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Properties
| Property Name | Value |
|---|
| Product | zinc finger mynd domain-containing protein 17 |
| Orig transcript id | gnl|cribi|Naga_100616g2.10679.mrna |
| Orig protein id | gnl|cribi|Naga_100616g2.10679 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:77621..80094 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2307 ID=rna2307|Name=rna2307|organism=Nannochloropsis gaditana|type=mRNA|length=1020bp
CATCAGCTTTACAAGCATTTATCGCTTTTGCGGAGGGCATCGATTCCTTT
CGGACACTGGATGCAGGCCTACATCATGGGCTCGCTCTCTTTCTCCCGGA
AAGGAAAAGTAGAGCAAAGACAGGTTCTTGAGGGGCAACAGTAATGTCCA
CGTCACGATTCTTCCGACGAGCAGAGTCGCAGCTCGCGGCATCTCTGGTC
TTCATTCTGCTGTTTTCCCTCCTATTATCCGCGGACTGCTTCCTTTTTCG
GAGCAGTTTCCTGGGCCCCTGTACTGCCTCCACGAGCTCCCCCTGCGGTA
AAGTGACTCTGCAATGTAAGACCATATACATGATATGCAAGAGCTACCAT
GACAATTGCAGTGAGGATGGAAAAGGCGCCACTTGGGACGAATCACCTTG
TCCATGCACGGATTTAGGCGAAGGATTGGGCAGCCCAGGGCCGTTGACCG
ATTCTTGTACAGTGGGGGATGTCATCGTCCTCGTCCTCCCATTCTCTCTC
TCGCATAGCTCCACGTTCCTCGCCCTCGCTGTTGTAGATGGGCCTAAAGA
GGCCTGCCTCCTGTGTCTGCGCGATCCCGAAACACGGGAGTGGTACCGGG
ACAACCGTAGTGACGCAACTGTCTTGCGAGGATTGACGAGGGAAAGTTTG
CTTCAGGTGGTTGAAAACGCGTCCTACAGCCAGCGAAACATTCCTTCCTT
GGGAGGAGGAGTTGGGTACGGGGCAGACGCGGAGGACTGCTGGTTGATTG
AGGAGAAAGATTTGCCGGGGGGGTTGGTTAAACCCCTAGATGTCAAAGCG
ACAGCGCCGTGGGTGTTCGTGGGGTAGGGAGGATAGAGGGGAATACGACG
CCCCCAAAAAAATGAAGAAGGATCAGGAGTGAACGGGATGCACAAAATGG
AGGACAGGGTAAGGAGAGTAAATTTCGTGTTGAAGTAATCTGTACATAGA
CCACAGCTATGCGAGGCTTTCAAAGATGCCTCTATCCAGGCCACGACGCA
AACCATTATTTTTTATCCGA back to topprotein sequence of rna2307 >rna2307-protein ID=rna2307-protein|Name=rna2307|organism=Nannochloropsis gaditana|type=polypeptide|length=506bp
MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQ
RGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYC
SRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLE
GHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVA
MAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMG
ELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNL
LYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKH
SEWWRLSLSQPPPTAMPPVLDIISPMHSALSFFSVQRHASLRVFPSVVTP
PGLRRRSSPRGRLHVATHPYLPGRVRDPISAYHVRRGGREEDPGDAGVVR
RVRCMGPRLEPHAVAGLGGNGGTGLATVRPPGRGWAHGRRGRRAGRSIAT
LGIDVV back to topmRNA from alignment at CM002459.1:77621..80094- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2307 ID=rna2307|Name=rna2307|organism=Nannochloropsis gaditana|type=mRNA|length=2474bp|location=Sequence derived from alignment at CM002459.1:77621..80094- (Nannochloropsis gaditana)
TAATGTTGAAGCTAAACCGTAACTGCATGCACAGGAGGTTGCAGAGGAGT
TTGTCTAAGCAACCCCTTTTTTTCAAGGAAACATGTCAGATAAAGCTTAA
CATGTCAGATAAAGCTTGTAGACGACAGTAAAATAATGACACTCGTATGG
TGCTACTTATTCCAGGACTCACTGTCTCTGCTTTGTTATTTGCCTCCCTT
TCAGCCGGACCAACAAGCAAGCTGAAGACGCATATTTTGCCTACATTTCC
CACTCCGCCTACTACGCATGGCCACCCAAGTGAATACCACACAGGACAGC
GAAAACTCAACAGTGATAACAGACGAGCAGGCATGGCAATATTTTTCCCC
TTTCCTGACCGTAGGCCTTGTAAAAGCGCACGAATTGCACGCCCTGCTCA
AAGCTCCTCTCCGGCAACGCGGTGAACGCTTACAGCTGCTTTTCGACGAG
ACAATCCAGAAGCGAGAAGCAATGCGGCGGATTTGTGCAGAATGTGGGAG
ACGAGAGGGGGACAAAGGCGTAGACAAGTTGAAGGTGTGTGGGAAATGCG
CTAACATATGGTGAGTGCCAGAGCGGAGCTATGATGAATAATTCCTTTTG
TGGTCACATAGTTCATCATTCGCTCTTGCAAATCTCGATGGCATGCCGTC
ATTTCTTTGCCAATGGGCAGGAATACGGGGGAGAAATGTGAAGGCTTACA
TTTGGAGTAAGCACAGGAAAAATGCATTTTAACATCTGCGGCGGCTTTTC
CTCCTTTCTTGTCTCTCCGACTTCCATTTGTTTCTGGTTCCTGTTGGGGT
CCCTCGTCCAATTTTTGCAGGCATATATGTCTTTAATAAGGTCATTGTGA
TGGATGGAAGAGAATTACGCTTTAAAATCCCGTCCTCTCATCGTGTCTTA
ATGACCACCTCCTCAGGTATTGTAGTCGGGACTGCCAGCTCGCAAATTTC
CATTCGGGCGAGCATAAGAAGGCGTGCACTTCTCTAAAAATCGCCCGAAT
CTGTCGCGAAAATCAAATGAAGCGTGCGGAAATGAAAGAGGATTGGATCC
GAACCTATCTGATGGGTTTGGAGGGACATACGAAGATACAGTGGCCAGAG
GGCCAGATTCCTGAGGGCTGGTCGGAGTTTTTCGCGGCGCGGCAACTCGG
TCACCAGGTCAGTGCCAACAGCAACAGCGGTATGTGCCTGAGCGAGCTGT
TGCACGAAGGGTTGACGGTGGCCATGGCGGCGAAAAGGTTCGGGCTTTTG
GGTGGGAGGGGAGGTAGAGAGGGTCATGGTGGGGACCACGGACGCCATCG
ACGGCCTTTTCGCTTGCACATCCTGGGGGCGACGGAGACGCAGGAGATCC
AACGCTTGCCCCTGTCGATGGGGGAGCTTGGGGCCTTGCTCTGTCCCTTC
TATTTTGAGGGTAAGCCTCCTCCTTTGCCCTCTGGGGCTGGCCGCATCAA
