EWM28376.1, cds2299 (CDS) Nannochloropsis gaditana

Overview
NameEWM28376.1
Unique Namecds2299
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:79535..79827 -
Alignment locationCM002459.1:78685..79178 -
Alignment locationCM002459.1:77831..78564 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28376.1
Productzinc finger mynd domain-containing protein 17
Orig transcript idgnl|cribi|Naga_100616g2.10679.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:79535..79827 -
CM002459.1supercontigCM002459.1:78685..79178 -
CM002459.1supercontigCM002459.1:77831..78564 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|585110746|gb|EWM28376.1| (zinc finger mynd domain-containing protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 1036.56 bits (2679), Expect = 0.000e+0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0
Query:    1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMHSALSFFSVQRHASLRVFPSVVTPPGLRRRSSPRGRLHVATHPYLPGRVRDPISAYHVRRGGREEDPGDAGVVRRVRCMGPRLEPHAVAGLGGNGGTGLATVRPPGRGWAHGRRGRRAGRSIATLGIDVV 506
            MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMHSALSFFSVQRHASLRVFPSVVTPPGLRRRSSPRGRLHVATHPYLPGRVRDPISAYHVRRGGREEDPGDAGVVRRVRCMGPRLEPHAVAGLGGNGGTGLATVRPPGRGWAHGRRGRRAGRSIATLGIDVV
Sbjct:    1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMHSALSFFSVQRHASLRVFPSVVTPPGLRRRSSPRGRLHVATHPYLPGRVRDPISAYHVRRGGREEDPGDAGVVRRVRCMGPRLEPHAVAGLGGNGGTGLATVRPPGRGWAHGRRGRRAGRSIATLGIDVV 506          
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|585110745|gb|EWM28375.1| (zinc finger mynd domain-containing protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 330/332 (99.40%), Postives = 331/332 (99.70%), Query Frame = 0
Query:    1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGE 332
            MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTG +
Sbjct:    1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGDD 332          
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|553184826|ref|XP_005854153.1| (hypothetical protein NGA_0166400 [Nannochloropsis gaditana CCMP526] >gi|422294905|gb|EKU22205.1| hypothetical protein NGA_0166400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 480.715 bits (1236), Expect = 3.435e-164
Identity = 243/286 (84.97%), Postives = 244/286 (85.31%), Query Frame = 0
Query:  132 MKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFE----------------------------------------GLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMH 377
            MKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFE                                        GLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYH+WVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIIS  H
Sbjct:    1 MKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGKPPPLPSGAGRINYRHASSRLTVVSPSFLPSLPPSSTPKGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHDWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISDDH 286          
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|1188115255|ref|XP_020780008.1| (putative protein MSS51 homolog, mitochondrial [Boleophthalmus pectinirostris])

HSP 1 Score: 76.6406 bits (187), Expect = 1.335e-11
Identity = 71/295 (24.07%), Postives = 127/295 (43.05%), Query Frame = 0
Query:   61 ETIQKREAMRRICAECGRREGD-KGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAAR-----QLGHQVSANSNSGMCL--------------------SELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSL-AEGKETARDITVWKSNLLYHN-WVLSHEGSKEAPPDLVVALNSGL 327
            E  ++ E   ++CA C +R       + +K C +C N++YC +DCQ  ++   +HKK C+ L++A I R             I  +L+  E  +K   P+ +I +GW ++ A +     +L   ++ N+   + +                    SE +   +T+A   + FGL                +++P  +H++GA +++ +        EL  +      +G+EV + GP+++     R  L A G      I+ +K   LYH  W    E  + A PDLVV  N G 
Sbjct:   16 EMFERMEESYKVCAHCEKRPSQLSKPESMKRCSRCLNVYYCCKDCQKEDW--PKHKKLCSQLRLAAIDR-------------IVEWLLFKEKWSK---PQSEI-KGWDDWLAMQGDLTPRLEPILNGNNMKELWIDAGRPRPDDEDLKQSLWRVTSEFMSRPMTIAWGIRLFGL--------------NPYKKPLTIHLVGAGQSETLGAKLTDYDELSKMFSEH--QGIEVVLVGPEIVNGPVVRPPLHAFGPRHRVFISAYKG--LYHEFWENVVEKKEAAKPDLVVGFNPGF 273          
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|928030530|ref|XP_013863691.1| (PREDICTED: putative protein MSS51 homolog, mitochondrial [Austrofundulus limnaeus])

