EWM28376.1, cds2299 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|585110746|gb|EWM28376.1| (zinc finger mynd domain-containing protein 17 [Nannochloropsis gaditana]) HSP 1 Score: 1036.56 bits (2679), Expect = 0.000e+0 Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0
Query: 1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMHSALSFFSVQRHASLRVFPSVVTPPGLRRRSSPRGRLHVATHPYLPGRVRDPISAYHVRRGGREEDPGDAGVVRRVRCMGPRLEPHAVAGLGGNGGTGLATVRPPGRGWAHGRRGRRAGRSIATLGIDVV 506
MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMHSALSFFSVQRHASLRVFPSVVTPPGLRRRSSPRGRLHVATHPYLPGRVRDPISAYHVRRGGREEDPGDAGVVRRVRCMGPRLEPHAVAGLGGNGGTGLATVRPPGRGWAHGRRGRRAGRSIATLGIDVV
Sbjct: 1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMHSALSFFSVQRHASLRVFPSVVTPPGLRRRSSPRGRLHVATHPYLPGRVRDPISAYHVRRGGREEDPGDAGVVRRVRCMGPRLEPHAVAGLGGNGGTGLATVRPPGRGWAHGRRGRRAGRSIATLGIDVV 506
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|585110745|gb|EWM28375.1| (zinc finger mynd domain-containing protein 17 [Nannochloropsis gaditana]) HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0 Identity = 330/332 (99.40%), Postives = 331/332 (99.70%), Query Frame = 0
Query: 1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGE 332
MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTG +
Sbjct: 1 MATQVNTTQDSENSTVITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGDD 332
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|553184826|ref|XP_005854153.1| (hypothetical protein NGA_0166400 [Nannochloropsis gaditana CCMP526] >gi|422294905|gb|EKU22205.1| hypothetical protein NGA_0166400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 480.715 bits (1236), Expect = 3.435e-164 Identity = 243/286 (84.97%), Postives = 244/286 (85.31%), Query Frame = 0
Query: 132 MKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFE----------------------------------------GLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISPMH 377
MKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFE GLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYH+WVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIIS H
Sbjct: 1 MKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGKPPPLPSGAGRINYRHASSRLTVVSPSFLPSLPPSSTPKGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHDWVLSHEGSKEAPPDLVVALNSGLHTGGEIWRGGGGRKVEGKRQKKHSEWWRLSLSQPPPTAMPPVLDIISDDH 286
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|1188115255|ref|XP_020780008.1| (putative protein MSS51 homolog, mitochondrial [Boleophthalmus pectinirostris]) HSP 1 Score: 76.6406 bits (187), Expect = 1.335e-11 Identity = 71/295 (24.07%), Postives = 127/295 (43.05%), Query Frame = 0
Query: 61 ETIQKREAMRRICAECGRREGD-KGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAAR-----QLGHQVSANSNSGMCL--------------------SELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSL-AEGKETARDITVWKSNLLYHN-WVLSHEGSKEAPPDLVVALNSGL 327
E ++ E ++CA C +R + +K C +C N++YC +DCQ ++ +HKK C+ L++A I R I +L+ E +K P+ +I +GW ++ A + +L ++ N+ + + SE + +T+A + FGL +++P +H++GA +++ + EL + +G+EV + GP+++ R L A G I+ +K LYH W E + A PDLVV N G
Sbjct: 16 EMFERMEESYKVCAHCEKRPSQLSKPESMKRCSRCLNVYYCCKDCQKEDW--PKHKKLCSQLRLAAIDR-------------IVEWLLFKEKWSK---PQSEI-KGWDDWLAMQGDLTPRLEPILNGNNMKELWIDAGRPRPDDEDLKQSLWRVTSEFMSRPMTIAWGIRLFGL--------------NPYKKPLTIHLVGAGQSETLGAKLTDYDELSKMFSEH--QGIEVVLVGPEIVNGPVVRPPLHAFGPRHRVFISAYKG--LYHEFWENVVEKKEAAKPDLVVGFNPGF 273