TTATCGACATGCCTCGTCTCGTCTTACCGTGGTGTCCCCCTCCTTCCTTC
CCTCCCTTCCCCCCTCCTCCACCCCCAAAGGCTTGGAAGTGTCGGTCTTT
GGGCCCCAGGTCATGACCCCGACGGCGTTCCGGGTATCCTTGGCGGAGGG
CAAGGAGACAGCCAGGGACATCACGGTGTGGAAGAGCAACCTCCTTTACC
ACAACTGGGTCCTATCTCACGAGGGAAGCAAAGAGGCGCCACCGGACCTG
GTGGTTGCGTTGAACAGCGGACTGCATACTGGTGGGGAGATATGGAGAGG
TGGGGGGGGCAGGAAGGTGGAAGGGAAGCGGCAGAAGAAGCACAGCGAAT
GGTGGCGGCTGTCGTTGAGTCAACCCCCTCCCACGGCAATGCCTCCTGTG
CTCGATATCATAAGTCCCATGCACAGTGCCCTTTCCTTTTTTTCCGTGCA
AAGACATGCAAGCTTACGCGTTTTCCCCTCCGTCGTTACCCCTCCCGGCC
TCAGGCGACGATCATCACCACGTGGACGGCTCCATGTGGCTACCCACCCT
TACTTACCTGGTCGCGTCCGGGATCCCATTTCTGCTTACCATGTACGACG
CGGAGGAAGGGAGGAAGACCCTGGAGATGCTGGAGTCGTTCGACGCGTGC
GTTGCATGGGGCCCCGACTTGAACCCCATGCGGTCGCTGGTCTTGGAGGA
AACGGAGGCACCGGCCTTGCAACGGTACGCCCGCCTGGTCGCGGATGGGC
GCATGGACGCCGGGGCCGACGAGCCGGACGGTCCATTGCCACCCTTGGAA
TTGACGTTGTGTAATCGAACCACGGGGGACTCCAGGTATTGGGTTGGGGT
TAAAGGCACCCGCGGATAGGGTGAGAAGGAGGTATGGTTGGATGGGAAAT
GGAGGGGAGGAGCGGAAAATGTGGAGGCCATGGAGTTGAATCAGGAGGGG
AAAGACCTTCTTGAAATGAACCAGTAAACGCAAGACATATCATGAAAGTA
AAATAATTGGGAGTGATACCTCTT back to topCoding sequence (CDS) from alignment at CM002459.1:77621..80094- >rna2307 ID=rna2307|Name=rna2307|organism=Nannochloropsis gaditana|type=CDS|length=4563bp|location=Sequence derived from alignment at CM002459.1:77621..80094- (Nannochloropsis gaditana)
GCTTGGAAGTGTCGGTCTTTGGGCCCCAGGTCATGACCCCGACGGCGTTC
CGGGTATCCTTGGCGGAGGGCAAGGAGACAGCCAGGGACATCACGGTGTG
GAAGAGCAACCTCCTTTACCACAACTGGGTCCTATCTCACGAGGGAAGCA
AAGAGGCGCCACCGGACCTGGTGGTTGCGTTGAACAGCGGACTGCATACT
GGTGGGGAGATATGGAGAGGTGGGGGGGGCAGGAAGGTGGAAGGGAAGCG
GCAGAAGAAGCACAGCGAATGGTGGCGGCTGTCGTTGAGTCAACCCCCTC
CCACGGCAATGCCTCCTGTGCTCGATATCATAAGTCCCATGCACAGTGCC
CTTTCCTTTTTTTCCGTGCAAAGACATGCAAGCTTACGCGTTTTCCCCTC
CGTCGTTACCCCTCCCGGCCTCAGGCGACGATCATCACCACGTGGACGGC
TCCATGTGGCTACCCACCCTTACTTACCTGGTCGCGTCCGGGATCCCATT
TCTGCTTACCATGTACGACGCGGAGGAAGGGAGGAAGACCCTGGAGATGC
TGGAGTCGTTCGACGCGTGCGTTGCATGGGGCCCCGACTTGAACCCCATG
CGGTCGCTGGTCTTGGAGGAAACGGAGGCACCGGCCTTGCAACGGTACGC
CCGCCTGGTCGCGGATGGGCGCATGGACGCCGGGGCCGACGAGCCGGACG
GTCCATTGCCACCCTTGGAATTGACGTTGTGTAAGTATTGTAGTCGGGAC
TGCCAGCTCGCAAATTTCCATTCGGGCGAGCATAAGAAGGCGTGCACTTC
TCTAAAAATCGCCCGAATCTGTCGCGAAAATCAAATGAAGCGTGCGGAAA
TGAAAGAGGATTGGATCCGAACCTATCTGATGGGTTTGGAGGGACATACG
AAGATACAGTGGCCAGAGGGCCAGATTCCTGAGGGCTGGTCGGAGTTTTT
CGCGGCGCGGCAACTCGGTCACCAGGTCAGTGCCAACAGCAACAGCGGTA
TGTGCCTGAGCGAGCTGTTGCACGAAGGGTTGACGGTGGCCATGGCGGCG
AAAAGGTTCGGGCTTTTGGGTGGGAGGGGAGGTAGAGAGGGTCATGGTGG
GGACCACGGACGCCATCGACGGCCTTTTCGCTTGCACATCCTGGGGGCGA
CGGAGACGCAGGAGATCCAACGCTTGCCCCTGTCGATGGGGGAGCTTGGG
GCCTTGCTCTGTCCCTTCTATTTTGAGGATGGCCACCCAAGTGAATACCA
CACAGGACAGCGAAAACTCAACAGTGATAACAGACGAGCAGGCATGGCAA
TATTTTTCCCCTTTCCTGACCGTAGGCCTTGTAAAAGCGCACGAATTGCA
CGCCCTGCTCAAAGCTCCTCTCCGGCAACGCGGTGAACGCTTACAGCTGC
TTTTCGACGAGACAATCCAGAAGCGAGAAGCAATGCGGCGGATTTGTGCA
GAATGTGGGAGACGAGAGGGGGACAAAGGCGTAGACAAGTTGAAGGTGTG
TGGGAAATGCGCTAACATATGGCTTGGAAGTGTCGGTCTTTGGGCCCCAG
GTCATGACCCCGACGGCGTTCCGGGTATCCTTGGCGGAGGGCAAGGAGAC
AGCCAGGGACATCACGGTGTGGAAGAGCAACCTCCTTTACCACAACTGGG
TCCTATCTCACGAGGGAAGCAAAGAGGCGCCACCGGACCTGGTGGTTGCG
TTGAACAGCGGACTGCATACTGGTGGGGAGATATGGAGAGGTGGGGGGGG
CAGGAAGGTGGAAGGGAAGCGGCAGAAGAAGCACAGCGAATGGTGGCGGC
TGTCGTTGAGTCAACCCCCTCCCACGGCAATGCCTCCTGTGCTCGATATC
ATAAGTCCCATGCACAGTGCCCTTTCCTTTTTTTCCGTGCAAAGACATGC
AAGCTTACGCGTTTTCCCCTCCGTCGTTACCCCTCCCGGCCTCAGGCGAC
GATCATCACCACGTGGACGGCTCCATGTGGCTACCCACCCTTACTTACCT
GGTCGCGTCCGGGATCCCATTTCTGCTTACCATGTACGACGCGGAGGAAG
GGAGGAAGACCCTGGAGATGCTGGAGTCGTTCGACGCGTGCGTTGCATGG
GGCCCCGACTTGAACCCCATGCGGTCGCTGGTCTTGGAGGAAACGGAGGC
ACCGGCCTTGCAACGGTACGCCCGCCTGGTCGCGGATGGGCGCATGGACG
CCGGGGCCGACGAGCCGGACGGTCCATTGCCACCCTTGGAATTGACGTTG
TGTAAGTATTGTAGTCGGGACTGCCAGCTCGCAAATTTCCATTCGGGCGA
GCATAAGAAGGCGTGCACTTCTCTAAAAATCGCCCGAATCTGTCGCGAAA
ATCAAATGAAGCGTGCGGAAATGAAAGAGGATTGGATCCGAACCTATCTG
ATGGGTTTGGAGGGACATACGAAGATACAGTGGCCAGAGGGCCAGATTCC
TGAGGGCTGGTCGGAGTTTTTCGCGGCGCGGCAACTCGGTCACCAGGTCA
GTGCCAACAGCAACAGCGGTATGTGCCTGAGCGAGCTGTTGCACGAAGGG
TTGACGGTGGCCATGGCGGCGAAAAGGTTCGGGCTTTTGGGTGGGAGGGG
AGGTAGAGAGGGTCATGGTGGGGACCACGGACGCCATCGACGGCCTTTTC
GCTTGCACATCCTGGGGGCGACGGAGACGCAGGAGATCCAACGCTTGCCC
CTGTCGATGGGGGAGCTTGGGGCCTTGCTCTGTCCCTTCTATTTTGAGGA
TGGCCACCCAAGTGAATACCACACAGGACAGCGAAAACTCAACAGTGATA
ACAGACGAGCAGGCATGGCAATATTTTTCCCCTTTCCTGACCGTAGGCCT
TGTAAAAGCGCACGAATTGCACGCCCTGCTCAAAGCTCCTCTCCGGCAAC
GCGGTGAACGCTTACAGCTGCTTTTCGACGAGACAATCCAGAAGCGAGAA
GCAATGCGGCGGATTTGTGCAGAATGTGGGAGACGAGAGGGGGACAAAGG
CGTAGACAAGTTGAAGGTGTGTGGGAAATGCGCTAACATATGGCTTGGAA
GTGTCGGTCTTTGGGCCCCAGGTCATGACCCCGACGGCGTTCCGGGTATC
CTTGGCGGAGGGCAAGGAGACAGCCAGGGACATCACGGTGTGGAAGAGCA
ACCTCCTTTACCACAACTGGGTCCTATCTCACGAGGGAAGCAAAGAGGCG
CCACCGGACCTGGTGGTTGCGTTGAACAGCGGACTGCATACTGGTGGGGA
GATATGGAGAGGTGGGGGGGGCAGGAAGGTGGAAGGGAAGCGGCAGAAGA
AGCACAGCGAATGGTGGCGGCTGTCGTTGAGTCAACCCCCTCCCACGGCA
ATGCCTCCTGTGCTCGATATCATAAGTCCCATGCACAGTGCCCTTTCCTT
TTTTTCCGTGCAAAGACATGCAAGCTTACGCGTTTTCCCCTCCGTCGTTA
CCCCTCCCGGCCTCAGGCGACGATCATCACCACGTGGACGGCTCCATGTG
GCTACCCACCCTTACTTACCTGGTCGCGTCCGGGATCCCATTTCTGCTTA
CCATGTACGACGCGGAGGAAGGGAGGAAGACCCTGGAGATGCTGGAGTCG
TTCGACGCGTGCGTTGCATGGGGCCCCGACTTGAACCCCATGCGGTCGCT
GGTCTTGGAGGAAACGGAGGCACCGGCCTTGCAACGGTACGCCCGCCTGG
TCGCGGATGGGCGCATGGACGCCGGGGCCGACGAGCCGGACGGTCCATTG
CCACCCTTGGAATTGACGTTGTGTAAGTATTGTAGTCGGGACTGCCAGCT
CGCAAATTTCCATTCGGGCGAGCATAAGAAGGCGTGCACTTCTCTAAAAA
TCGCCCGAATCTGTCGCGAAAATCAAATGAAGCGTGCGGAAATGAAAGAG
GATTGGATCCGAACCTATCTGATGGGTTTGGAGGGACATACGAAGATACA
GTGGCCAGAGGGCCAGATTCCTGAGGGCTGGTCGGAGTTTTTCGCGGCGC
GGCAACTCGGTCACCAGGTCAGTGCCAACAGCAACAGCGGTATGTGCCTG
AGCGAGCTGTTGCACGAAGGGTTGACGGTGGCCATGGCGGCGAAAAGGTT
CGGGCTTTTGGGTGGGAGGGGAGGTAGAGAGGGTCATGGTGGGGACCACG
GACGCCATCGACGGCCTTTTCGCTTGCACATCCTGGGGGCGACGGAGACG
CAGGAGATCCAACGCTTGCCCCTGTCGATGGGGGAGCTTGGGGCCTTGCT
CTGTCCCTTCTATTTTGAGGATGGCCACCCAAGTGAATACCACACAGGAC
AGCGAAAACTCAACAGTGATAACAGACGAGCAGGCATGGCAATATTTTTC
CCCTTTCCTGACCGTAGGCCTTGTAAAAGCGCACGAATTGCACGCCCTGC
TCAAAGCTCCTCTCCGGCAACGCGGTGAACGCTTACAGCTGCTTTTCGAC
GAGACAATCCAGAAGCGAGAAGCAATGCGGCGGATTTGTGCAGAATGTGG
GAGACGAGAGGGGGACAAAGGCGTAGACAAGTTGAAGGTGTGTGGGAAAT
GCGCTAACATATG back to top
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