HSP 1 Score: 68.9366 bits (167), Expect = 6.333e-9
Identity = 78/293 (26.62%), Postives = 119/293 (40.61%), Query Frame = 0
Query:   59 FDETIQKREAMRRICAECGRREGDKGV-DKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICR---------------ENQMK-RAEMK--EDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSL-AEGKETARDITVWKSNLLYHN-WVLSHEGSKEAPPDLVVALNSGLHTG 330
            + E  QK E   + C  C +          LK C +   ++YC++DCQ  ++   +HKK C +L++  I R               E   K  AE+K  +DW+ T    L  H         +   W     +R          +S    SE L   LTV MA +RFGL                + +P  +H+ GA+ ++ +        EL  +  P + +G+EV + GP+V+     R  L A G +    I+ +K   LYH  W    E  + A PDLVV  + G H  
Sbjct:   68 YKEMFQKMEETFKFCTGCNKLPDQLSEGHTLKRCVEXXXVYYCTKDCQRQDW--PQHKKVCKTLRLVAIDRLVEWLMFTGDLPLPTEKWCKPAAEVKSWDDWLPTQ-SDLTQHLDKITAGANMAALWKN--VSRPRPDDDDLRRSSWRIQSEFLSRVLTVGMAVQRFGL--------------DPYVKPLTVHLAGASHSETMGARLTDYDELNHMF-PGH-QGIEVVMVGPEVVDGPIVRPPLRAFGPKHNVYISAYKG--LYHQFWEELVEKEEAAKPDLVVGFHPGFHAN 337          
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|1101569207|ref|XP_018950318.1| (PREDICTED: LOW QUALITY PROTEIN: putative protein MSS51 homolog, mitochondrial [Cyprinus carpio])

HSP 1 Score: 62.3882 bits (150), Expect = 7.468e-7
Identity = 60/239 (25.10%), Postives = 96/239 (40.17%), Query Frame = 0
Query:   61 ETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAAR---------QLGHQVSANSNSGMC----------------LSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVM 274
            E  +K E   +ICA C  R   +    LK C +C N++YCS++CQ  ++   +HK  C  L++A + R  +         W+  Y   L  HT+           W E+ + +          L  Q   +  +  C                 SE L   LT+ M  + F L                + RP  +H++GAT  + +      M ELG +  P + +GLEV + GP+V+
Sbjct:   23 EMFEKIEESFKICARC-ERVPSQVTGSLKRCTRCLNVYYCSKECQKKDW--PQHKLYCDKLRMAAVDRHVE---------WL-VYKGDLPFHTEAWSRPANKVSCWKEWLSMQGDLTPRLEPILSGQNMTDLWTNACRLRPEEAELRESVWRVCSEFLSRPLTIGMGMRMFNL--------------DPYSRPLTIHVVGATHNETLGARTTDMDELGRMF-PGH-QGLEVVMVGPEVV 232          
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|704556208|ref|XP_010181284.1| (PREDICTED: putative protein MSS51 homolog, mitochondrial [Mesitornis unicolor])

HSP 1 Score: 62.3882 bits (150), Expect = 9.768e-7
Identity = 76/309 (24.60%), Postives = 121/309 (39.16%), Query Frame = 0
Query:   59 FDETIQKREAMRRICAECGRR-EGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGR----EGHGGDHGR------HRRPFRL------------------HILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAP-PDLVVALNSGLHTGGEIWRGG 337
            + +  QK E   + CAEC +  +    +  L+ C +C N++YCS  CQ AN+    HKK C  LK+  + R           +W+  +   +   T+      Q  EGW ++F+                 + E L E L   +A +   LL    G+    EG   +  R      H RP  +                  H++GA+  + +        EL  +    +  G+EV + G  V+     R  LA      R + +     LYH++  SH  +K A  PDLVV  + G H   ++  GG
Sbjct:   78 YFDMFQKMEDTFKFCAECKKLPDALPDLKSLRRCKRCQNVYYCSVACQRANWPL--HKKFCKKLKLVALDR---------LVEWL-VFTGDIPFPTETWTKPAQEVEGWEDWFS-----------------MQEQLEEKLGAILAGRYMTLLWANAGKPRPEEGELRESIRRLVTDFHSRPLTIGLGLRLFGIDPLAKALTVHVVGASHIETLNTRLTDYDELMRMFPGHW--GMEVVMVGMDVVDGPIMRPPLAMPAPQGR-VYLSSYKGLYHDFWESHVETKLATCPDLVVGFHPGFHACPDLLAGG 354          
The following BLAST results are available for this feature:
BLAST of EWM28376.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585110746|gb|EWM28376.1|0.000e+0100.00zinc finger mynd domain-containing protein 17 [Nan... [more]
gi|585110745|gb|EWM28375.1|0.000e+099.40zinc finger mynd domain-containing protein 17 [Nan... [more]
gi|553184826|ref|XP_005854153.1|3.435e-16484.97hypothetical protein NGA_0166400 [Nannochloropsis ... [more]
gi|1188115255|ref|XP_020780008.1|1.335e-1124.07putative protein MSS51 homolog, mitochondrial [Bol... [more]
gi|928030530|ref|XP_013863691.1|6.333e-926.62PREDICTED: putative protein MSS51 homolog, mitocho... [more]
gi|1101569207|ref|XP_018950318.1|7.468e-725.10PREDICTED: LOW QUALITY PROTEIN: putative protein M... [more]
gi|704556208|ref|XP_010181284.1|9.768e-724.60PREDICTED: putative protein MSS51 homolog, mitocho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2307rna2307Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications