| hypothetical protein PPTG_17837 [Phytophthora parasitica INRA-310] >gi|570314052|gb|ETO62000.1| hypothetical protein F444_20057 [Phytophthora parasitica P1976] >gi|570937819|gb|ETP03076.1| hypothetical protein F441_19922 [Phytophthora parasitica CJ01A1] >gi|570968136|gb|ETP31255.1| hypothetical protein F442_19862 [Phytophthora parasitica P10297] >gi|970633092|gb|KUF78953.1| protein tyrosine phosphatase type IVA A [Phytophthora nicotianae] >gi|970646455|gb|KUF86616.1| Tubulin-specific chaperone C [Phytophthora nicotianae]) HSP 1 Score: 159.844 bits (403), Expect = 5.941e-46 Identity = 92/214 (42.99%), Postives = 116/214 (54.21%), Query Frame = 0 Query: 25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238 KPT + W L F++MDAP D NL Y++E K+HNV LVR CE TY +E VEAAGI V ++ + DG SP +++D+WL LV+ F A I S + +IAVHCVAGLGRAPVLVA+ALIE+G +A VE IR RRGAIN+RQL YLE+YQ R + C+IM Sbjct: 5 TNKPTMVKWEHLSFVIMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVETCFKDNA--------------IDSKNNK---------------------------------SIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|1036039043|ref|XP_016944963.1| (PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii] >gi|1036039045|ref|XP_016944964.1| PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii] >gi|1036039047|ref|XP_016944965.1| PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii] >gi|1036039049|ref|XP_016944966.1| PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X1 [Drosophila suzukii]) HSP 1 Score: 157.532 bits (397), Expect = 7.285e-44 Identity = 88/233 (37.77%), Postives = 122/233 (52.36%), Query Frame = 0 Query: 28 PTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYP------------------------GIQSGKSGVALAR-SMSWRENSHQGAAAASP----------QELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQ 225 P + + ++FL+ D P D ++HYI E K++NV +VRVCEP+Y+T+E+E GI V D+ ++DG+ PPQ V+D W ++ D F K T S + S SG A ++ +N H AA+ + + P +AVHCVAGLGRAPVLVALALIE G A VE IR KRRGAIN +QL++LE+Y+ Sbjct: 14 PALIEYKGMKFLITDRPSDITINHYITELKKNNVNTVVRVCEPSYNTDELETQGITVKDLAFEDGTFPPQQVVDEWFEVLKDNFRKSTSATLSYYKHKRFSLRHIPKTVPPTTATATAIRTSATRASLSAASGRATDTIPLTANDNLHDNGEAATAIYNNTAFVDNETCRYQQNPEACVAVHCVAGLGRAPVLVALALIELGLK-YEAAVEMIRDKRRGAINAKQLSFLEKYK 245
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|635361706|emb|CCI49389.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 154.066 bits (388), Expect = 1.072e-43 Identity = 93/218 (42.66%), Postives = 114/218 (52.29%), Query Frame = 0 Query: 21 MAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238 M KPT + W L F++MDAP + NL Y++E K++NV LVR CE TYD E V AAGI V ++ + DG P D+ RWL+LV D F K + P+LS +IAVHCVAGLGRAPVLVA+ALIE+G SA VE IR RRGAIN+RQL YLE+YQ C+IM Sbjct: 1 MIAPTNKPTLVQWANLSFVIMDAPTNDNLQFYLKELKKYNVTDLVRACEITYDREAVNAAGINVHELEFPDGEPPDDDIFQRWLSLVADRF-KENQPKPTLSNR---------------------------------------------SIAVHCVAGLGRAPVLVAIALIENGVDPISA-VEHIRKFRRGAINLRQLKYLEKYQPHFGQK-QKCTIM 170
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|1173948598|gb|OQR96708.1| (protein tyrosine phosphatase type IVA protein 1 [Achlya hypogyna]) HSP 1 Score: 154.066 bits (388), Expect = 1.139e-43 Identity = 90/221 (40.72%), Postives = 119/221 (53.85%), Query Frame = 0 Query: 21 MAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQY---QKREAVSCGGCSIM 238 M+ KP+ + + +L FL++DAP D NL Y++E K++ V +VR CEPTY VEAAG +V +M + DG P Q++I +WLALV+ AR +G +HQ T+AVHCVAGLGRAPVLVA+AL+EHG D VE IR RRGAIN+RQL YLE+Y +K++ CSIM Sbjct: 1 MSAPTNKPSHVQYDQLSFLILDAPNDSNLPLYLKEFKKYQVTDIVRACEPTYSDATVEAAGFRVHEMEFPDGEPPSQEIIQKWLALVEQTMKDNAR----------------DNAG------------THQSDK---------------TVAVHCVAGLGRAPVLVAIALMEHGL-DVITAVEHIRKARRGAINLRQLKYLEKYTPTRKKDK-----CSIM 172
BLAST of EWM28224.1 vs. NCBI_GenBank
Match: gi|953500981|emb|CEG38014.1| (protein tyrosine phosphatase [Plasmopara halstedii]) HSP 1 Score: 153.295 bits (386), Expect = 1.993e-43 Identity = 89/214 (41.59%), Postives = 114/214 (53.27%), Query Frame = 0 Query: 25 AGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTPSLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238 KPT + W L F++MDAP D NL Y++E K++NV LVR CE TY E VEAAGI V ++ + DG SP D++D WL LV++ F ++ + +IAVHCVAGLGRAPVLVA+ALIE+G +A VE IR RRGAIN+RQL YLE+YQ R + C+IM Sbjct: 5 TNKPTLVKWEHLSFVIMDAPNDSNLHIYLKELKKYNVSDLVRACEVTYSREAVEAAGIHVHELEFPDGESPDPDILDMWLDLVENCF-----------------------------------------------KDNVSNSNSNRSIAVHCVAGLGRAPVLVAIALIEYGLDPINA-VEHIRKFRRGAINLRQLKYLEKYQPRRG-NKAKCTIM 169 The following BLAST results are available for this feature:
BLAST of EWM28224.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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