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|928030530|ref|XP_013863691.1| (PREDICTED: putative protein MSS51 homolog, mitochondrial [Austrofundulus limnaeus]) HSP 1 Score: 68.9366 bits (167), Expect = 6.333e-9 Identity = 78/293 (26.62%), Postives = 119/293 (40.61%), Query Frame = 0
Query: 59 FDETIQKREAMRRICAECGRREGDKGV-DKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICR---------------ENQMK-RAEMK--EDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSL-AEGKETARDITVWKSNLLYHN-WVLSHEGSKEAPPDLVVALNSGLHTG 330
+ E QK E + C C + LK C + ++YC++DCQ ++ +HKK C +L++ I R E K AE+K +DW+ T L H + W +R +S SE L LTV MA +RFGL + +P +H+ GA+ ++ + EL + P + +G+EV + GP+V+ R L A G + I+ +K LYH W E + A PDLVV + G H
Sbjct: 68 YKEMFQKMEETFKFCTGCNKLPDQLSEGHTLKRCVEXXXVYYCTKDCQRQDW--PQHKKVCKTLRLVAIDRLVEWLMFTGDLPLPTEKWCKPAAEVKSWDDWLPTQ-SDLTQHLDKITAGANMAALWKN--VSRPRPDDDDLRRSSWRIQSEFLSRVLTVGMAVQRFGL--------------DPYVKPLTVHLAGASHSETMGARLTDYDELNHMF-PGH-QGIEVVMVGPEVVDGPIVRPPLRAFGPKHNVYISAYKG--LYHQFWEELVEKEEAAKPDLVVGFHPGFHAN 337
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|1101569207|ref|XP_018950318.1| (PREDICTED: LOW QUALITY PROTEIN: putative protein MSS51 homolog, mitochondrial [Cyprinus carpio]) HSP 1 Score: 62.3882 bits (150), Expect = 7.468e-7 Identity = 60/239 (25.10%), Postives = 96/239 (40.17%), Query Frame = 0
Query: 61 ETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAAR---------QLGHQVSANSNSGMC----------------LSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVM 274
E +K E +ICA C R + LK C +C N++YCS++CQ ++ +HK C L++A + R + W+ Y L HT+ W E+ + + L Q + + C SE L LT+ M + F L + RP +H++GAT + + M ELG + P + +GLEV + GP+V+
Sbjct: 23 EMFEKIEESFKICARC-ERVPSQVTGSLKRCTRCLNVYYCSKECQKKDW--PQHKLYCDKLRMAAVDRHVE---------WL-VYKGDLPFHTEAWSRPANKVSCWKEWLSMQGDLTPRLEPILSGQNMTDLWTNACRLRPEEAELRESVWRVCSEFLSRPLTIGMGMRMFNL--------------DPYSRPLTIHVVGATHNETLGARTTDMDELGRMF-PGH-QGLEVVMVGPEVV 232
BLAST of EWM28376.1 vs. NCBI_GenBank
Match: gi|704556208|ref|XP_010181284.1| (PREDICTED: putative protein MSS51 homolog, mitochondrial [Mesitornis unicolor]) HSP 1 Score: 62.3882 bits (150), Expect = 9.768e-7 Identity = 76/309 (24.60%), Postives = 121/309 (39.16%), Query Frame = 0
Query: 59 FDETIQKREAMRRICAECGRR-EGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGR----EGHGGDHGR------HRRPFRL------------------HILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSLAEGKETARDITVWKSNLLYHNWVLSHEGSKEAP-PDLVVALNSGLHTGGEIWRGG 337
+ + QK E + CAEC + + + L+ C +C N++YCS CQ AN+ HKK C LK+ + R +W+ + + T+ Q EGW ++F+ + E L E L +A + LL G+ EG + R H RP + H++GA+ + + EL + + G+EV + G V+ R LA R + + LYH++ SH +K A PDLVV + G H ++ GG
Sbjct: 78 YFDMFQKMEDTFKFCAECKKLPDALPDLKSLRRCKRCQNVYYCSVACQRANWPL--HKKFCKKLKLVALDR---------LVEWL-VFTGDIPFPTETWTKPAQEVEGWEDWFS-----------------MQEQLEEKLGAILAGRYMTLLWANAGKPRPEEGELRESIRRLVTDFHSRPLTIGLGLRLFGIDPLAKALTVHVVGASHIETLNTRLTDYDELMRMFPGHW--GMEVVMVGMDVVDGPIMRPPLAMPAPQGR-VYLSSYKGLYHDFWESHVETKLATCPDLVVGFHPGFHACPDLLAGG 354 The following BLAST results are available for this feature:
BLAST of EWM28376.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|