EWM28596.1, cds2047 (CDS) Nannochloropsis gaditana

Overview
NameEWM28596.1
Unique Namecds2047
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:786899..787492 +
Alignment locationCM002458.1:787601..787762 +
Alignment locationCM002458.1:787929..787985 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28596.1
Productpeptide deformylase
Orig transcript idgnl|cribi|Naga_100009g109.639.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:786899..787492 +
CM002458.1supercontigCM002458.1:787601..787762 +
CM002458.1supercontigCM002458.1:787929..787985 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0042586peptide deformylase activity
GO:0005506iron ion binding
Vocabulary: INTERPRO
TermDefinition
IPR023635Peptide_deformylase
IPR000181Fmet_deformylase
Homology
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|585111014|gb|EWM28596.1| (peptide deformylase [Nannochloropsis gaditana])

HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MLRPRAGVSMAAVATTATLFFLGRARASPLVAQAAFHAPRGSPSSYSPAGATLVSRGIRTRSGPGSAIANSIRHAWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
            MLRPRAGVSMAAVATTATLFFLGRARASPLVAQAAFHAPRGSPSSYSPAGATLVSRGIRTRSGPGSAIANSIRHAWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL
Sbjct:    1 MLRPRAGVSMAAVATTATLFFLGRARASPLVAQAAFHAPRGSPSSYSPAGATLVSRGIRTRSGPGSAIANSIRHAWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|1210516753|dbj|GAX24242.1| (peptide deformylase [Fistulifera solaris])

HSP 1 Score: 243.817 bits (621), Expect = 9.820e-78
Identity = 122/194 (62.89%), Postives = 145/194 (74.74%), Query Frame = 0
Query:   80 LRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEIT--EFGP-EVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
            L +++ EEVDPG VEGTDLR++KYP P LR  N  +T  E     +A LAK+MF VMYA  GVGLAAPQVGVN+RLMV+N  GD  KWL+EVI+ NP IVE S   ++  EGCLSFPGM G VERS  IKV   N KGKK  +KF DWEARIFQHEYDHLDG +Y+DRL  E ++KVQP L++L++DFG GGAL
Sbjct:   26 LLASLQEEVDPGVVEGTDLRIVKYPHPALRKPNELVTLEELKDGSIAKLAKEMFMVMYAAAGVGLAAPQVGVNKRLMVYNQSGDPKKWLDEVIMVNPTIVESSEARNVETEGCLSFPGMDGPVERSKWIKVEAMNMKGKKIKRKFTDWEARIFQHEYDHLDGTVYIDRLDEEGRRKVQPRLNELIADFGEGGAL 219          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|1210512538|dbj|GAX28395.1| (peptide deformylase [Fistulifera solaris])

HSP 1 Score: 237.654 bits (605), Expect = 2.340e-75
Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 0
Query:   80 LRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEIT--EFGP-EVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
            L +++ EEVDPG VEGT+LR++KYP P LR  N  +T  E     +A LAK+MF VMYA  GVGLAAPQVGVN+RLMV+N  GD  KWL+EVI+ NP IVE S   ++  EGCLSFPGM G VERS  IKV   N KGKKF +KF DWEARIFQHEYDHLDG +Y+DRL  E + KVQ  L++L+++FG GGAL
Sbjct:   26 LLASLQEEVDPGIVEGTELRIVKYPHPALRKPNELVTVEELKDGSIAKLAKEMFMVMYAAAGVGLAAPQVGVNKRLMVYNQSGDPKKWLDEVIMVNPTIVEFSEARNVETEGCLSFPGMDGPVERSKWIKVEAMNMKGKKFKRKFTDWEARIFQHEYDHLDGTVYIDRLDEEGRSKVQHRLNELIAEFGEGGAL 219          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|223994725|ref|XP_002287046.1| (dubious peptide deformylase, partial [Thalassiosira pseudonana CCMP1335] >gi|220978361|gb|EED96687.1| dubious peptide deformylase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 227.639 bits (579), Expect = 6.483e-72
Identity = 118/180 (65.56%), Postives = 137/180 (76.11%), Query Frame = 0
Query:   96 TDLRVLKYPDPRLRAANAEITEF-----GPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
            TDLRVLKYP P LRA NAEITE      G E++ +AK+MF VMYA NG GLAAPQVG+N+RLMV+N  GD  +W+ EVI+ NP IVE S  TDI +EGCLSFP M GDV+RS  IKV  QN KGKK  KKF  WEARIFQHEYDHLDGV+Y+DRL  E +++VQ  LD+LV +FG GGAL
Sbjct:    1 TDLRVLKYPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMVYNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKGKKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVEEFGEGGAL 180          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|922853526|gb|KOO22135.1| (peptide deformylase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 225.328 bits (573), Expect = 1.847e-70
Identity = 104/179 (58.10%), Postives = 131/179 (73.18%), Query Frame = 0
Query:   86 EEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDF 264
            +E++PG V GT+LR+L+YP P LRA NA++TEF  E+  L K+MF +MYA  GVGLAAPQ+G+N+RLMVFNP+GD  KWL+E++LCNP I E S  T + EEGCLSFPG   DV RS  I+V +Q   GK   KK R WEARIFQHEYDHLDG LY+DRL    + +V+  LD L+  +
Sbjct:   36 DEINPGAVAGTNLRILEYPHPLLRAPNADVTEFDDELKQLTKEMFDIMYASRGVGLAAPQLGINKRLMVFNPEGDPKKWLSELVLCNPEIEEYSTSTALEEEGCLSFPGFTADVMRSQNIQVKWQGLNGKVKRKKLRGWEARIFQHEYDHLDGTLYVDRLGEGERSRVKCHLDDLIRSY 214          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|397619820|gb|EJK65417.1| (hypothetical protein THAOC_13720 [Thalassiosira oceanica])

HSP 1 Score: 220.32 bits (560), Expect = 1.214e-68
Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 0
Query:   75 AWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANA-----EITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
            +W  L  +   EEVDPG VEGTDLRVLKYP P LR  N      ++T  G E++ +AK+MF VMYA NGVGLAAPQVG+N+RLMV+N  GD  KW+ E I  NP IVE S   DI  EGCLSFP M GDV+RS  IK+  QN KGKK  KKF+ WEAR+FQHEYDHL+  +Y+DRL  E +++VQP L++LV +FG GG L
Sbjct:   10 SWAALFSTK--EEVDPGVVEGTDLRVLKYPHPSLRRENEVIPDEQLTGPGCEISKIAKEMFLVMYATNGVGLAAPQVGINKRLMVYNDTGDPKKWMKENIFVNPKIVEYSDAKDIETEGCLSFPDMNGDVQRSKWIKIEAQNLKGKKIKKKFKGWEARVFQHEYDHLERTVYIDRLTDEGRKEVQPRLNELVGEFGDGGEL 208          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|551627162|ref|XP_005793562.1| (hypothetical protein EMIHUDRAFT_46715, partial [Emiliania huxleyi CCMP1516] >gi|485648224|gb|EOD41133.1| hypothetical protein EMIHUDRAFT_46715, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 211.846 bits (538), Expect = 5.074e-66
Identity = 100/164 (60.98%), Postives = 123/164 (75.00%), Query Frame = 0
Query:   98 LRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLV 261
            LR+L+YP P LRA NAE+ +F   +  LAK+MF +MYA  GVGLAAPQ+G+NQRLMVFNP+G + KWL+EV+LCNP IV+      +  EGCLSFPG   DVER+  IKV +Q+AKGK   KK   WEARIFQHEYDHLDGVLY+DRL    + +VQP LD+L+
Sbjct:    1 LRILEYPHPLLRAPNAEVRDFDAGLQRLAKEMFSIMYASRGVGLAAPQLGINQRLMVFNPEGRKEKWLSEVVLCNPRIVDSGPGGPVEVEGCLSFPGFTADVERAGWIKVEYQDAKGKVRRKKLVGWEARIFQHEYDHLDGVLYVDRLSEAERSRVQPELDQLI 164          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|873227183|emb|CEM18852.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 214.927 bits (546), Expect = 7.481e-66
Identity = 108/190 (56.84%), Postives = 134/190 (70.53%), Query Frame = 0
Query:   86 EEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPE-VAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDF----GPGGAL 270
            EEVDPG V+G  L ++KYP P LRA N EI EF  E V  L   MFK+MYA  GVGLAAPQVG+N+RLMVFNP G   +  +E+IL NP IV++S + D+M+EGCLSFP M G V RS+ I V +    GK   +    WEARIFQHEYDH+DGV+Y+DRL PE++++VQP LD+LV D+    G  GAL
Sbjct:   69 EEVDPGVVDG--LEIVKYPHPALRAKNEEIREFSTEGVKRLVTRMFKLMYAAGGVGLAAPQVGINKRLMVFNPSGRMRRKDSEMILLNPQIVDQSLQKDVMDEGCLSFPDMNGPVTRSMEITVQYNTLDGKSTKRTLSGWEARIFQHEYDHIDGVVYIDRLPPEARERVQPQLDRLVKDYEERTGKPGAL 256          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|1072229303|gb|OEU14038.1| (Pep_deformylase-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 213.001 bits (541), Expect = 4.264e-65
Identity = 113/188 (60.11%), Postives = 136/188 (72.34%), Query Frame = 0
Query:   86 EEVDPGEVEGTDLRVLKYPDPRLRAANAEIT--EFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDF-GPGGAL 270
            EE+DPG VEGTDLR++KYP P LRA N E+   +    ++ L K+M KVMYA  GVGLAAPQVGVN+RLMV+NP GD  KWL E IL NP IVE S   D   EGCLSFP M G+V RS  IKV     +GKK  KKF+ WEA IFQHEYDHLDGV+Y+DRL  E+++KVQP L++L+ ++ G  GAL
Sbjct:   74 EEIDPGVVEGTDLRIVKYPHPCLRAKNDEVILPDEQEHISKLGKEMLKVMYAAEGVGLAAPQVGVNKRLMVYNPTGDSKKWLEEKILVNPKIVEFSEAKDEEMEGCLSFPQMNGEVNRSKWIKVEAMTPRGKKVKKKFKGWEAVIFQHEYDHLDGVVYIDRLADETREKVQPRLNELIEEYDGDDGAL 261          
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|544210432|ref|XP_005535617.1| (polypeptide deformylase [Cyanidioschyzon merolae strain 10D] >gi|449015929|dbj|BAM79331.1| polypeptide deformylase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 213.001 bits (541), Expect = 5.505e-65
Identity = 100/178 (56.18%), Postives = 130/178 (73.03%), Query Frame = 0
Query:   84 MVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLV 261
            +VEEVDPG V G  LR+++YP   LRA N  +T F   +  L +DMFKVMYA  GVGLAAPQVG+N+R+MVFNP+GD   WL+EV L NP I+E+S  T+   EGCLSFPG++GD+ERSL IKV      GK+F  K++ W ARIFQHEYDHLDGVL++DR+ P  +++ +  L+ L+
Sbjct:   77 LVEEVDPGIVPGVSLRIVRYPHRVLRAPNEPVTVFDDALLKLVRDMFKVMYASRGVGLAAPQVGINKRVMVFNPKGDPRAWLSEVALVNPRIIERSEATEEGMEGCLSFPGVSGDIERSLMIKVEAMKPNGKRFQVKYQGWTARIFQHEYDHLDGVLFIDRMKPAVREQNRGALENLM 254          
The following BLAST results are available for this feature:
BLAST of EWM28596.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111014|gb|EWM28596.1|0.000e+0100.00peptide deformylase [Nannochloropsis gaditana][more]
gi|1210516753|dbj|GAX24242.1|9.820e-7862.89peptide deformylase [Fistulifera solaris][more]
gi|1210512538|dbj|GAX28395.1|2.340e-7561.86peptide deformylase [Fistulifera solaris][more]
gi|223994725|ref|XP_002287046.1|6.483e-7265.56dubious peptide deformylase, partial [Thalassiosir... [more]
gi|922853526|gb|KOO22135.1|1.847e-7058.10peptide deformylase [Chrysochromulina sp. CCMP291][more]
gi|397619820|gb|EJK65417.1|1.214e-6858.71hypothetical protein THAOC_13720 [Thalassiosira oc... [more]
gi|551627162|ref|XP_005793562.1|5.074e-6660.98hypothetical protein EMIHUDRAFT_46715, partial [Em... [more]
gi|873227183|emb|CEM18852.1|7.481e-6656.84unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072229303|gb|OEU14038.1|4.264e-6560.11Pep_deformylase-domain-containing protein [Fragila... [more]
gi|544210432|ref|XP_005535617.1|5.505e-6556.18polypeptide deformylase [Cyanidioschyzon merolae s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2055rna2055Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications