|
|
Properties
| Property Name | Value |
|---|
| Product | zinc finger mynd domain-containing protein 17 |
| Orig transcript id | gnl|cribi|Naga_100616g2.10678.mrna |
| Orig protein id | gnl|cribi|Naga_100616g2.10678 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:77621..80025 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2308 ID=rna2308|Name=rna2308|organism=Nannochloropsis gaditana|type=mRNA|length=1998bp
TAATGTTGAAGCTAAACCGTAACTGCATGCACAGGAGGTTGCAGAGGAGT
TTGTCTAAGCAACCCCTTTTTTTCAAGGAAACATGTCAGATAAAGCTTAA
CATGTCAGATAAAGCTTGTAGACGACAGTAAAATAATGACACTCGTATGG
TGCTACTTATTCCAGGACTCACTGTCTCTGCTTTGTTATTTGCCTCCCTT
TCAGCCGGACCAACAAGCAAGCTGAAGACGCATATTTTGCCTACATTTCC
CACTCCGCCTACTACGCATGGCCACCCAAGTGAATACCACACAGGACAGC
GAAAACTCAACAGTGATAACAGACGAGCAGGCATGGCAATATTTTTCCCC
TTTCCTGACCGTAGGCCTTGTAAAAGCGCACGAATTGCACGCCCTGCTCA
AAGCTCCTCTCCGGCAACGCGGTGAACGCTTACAGCTGCTTTTCGACGAG
ACAATCCAGAAGCGAGAAGCAATGCGGCGGATTTGTGCAGAATGTGGGAG
ACGAGAGGGGGACAAAGGCGTAGACAAGTTGAAGGTGTGTGGGAAATGCG
CTAACATATGGTATTGTAGTCGGGACTGCCAGCTCGCAAATTTCCATTCG
GGCGAGCATAAGAAGGCGTGCACTTCTCTAAAAATCGCCCGAATCTGTCG
CGAAAATCAAATGAAGCGTGCGGAAATGAAAGAGGATTGGATCCGAACCT
ATCTGATGGGTTTGGAGGGACATACGAAGATACAGTGGCCAGAGGGCCAG
ATTCCTGAGGGCTGGTCGGAGTTTTTCGCGGCGCGGCAACTCGGTCACCA
GGTCAGTGCCAACAGCAACAGCGGTATGTGCCTGAGCGAGCTGTTGCACG
AAGGGTTGACGGTGGCCATGGCGGCGAAAAGGTTCGGGCTTTTGGGTGGG
AGGGGAGGTAGAGAGGGTCATGGTGGGGACCACGGACGCCATCGACGGCC
TTTTCGCTTGCACATCCTGGGGGCGACGGAGACGCAGGAGATCCAACGCT
TGCCCCTGTCGATGGGGGAGCTTGGGGCCTTGCTCTGTCCCTTCTATTTT
GAGGGCTTGGAAGTGTCGGTCTTTGGGCCCCAGGTCATGACCCCGACGGC
GTTCCGGGTATCCTTGGCGGAGGGCAAGGAGACAGCCAGGGACATCACGG
TGTGGAAGAGCAACCTCCTTTACCACAACTGGGTCCTATCTCACGAGGGA
AGCAAAGAGGCGCCACCGGACCTGGTGGTTGCGTTGAACAGCGGACTGCA
TACTGGTGGGGAGATATGGAGAGGTGGGGGGGGCAGGAAGGTGGAAGGGA
AGCGGCAGAAGAAGCACAGCGAATGGTGGCGGCTGTCGTTGAGTCAACCC
CCTCCCACGGCAATGCCTCCTGTGCTCGATATCATAAGTCCCATGCACAG
TGCCCTTTCCTTTTTTTCCGTGCAAAGACATGCAAGCTTACGCGTTTTCC
CCTCCGTCGTTACCCCTCCCGGCCTCAGGCGACGATCATCACCACGTGGA
CGGCTCCATGTGGCTACCCACCCTTACTTACCTGGTCGCGTCCGGGATCC
CATTTCTGCTTACCATGTACGACGCGGAGGAAGGGAGGAAGACCCTGGAG
ATGCTGGAGTCGTTCGACGCGTGCGTTGCATGGGGCCCCGACTTGAACCC
CATGCGGTCGCTGGTCTTGGAGGAAACGGAGGCACCGGCCTTGCAACGGT
ACGCCCGCCTGGTCGCGGATGGGCGCATGGACGCCGGGGCCGACGAGCCG
GACGGTCCATTGCCACCCTTGGAATTGACGTTGTGTAATCGAACCACGGG
GGACTCCAGGTATTGGGTTGGGGTTAAAGGCACCCGCGGATAGGGTGAGA
AGGAGGTATGGTTGGATGGGAAATGGAGGGGAGGAGCGGAAAATGTGGAG
GCCATGGAGTTGAATCAGGAGGGGAAAGACCTTCTTGAAATGAACCAGTA
AACGCAAGACATATCATGAAAGTAAAATAATTGGGAGTGATACCTCTT back to topprotein sequence of rna2308 >rna2308-protein ID=rna2308-protein|Name=rna2308|organism=Nannochloropsis gaditana|type=polypeptide|length=450bp
MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQ
RGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYC
SRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLE
GHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVA
MAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMG
ELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNL
LYHNWVLSHEGSKEAPPDLVVALNSGLHTGDDHHHVDGSMWLPTLTYLVA
SGIPFLLTMYDAEEGRKTLEMLESFDACVAWGPDLNPMRSLVLEETEAPA
LQRYARLVADGRMDAGADEPDGPLPPLELTLCNRTTGDSRYWVGVKGTRG back to topmRNA from alignment at CM002459.1:77621..80025- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2308 ID=rna2308|Name=rna2308|organism=Nannochloropsis gaditana|type=mRNA|length=2405bp|location=Sequence derived from alignment at CM002459.1:77621..80025- (Nannochloropsis gaditana)
TTTTCAAGGAAACATGTCAGATAAAGCTTAACATGTCAGATAAAGCTTGT
AGACGACAGTAAAATAATGACACTCGTATGGTGCTACTTATTCCAGGACT
CACTGTCTCTGCTTTGTTATTTGCCTCCCTTTCAGCCGGACCAACAAGCA
AGCTGAAGACGCATATTTTGCCTACATTTCCCACTCCGCCTACTACGCAT
GGCCACCCAAGTGAATACCACACAGGACAGCGAAAACTCAACAGTGATAA
CAGACGAGCAGGCATGGCAATATTTTTCCCCTTTCCTGACCGTAGGCCTT
GTAAAAGCGCACGAATTGCACGCCCTGCTCAAAGCTCCTCTCCGGCAACG
CGGTGAACGCTTACAGCTGCTTTTCGACGAGACAATCCAGAAGCGAGAAG
CAATGCGGCGGATTTGTGCAGAATGTGGGAGACGAGAGGGGGACAAAGGC
GTAGACAAGTTGAAGGTGTGTGGGAAATGCGCTAACATATGGTGAGTGCC
AGAGCGGAGCTATGATGAATAATTCCTTTTGTGGTCACATAGTTCATCAT
TCGCTCTTGCAAATCTCGATGGCATGCCGTCATTTCTTTGCCAATGGGCA
GGAATACGGGGGAGAAATGTGAAGGCTTACATTTGGAGTAAGCACAGGAA
AAATGCATTTTAACATCTGCGGCGGCTTTTCCTCCTTTCTTGTCTCTCCG
ACTTCCATTTGTTTCTGGTTCCTGTTGGGGTCCCTCGTCCAATTTTTGCA
GGCATATATGTCTTTAATAAGGTCATTGTGATGGATGGAAGAGAATTACG
CTTTAAAATCCCGTCCTCTCATCGTGTCTTAATGACCACCTCCTCAGGTA
TTGTAGTCGGGACTGCCAGCTCGCAAATTTCCATTCGGGCGAGCATAAGA
AGGCGTGCACTTCTCTAAAAATCGCCCGAATCTGTCGCGAAAATCAAATG
AAGCGTGCGGAAATGAAAGAGGATTGGATCCGAACCTATCTGATGGGTTT
GGAGGGACATACGAAGATACAGTGGCCAGAGGGCCAGATTCCTGAGGGCT
GGTCGGAGTTTTTCGCGGCGCGGCAACTCGGTCACCAGGTCAGTGCCAAC
AGCAACAGCGGTATGTGCCTGAGCGAGCTGTTGCACGAAGGGTTGACGGT
GGCCATGGCGGCGAAAAGGTTCGGGCTTTTGGGTGGGAGGGGAGGTAGAG
AGGGTCATGGTGGGGACCACGGACGCCATCGACGGCCTTTTCGCTTGCAC
ATCCTGGGGGCGACGGAGACGCAGGAGATCCAACGCTTGCCCCTGTCGAT
GGGGGAGCTTGGGGCCTTGCTCTGTCCCTTCTATTTTGAGGGTAAGCCTC
CTCCTTTGCCCTCTGGGGCTGGCCGCATCAATTATCGACATGCCTCGTCT
CGTCTTACCGTGGTGTCCCCCTCCTTCCTTCCCTCCCTTCCCCCCTCCTC
CACCCCCAAAGGCTTGGAAGTGTCGGTCTTTGGGCCCCAGGTCATGACCC
CGACGGCGTTCCGGGTATCCTTGGCGGAGGGCAAGGAGACAGCCAGGGAC
ATCACGGTGTGGAAGAGCAACCTCCTTTACCACAACTGGGTCCTATCTCA
CGAGGGAAGCAAAGAGGCGCCACCGGACCTGGTGGTTGCGTTGAACAGCG
GACTGCATACTGGTGGGGAGATATGGAGAGGTGGGGGGGGCAGGAAGGTG
GAAGGGAAGCGGCAGAAGAAGCACAGCGAATGGTGGCGGCTGTCGTTGAG
TCAACCCCCTCCCACGGCAATGCCTCCTGTGCTCGATATCATAAGTCCCA
TGCACAGTGCCCTTTCCTTTTTTTCCGTGCAAAGACATGCAAGCTTACGC
GTTTTCCCCTCCGTCGTTACCCCTCCCGGCCTCAGGCGACGATCATCACC
ACGTGGACGGCTCCATGTGGCTACCCACCCTTACTTACCTGGTCGCGTCC
GGGATCCCATTTCTGCTTACCATGTACGACGCGGAGGAAGGGAGGAAGAC
CCTGGAGATGCTGGAGTCGTTCGACGCGTGCGTTGCATGGGGCCCCGACT
TGAACCCCATGCGGTCGCTGGTCTTGGAGGAAACGGAGGCACCGGCCTTG
CAACGGTACGCCCGCCTGGTCGCGGATGGGCGCATGGACGCCGGGGCCGA
CGAGCCGGACGGTCCATTGCCACCCTTGGAATTGACGTTGTGTAATCGAA
CCACGGGGGACTCCAGGTATTGGGTTGGGGTTAAAGGCACCCGCGGATAG
GGTGAGAAGGAGGTATGGTTGGATGGGAAATGGAGGGGAGGAGCGGAAAA
TGTGGAGGCCATGGAGTTGAATCAGGAGGGGAAAGACCTTCTTGAAATGA
ACCAGTAAACGCAAGACATATCATGAAAGTAAAATAATTGGGAGTGATAC
CTCTT back to topCoding sequence (CDS) from alignment at CM002459.1:77621..80025- >rna2308 ID=rna2308|Name=rna2308|organism=Nannochloropsis gaditana|type=CDS|length=5412bp|location=Sequence derived from alignment at CM002459.1:77621..80025- (Nannochloropsis gaditana)
GCGACGATCATCACCACGTGGACGGCTCCATGTGGCTACCCACCCTTACT
TACCTGGTCGCGTCCGGGATCCCATTTCTGCTTACCATGTACGACGCGGA
GGAAGGGAGGAAGACCCTGGAGATGCTGGAGTCGTTCGACGCGTGCGTTG
CATGGGGCCCCGACTTGAACCCCATGCGGTCGCTGGTCTTGGAGGAAACG
GAGGCACCGGCCTTGCAACGGTACGCCCGCCTGGTCGCGGATGGGCGCAT
GGACGCCGGGGCCGACGAGCCGGACGGTCCATTGCCACCCTTGGAATTGA
CGTTGTGTAATCGAACCACGGGGGACTCCAGGTATTGGGTTGGGGTTAAA
GGCACCCGCGGATAGGCTTGGAAGTGTCGGTCTTTGGGCCCCAGGTCATG
ACCCCGACGGCGTTCCGGGTATCCTTGGCGGAGGGCAAGGAGACAGCCAG
GGACATCACGGTGTGGAAGAGCAACCTCCTTTACCACAACTGGGTCCTAT
CTCACGAGGGAAGCAAAGAGGCGCCACCGGACCTGGTGGTTGCGTTGAAC
AGCGGACTGCATACTGGTATTGTAGTCGGGACTGCCAGCTCGCAAATTTC
CATTCGGGCGAGCATAAGAAGGCGTGCACTTCTCTAAAAATCGCCCGAAT
CTGTCGCGAAAATCAAATGAAGCGTGCGGAAATGAAAGAGGATTGGATCC
GAACCTATCTGATGGGTTTGGAGGGACATACGAAGATACAGTGGCCAGAG
GGCCAGATTCCTGAGGGCTGGTCGGAGTTTTTCGCGGCGCGGCAACTCGG
TCACCAGGTCAGTGCCAACAGCAACAGCGGTATGTGCCTGAGCGAGCTGT
TGCACGAAGGGTTGACGGTGGCCATGGCGGCGAAAAGGTTCGGGCTTTTG
GGTGGGAGGGGAGGTAGAGAGGGTCATGGTGGGGACCACGGACGCCATCG
ACGGCCTTTTCGCTTGCACATCCTGGGGGCGACGGAGACGCAGGAGATCC
AACGCTTGCCCCTGTCGATGGGGGAGCTTGGGGCCTTGCTCTGTCCCTTC
TATTTTGAGGATGGCCACCCAAGTGAATACCACACAGGACAGCGAAAACT
CAACAGTGATAACAGACGAGCAGGCATGGCAATATTTTTCCCCTTTCCTG
ACCGTAGGCCTTGTAAAAGCGCACGAATTGCACGCCCTGCTCAAAGCTCC
TCTCCGGCAACGCGGTGAACGCTTACAGCTGCTTTTCGACGAGACAATCC
AGAAGCGAGAAGCAATGCGGCGGATTTGTGCAGAATGTGGGAGACGAGAG
GGGGACAAAGGCGTAGACAAGTTGAAGGTGTGTGGGAAATGCGCTAACAT
ATGGCGACGATCATCACCACGTGGACGGCTCCATGTGGCTACCCACCCTT
ACTTACCTGGTCGCGTCCGGGATCCCATTTCTGCTTACCATGTACGACGC
GGAGGAAGGGAGGAAGACCCTGGAGATGCTGGAGTCGTTCGACGCGTGCG
TTGCATGGGGCCCCGACTTGAACCCCATGCGGTCGCTGGTCTTGGAGGAA
ACGGAGGCACCGGCCTTGCAACGGTACGCCCGCCTGGTCGCGGATGGGCG
