rna2055, rna2055 (mRNA) Nannochloropsis gaditana

Overview
Namerna2055
Unique Namerna2055
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1426
Alignment locationCM002458.1:786899..787985 +

Link to JBrowse

Properties
Property NameValue
Productpeptide deformylase
Orig transcript idgnl|cribi|Naga_100009g109.639.mrna
Orig protein idgnl|cribi|Naga_100009g109.639
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:786899..787985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g109gene1966Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2055rna2055-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28596.1cds2047Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2055 ID=rna2055|Name=rna2055|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp
CAAGAGCGCTCGGACGCAAGTCCTTGCCACTGTAGCAACACCACCAAGGC
GTGGCTTGTCCGTGAGATAGATTGTGTGCATGTGTGGTACATTGTGAACC
CTTTGCAGGTGTAGGCTTCGTGTCCTATGCCCTGTGGCTCCATACAGGGC
AAGTTATCTTGGGTCTGCGCCCGTGGCCGGCACCTACCGTAGTAACCAAC
AAGGCGCCGCCACCTCACCCGTTCACTTCGAAAATACAACTTCCCCACCC
GCGCTTCCACAGCCAGTCCTTTCACTTTTTGACAGCAACCTTCACTTTAC
TCCATCGATATGGCTCGTTCCCGAAGCAGCCGCCCCGCCCCTGCTCGCGC
CCCTGCCCGGGCTCCCCCCCGCCCGTCCTCCGTGCCTGCGGCACCGCAAC
GTTCCGCGCCTCCGGCTCCGCACCAGCCCCAGCAAGGCGGAGGAATGATG
AGCGGATTCGCCTCAACTATTGCCCAGGGATTTGCCTTCGGGACAGGGAG
TGCTGTCGCGCACAGGGTAAGTCGCTGTTTCAGGACCATTCTTGACGCAC
CCCAGTGTGGTTGCACTCGTTGTAGCGGTCTCTTACGTAGAAAGCTTGTT
CGCAGTGGCGACCGTGTGCGTGGGAACGTTGCGGCATAGCGGTTTGAAGG
GGGCTCAGATGTTTGCTGCTTGTCGGGACGGAAAGCCTAGAGAATCCGAA
ACCATGAAATCAATCCGACGACACCTTGTTCCTTTCTCCTTCACAGGCCG
TGGGCGCCGCGGCCGGGGCGTTCTCCGGCGACAGCGAGGCTCCTCACCAG
CAGGAAGCCTACGCCCAGCAGCCCGCACACCAACAGCAGTACGGTGCCCC
CGCGCAGGGAGGCCAGGGTCCTTGCGCCCTCGACGGACAGAACTTTCAGG
CCTGCCTGCAGGCGAACCCCGGCAACGTGGACGCTTGCACTTTCTTGTAC
GAGAGCCTCCAGCAGTGCCAGCGCCAGGCTCAGTTTCAGTAACTCTGGGA
GGAGGCAGGTGTCCTAGAGTGGTGGATAGGTCGGTAATGGGAGTGAAAAA
GGTAGCAGCTCTTAGCCCGAGTGGTACACGATGGGAGCGGTTGGATGGGG
GAATGGGATCAGATCATCTAGAGGAATTTTAGGGTTAAATCTTGTGATGT
GGTGATGGTCCAGGAGGCGAGAGAAAAGGATAGGGATGAGATGGACGGAT
CGTGGTAACTCGGGTCACCTTGCCGCAGCTTTCCTGGTGCTGCGAAGAGA
GGGAAAGTCCGTTTAATTATACGCGGTGGATGTGGGCCAAAAACATACTA
TCGTACACGATCTTGGAAGATCTTTTGAAATGCTTGCCCTTTGCTTTTTC
TTCTGGCTAGTCTCATACCCGCTCTTCGCGAATACACTTTTCACATGACA
ACTCGTGCGGATCCCAATGCGACTTG
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protein sequence of rna2055

>rna2055-protein ID=rna2055-protein|Name=rna2055|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MLRPRAGVSMAAVATTATLFFLGRARASPLVAQAAFHAPRGSPSSYSPAG
ATLVSRGIRTRSGPGSAIANSIRHAWGTLLRSTMVEEVDPGEVEGTDLRV
LKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQ
RLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVE
RSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESK
QKVQPVLDKLVSDFGPGGAL
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mRNA from alignment at CM002458.1:786899..787985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2055 ID=rna2055|Name=rna2055|organism=Nannochloropsis gaditana|type=mRNA|length=1087bp|location=Sequence derived from alignment at CM002458.1:786899..787985+ (Nannochloropsis gaditana)
ATGCTACGACCCCGAGCGGGTGTCTCAATGGCTGCCGTTGCTACCACAGC
CACACTTTTTTTCCTCGGCCGGGCGCGGGCCTCACCTCTTGTGGCTCAAG
CTGCCTTCCACGCGCCGCGAGGGTCTCCATCGAGCTATTCCCCGGCGGGT
GCGACATTAGTGTCCCGTGGAATTCGAACGCGCTCTGGCCCCGGCTCGGC
CATTGCCAATTCGATAAGACACGCGTGGGGCACGTTGCTTCGTTCAACTA
tggtggaggaagtcgaccctggggaagtggagggcACTGATCTTCGCGTC
CTCAAGTATCCAGACCCTCGCCTCCGTGCAGCCAACGCGGAAATCACTGA
GTTTGGTCCGGAAGTGGCCGCTCTCGCCAAGGACATGTTCAAAGTCATGT
ACGCGATGAATGGTGTAGGGCTCGCGGCTCCTCAGGTGGGGGTCAACCAG
CGGCTGATGGTATTCAATCCCCAAGGGGACAGGCTCAAGTGGCTGAACGA
GGTCATCCTCTGCAATCCTGCGATCGTGGAGAAGTCGGGCAAGACGGACA
taatggaggaagggtgcctttcttttccgggCATGGCTGGCGATGTACGG
TTTGGGCTGACCAGGGAGGGACTAAGGGATACAGGATCCTGTGTTGAGAG
AGGAACGCTTTTTCTAACATTGAATCTACTCTCTTGCATGATCTTTACGC
AGGTTGAACGCTCTTTGACCATCAAGGTGACGTTTCAGAATGCTAAAGGA
AAGAAGTTTACCAAGAAGTTTCGTGACTGGGAGGCTCGCATCTTCCAGCA
TGAGTATGACCACCTGGATGGCGTGCTCTACATGGACCGGCTTGTGCCGG
AATCCAAACAGAAGGTATGCCAAGCACGCTTGAGGTCGAGCGGGAGAGTT
GAAGCTAGCAATGTACTGGCACGTGACCGCATGGAAAGCGGTTTGTCGTA
AATTCGATGTTTCCGCAGATCTCTGTTTGGAAGACAAACCAggaaatttt
gaaaaatcaATATGCCTTCTACACACACAGGTGCAGCCAGTGCTGGACAA
GCTGGTTAGTGACTTCGGACCGGGCGGTGCATTGTGA
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Coding sequence (CDS) from alignment at CM002458.1:786899..787985+

>rna2055 ID=rna2055|Name=rna2055|organism=Nannochloropsis gaditana|type=CDS|length=2439bp|location=Sequence derived from alignment at CM002458.1:786899..787985+ (Nannochloropsis gaditana)
ATGCTACGACCCCGAGCGGGTGTCTCAATGGCTGCCGTTGCTACCACAGC
CACACTTTTTTTCCTCGGCCGGGCGCGGGCCTCACCTCTTGTGGCTCAAG
CTGCCTTCCACGCGCCGCGAGGGTCTCCATCGAGCTATTCCCCGGCGGGT
GCGACATTAGTGTCCCGTGGAATTCGAACGCGCTCTGGCCCCGGCTCGGC
CATTGCCAATTCGATAAGACACGCGTGGGGCACGTTGCTTCGTTCAACTA
tggtggaggaagtcgaccctggggaagtggagggcACTGATCTTCGCGTC
CTCAAGTATCCAGACCCTCGCCTCCGTGCAGCCAACGCGGAAATCACTGA
GTTTGGTCCGGAAGTGGCCGCTCTCGCCAAGGACATGTTCAAAGTCATGT
ACGCGATGAATGGTGTAGGGCTCGCGGCTCCTCAGGTGGGGGTCAACCAG
CGGCTGATGGTATTCAATCCCCAAGGGGACAGGCTCAAGTGGCTGAACGA
GGTCATCCTCTGCAATCCTGCGATCGTGGAGAAGTCGGGCAAGACGGACA
taatggaggaagggtgcctttcttttccgggCATGGCTGGCGATGTTGAA
CGCTCTTTGACCATCAAGGTGACGTTTCAGAATGCTAAAGGAAAGAAGTT
TACCAAGAAGTTTCGTGACTGGGAGGCTCGCATCTTCCAGCATGAGTATG
ACCACCTGGATGGCGTGCTCTACATGGACCGGCTTGTGCCGGAATCCAAA
CAGAAGGTGCAGCCAGTGCTGGACAAGCTGGTTAGTGACTTCGGACCGGG
CGGTGCATTGTGAATGCTACGACCCCGAGCGGGTGTCTCAATGGCTGCCG
TTGCTACCACAGCCACACTTTTTTTCCTCGGCCGGGCGCGGGCCTCACCT
CTTGTGGCTCAAGCTGCCTTCCACGCGCCGCGAGGGTCTCCATCGAGCTA
TTCCCCGGCGGGTGCGACATTAGTGTCCCGTGGAATTCGAACGCGCTCTG
GCCCCGGCTCGGCCATTGCCAATTCGATAAGACACGCGTGGGGCACGTTG
CTTCGTTCAACTAtggtggaggaagtcgaccctggggaagtggagggcAC
TGATCTTCGCGTCCTCAAGTATCCAGACCCTCGCCTCCGTGCAGCCAACG
CGGAAATCACTGAGTTTGGTCCGGAAGTGGCCGCTCTCGCCAAGGACATG
TTCAAAGTCATGTACGCGATGAATGGTGTAGGGCTCGCGGCTCCTCAGGT
GGGGGTCAACCAGCGGCTGATGGTATTCAATCCCCAAGGGGACAGGCTCA
AGTGGCTGAACGAGGTCATCCTCTGCAATCCTGCGATCGTGGAGAAGTCG
GGCAAGACGGACAtaatggaggaagggtgcctttcttttccgggCATGGC
TGGCGATGTTGAACGCTCTTTGACCATCAAGGTGACGTTTCAGAATGCTA
AAGGAAAGAAGTTTACCAAGAAGTTTCGTGACTGGGAGGCTCGCATCTTC
CAGCATGAGTATGACCACCTGGATGGCGTGCTCTACATGGACCGGCTTGT
GCCGGAATCCAAACAGAAGGTGCAGCCAGTGCTGGACAAGCTGGTTAGTG
ACTTCGGACCGGGCGGTGCATTGTGAATGCTACGACCCCGAGCGGGTGTC
TCAATGGCTGCCGTTGCTACCACAGCCACACTTTTTTTCCTCGGCCGGGC
GCGGGCCTCACCTCTTGTGGCTCAAGCTGCCTTCCACGCGCCGCGAGGGT
CTCCATCGAGCTATTCCCCGGCGGGTGCGACATTAGTGTCCCGTGGAATT
CGAACGCGCTCTGGCCCCGGCTCGGCCATTGCCAATTCGATAAGACACGC
GTGGGGCACGTTGCTTCGTTCAACTAtggtggaggaagtcgaccctgggg
aagtggagggcACTGATCTTCGCGTCCTCAAGTATCCAGACCCTCGCCTC
CGTGCAGCCAACGCGGAAATCACTGAGTTTGGTCCGGAAGTGGCCGCTCT
CGCCAAGGACATGTTCAAAGTCATGTACGCGATGAATGGTGTAGGGCTCG
CGGCTCCTCAGGTGGGGGTCAACCAGCGGCTGATGGTATTCAATCCCCAA
GGGGACAGGCTCAAGTGGCTGAACGAGGTCATCCTCTGCAATCCTGCGAT
CGTGGAGAAGTCGGGCAAGACGGACAtaatggaggaagggtgcctttctt
ttccgggCATGGCTGGCGATGTTGAACGCTCTTTGACCATCAAGGTGACG
TTTCAGAATGCTAAAGGAAAGAAGTTTACCAAGAAGTTTCGTGACTGGGA
GGCTCGCATCTTCCAGCATGAGTATGACCACCTGGATGGCGTGCTCTACA
TGGACCGGCTTGTGCCGGAATCCAAACAGAAGGTGCAGCCAGTGCTGGAC
AAGCTGGTTAGTGACTTCGGACCGGGCGGTGCATTGTGA
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Synonyms
Publications