CATGGACGCCGGGGCCGACGAGCCGGACGGTCCATTGCCACCCTTGGAAT
TGACGTTGTGTAATCGAACCACGGGGGACTCCAGGTATTGGGTTGGGGTT
AAAGGCACCCGCGGATAGGCTTGGAAGTGTCGGTCTTTGGGCCCCAGGTC
ATGACCCCGACGGCGTTCCGGGTATCCTTGGCGGAGGGCAAGGAGACAGC
CAGGGACATCACGGTGTGGAAGAGCAACCTCCTTTACCACAACTGGGTCC
TATCTCACGAGGGAAGCAAAGAGGCGCCACCGGACCTGGTGGTTGCGTTG
AACAGCGGACTGCATACTGGTATTGTAGTCGGGACTGCCAGCTCGCAAAT
TTCCATTCGGGCGAGCATAAGAAGGCGTGCACTTCTCTAAAAATCGCCCG
AATCTGTCGCGAAAATCAAATGAAGCGTGCGGAAATGAAAGAGGATTGGA
TCCGAACCTATCTGATGGGTTTGGAGGGACATACGAAGATACAGTGGCCA
GAGGGCCAGATTCCTGAGGGCTGGTCGGAGTTTTTCGCGGCGCGGCAACT
CGGTCACCAGGTCAGTGCCAACAGCAACAGCGGTATGTGCCTGAGCGAGC
TGTTGCACGAAGGGTTGACGGTGGCCATGGCGGCGAAAAGGTTCGGGCTT
TTGGGTGGGAGGGGAGGTAGAGAGGGTCATGGTGGGGACCACGGACGCCA
TCGACGGCCTTTTCGCTTGCACATCCTGGGGGCGACGGAGACGCAGGAGA
TCCAACGCTTGCCCCTGTCGATGGGGGAGCTTGGGGCCTTGCTCTGTCCC
TTCTATTTTGAGGATGGCCACCCAAGTGAATACCACACAGGACAGCGAAA
ACTCAACAGTGATAACAGACGAGCAGGCATGGCAATATTTTTCCCCTTTC
CTGACCGTAGGCCTTGTAAAAGCGCACGAATTGCACGCCCTGCTCAAAGC
TCCTCTCCGGCAACGCGGTGAACGCTTACAGCTGCTTTTCGACGAGACAA
TCCAGAAGCGAGAAGCAATGCGGCGGATTTGTGCAGAATGTGGGAGACGA
GAGGGGGACAAAGGCGTAGACAAGTTGAAGGTGTGTGGGAAATGCGCTAA
CATATGGCGACGATCATCACCACGTGGACGGCTCCATGTGGCTACCCACC
CTTACTTACCTGGTCGCGTCCGGGATCCCATTTCTGCTTACCATGTACGA
CGCGGAGGAAGGGAGGAAGACCCTGGAGATGCTGGAGTCGTTCGACGCGT
GCGTTGCATGGGGCCCCGACTTGAACCCCATGCGGTCGCTGGTCTTGGAG
GAAACGGAGGCACCGGCCTTGCAACGGTACGCCCGCCTGGTCGCGGATGG
GCGCATGGACGCCGGGGCCGACGAGCCGGACGGTCCATTGCCACCCTTGG
AATTGACGTTGTGTAATCGAACCACGGGGGACTCCAGGTATTGGGTTGGG
GTTAAAGGCACCCGCGGATAGGCTTGGAAGTGTCGGTCTTTGGGCCCCAG
GTCATGACCCCGACGGCGTTCCGGGTATCCTTGGCGGAGGGCAAGGAGAC
AGCCAGGGACATCACGGTGTGGAAGAGCAACCTCCTTTACCACAACTGGG
TCCTATCTCACGAGGGAAGCAAAGAGGCGCCACCGGACCTGGTGGTTGCG
TTGAACAGCGGACTGCATACTGGTATTGTAGTCGGGACTGCCAGCTCGCA
AATTTCCATTCGGGCGAGCATAAGAAGGCGTGCACTTCTCTAAAAATCGC
CCGAATCTGTCGCGAAAATCAAATGAAGCGTGCGGAAATGAAAGAGGATT
GGATCCGAACCTATCTGATGGGTTTGGAGGGACATACGAAGATACAGTGG
CCAGAGGGCCAGATTCCTGAGGGCTGGTCGGAGTTTTTCGCGGCGCGGCA
ACTCGGTCACCAGGTCAGTGCCAACAGCAACAGCGGTATGTGCCTGAGCG
AGCTGTTGCACGAAGGGTTGACGGTGGCCATGGCGGCGAAAAGGTTCGGG
CTTTTGGGTGGGAGGGGAGGTAGAGAGGGTCATGGTGGGGACCACGGACG
CCATCGACGGCCTTTTCGCTTGCACATCCTGGGGGCGACGGAGACGCAGG
AGATCCAACGCTTGCCCCTGTCGATGGGGGAGCTTGGGGCCTTGCTCTGT
CCCTTCTATTTTGAGGATGGCCACCCAAGTGAATACCACACAGGACAGCG
AAAACTCAACAGTGATAACAGACGAGCAGGCATGGCAATATTTTTCCCCT
TTCCTGACCGTAGGCCTTGTAAAAGCGCACGAATTGCACGCCCTGCTCAA
AGCTCCTCTCCGGCAACGCGGTGAACGCTTACAGCTGCTTTTCGACGAGA
CAATCCAGAAGCGAGAAGCAATGCGGCGGATTTGTGCAGAATGTGGGAGA
CGAGAGGGGGACAAAGGCGTAGACAAGTTGAAGGTGTGTGGGAAATGCGC
TAACATATGGCGACGATCATCACCACGTGGACGGCTCCATGTGGCTACCC
ACCCTTACTTACCTGGTCGCGTCCGGGATCCCATTTCTGCTTACCATGTA
CGACGCGGAGGAAGGGAGGAAGACCCTGGAGATGCTGGAGTCGTTCGACG
CGTGCGTTGCATGGGGCCCCGACTTGAACCCCATGCGGTCGCTGGTCTTG
GAGGAAACGGAGGCACCGGCCTTGCAACGGTACGCCCGCCTGGTCGCGGA
TGGGCGCATGGACGCCGGGGCCGACGAGCCGGACGGTCCATTGCCACCCT
TGGAATTGACGTTGTGTAATCGAACCACGGGGGACTCCAGGTATTGGGTT
GGGGTTAAAGGCACCCGCGGATAGGCTTGGAAGTGTCGGTCTTTGGGCCC
CAGGTCATGACCCCGACGGCGTTCCGGGTATCCTTGGCGGAGGGCAAGGA
GACAGCCAGGGACATCACGGTGTGGAAGAGCAACCTCCTTTACCACAACT
GGGTCCTATCTCACGAGGGAAGCAAAGAGGCGCCACCGGACCTGGTGGTT
GCGTTGAACAGCGGACTGCATACTGGTATTGTAGTCGGGACTGCCAGCTC
GCAAATTTCCATTCGGGCGAGCATAAGAAGGCGTGCACTTCTCTAAAAAT
CGCCCGAATCTGTCGCGAAAATCAAATGAAGCGTGCGGAAATGAAAGAGG
ATTGGATCCGAACCTATCTGATGGGTTTGGAGGGACATACGAAGATACAG
TGGCCAGAGGGCCAGATTCCTGAGGGCTGGTCGGAGTTTTTCGCGGCGCG
GCAACTCGGTCACCAGGTCAGTGCCAACAGCAACAGCGGTATGTGCCTGA
GCGAGCTGTTGCACGAAGGGTTGACGGTGGCCATGGCGGCGAAAAGGTTC
GGGCTTTTGGGTGGGAGGGGAGGTAGAGAGGGTCATGGTGGGGACCACGG
ACGCCATCGACGGCCTTTTCGCTTGCACATCCTGGGGGCGACGGAGACGC
AGGAGATCCAACGCTTGCCCCTGTCGATGGGGGAGCTTGGGGCCTTGCTC
TGTCCCTTCTATTTTGAGGATGGCCACCCAAGTGAATACCACACAGGACA
GCGAAAACTCAACAGTGATAACAGACGAGCAGGCATGGCAATATTTTTCC
CCTTTCCTGACCGTAGGCCTTGTAAAAGCGCACGAATTGCACGCCCTGCT
CAAAGCTCCTCTCCGGCAACGCGGTGAACGCTTACAGCTGCTTTTCGACG
AGACAATCCAGAAGCGAGAAGCAATGCGGCGGATTTGTGCAGAATGTGGG
AGACGAGAGGGGGACAAAGGCGTAGACAAGTTGAAGGTGTGTGGGAAATG
CGCTAACATATG back to top
|