EWM28596.1, cds2047 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|585111014|gb|EWM28596.1| (peptide deformylase [Nannochloropsis gaditana]) HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query: 1 MLRPRAGVSMAAVATTATLFFLGRARASPLVAQAAFHAPRGSPSSYSPAGATLVSRGIRTRSGPGSAIANSIRHAWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
MLRPRAGVSMAAVATTATLFFLGRARASPLVAQAAFHAPRGSPSSYSPAGATLVSRGIRTRSGPGSAIANSIRHAWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL
Sbjct: 1 MLRPRAGVSMAAVATTATLFFLGRARASPLVAQAAFHAPRGSPSSYSPAGATLVSRGIRTRSGPGSAIANSIRHAWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|1210516753|dbj|GAX24242.1| (peptide deformylase [Fistulifera solaris]) HSP 1 Score: 243.817 bits (621), Expect = 9.820e-78 Identity = 122/194 (62.89%), Postives = 145/194 (74.74%), Query Frame = 0
Query: 80 LRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEIT--EFGP-EVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
L +++ EEVDPG VEGTDLR++KYP P LR N +T E +A LAK+MF VMYA GVGLAAPQVGVN+RLMV+N GD KWL+EVI+ NP IVE S ++ EGCLSFPGM G VERS IKV N KGKK +KF DWEARIFQHEYDHLDG +Y+DRL E ++KVQP L++L++DFG GGAL
Sbjct: 26 LLASLQEEVDPGVVEGTDLRIVKYPHPALRKPNELVTLEELKDGSIAKLAKEMFMVMYAAAGVGLAAPQVGVNKRLMVYNQSGDPKKWLDEVIMVNPTIVESSEARNVETEGCLSFPGMDGPVERSKWIKVEAMNMKGKKIKRKFTDWEARIFQHEYDHLDGTVYIDRLDEEGRRKVQPRLNELIADFGEGGAL 219
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|1210512538|dbj|GAX28395.1| (peptide deformylase [Fistulifera solaris]) HSP 1 Score: 237.654 bits (605), Expect = 2.340e-75 Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 0
Query: 80 LRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANAEIT--EFGP-EVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
L +++ EEVDPG VEGT+LR++KYP P LR N +T E +A LAK+MF VMYA GVGLAAPQVGVN+RLMV+N GD KWL+EVI+ NP IVE S ++ EGCLSFPGM G VERS IKV N KGKKF +KF DWEARIFQHEYDHLDG +Y+DRL E + KVQ L++L+++FG GGAL
Sbjct: 26 LLASLQEEVDPGIVEGTELRIVKYPHPALRKPNELVTVEELKDGSIAKLAKEMFMVMYAAAGVGLAAPQVGVNKRLMVYNQSGDPKKWLDEVIMVNPTIVEFSEARNVETEGCLSFPGMDGPVERSKWIKVEAMNMKGKKFKRKFTDWEARIFQHEYDHLDGTVYIDRLDEEGRSKVQHRLNELIAEFGEGGAL 219
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|223994725|ref|XP_002287046.1| (dubious peptide deformylase, partial [Thalassiosira pseudonana CCMP1335] >gi|220978361|gb|EED96687.1| dubious peptide deformylase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 227.639 bits (579), Expect = 6.483e-72 Identity = 118/180 (65.56%), Postives = 137/180 (76.11%), Query Frame = 0
Query: 96 TDLRVLKYPDPRLRAANAEITEF-----GPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
TDLRVLKYP P LRA NAEITE G E++ +AK+MF VMYA NG GLAAPQVG+N+RLMV+N GD +W+ EVI+ NP IVE S TDI +EGCLSFP M GDV+RS IKV QN KGKK KKF WEARIFQHEYDHLDGV+Y+DRL E +++VQ LD+LV +FG GGAL
Sbjct: 1 TDLRVLKYPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMVYNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKGKKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVEEFGEGGAL 180
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|922853526|gb|KOO22135.1| (peptide deformylase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 225.328 bits (573), Expect = 1.847e-70 Identity = 104/179 (58.10%), Postives = 131/179 (73.18%), Query Frame = 0
Query: 86 EEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDF 264
+E++PG V GT+LR+L+YP P LRA NA++TEF E+ L K+MF +MYA GVGLAAPQ+G+N+RLMVFNP+GD KWL+E++LCNP I E S T + EEGCLSFPG DV RS I+V +Q GK KK R WEARIFQHEYDHLDG LY+DRL + +V+ LD L+ +
Sbjct: 36 DEINPGAVAGTNLRILEYPHPLLRAPNADVTEFDDELKQLTKEMFDIMYASRGVGLAAPQLGINKRLMVFNPEGDPKKWLSELVLCNPEIEEYSTSTALEEEGCLSFPGFTADVMRSQNIQVKWQGLNGKVKRKKLRGWEARIFQHEYDHLDGTLYVDRLGEGERSRVKCHLDDLIRSY 214
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|397619820|gb|EJK65417.1| (hypothetical protein THAOC_13720 [Thalassiosira oceanica]) HSP 1 Score: 220.32 bits (560), Expect = 1.214e-68 Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 0
Query: 75 AWGTLLRSTMVEEVDPGEVEGTDLRVLKYPDPRLRAANA-----EITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
+W L + EEVDPG VEGTDLRVLKYP P LR N ++T G E++ +AK+MF VMYA NGVGLAAPQVG+N+RLMV+N GD KW+ E I NP IVE S DI EGCLSFP M GDV+RS IK+ QN KGKK KKF+ WEAR+FQHEYDHL+ +Y+DRL E +++VQP L++LV +FG GG L
Sbjct: 10 SWAALFSTK--EEVDPGVVEGTDLRVLKYPHPSLRRENEVIPDEQLTGPGCEISKIAKEMFLVMYATNGVGLAAPQVGINKRLMVYNDTGDPKKWMKENIFVNPKIVEYSDAKDIETEGCLSFPDMNGDVQRSKWIKIEAQNLKGKKIKKKFKGWEARVFQHEYDHLERTVYIDRLTDEGRKEVQPRLNELVGEFGDGGEL 208
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|551627162|ref|XP_005793562.1| (hypothetical protein EMIHUDRAFT_46715, partial [Emiliania huxleyi CCMP1516] >gi|485648224|gb|EOD41133.1| hypothetical protein EMIHUDRAFT_46715, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 211.846 bits (538), Expect = 5.074e-66 Identity = 100/164 (60.98%), Postives = 123/164 (75.00%), Query Frame = 0
Query: 98 LRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLV 261
LR+L+YP P LRA NAE+ +F + LAK+MF +MYA GVGLAAPQ+G+NQRLMVFNP+G + KWL+EV+LCNP IV+ + EGCLSFPG DVER+ IKV +Q+AKGK KK WEARIFQHEYDHLDGVLY+DRL + +VQP LD+L+
Sbjct: 1 LRILEYPHPLLRAPNAEVRDFDAGLQRLAKEMFSIMYASRGVGLAAPQLGINQRLMVFNPEGRKEKWLSEVVLCNPRIVDSGPGGPVEVEGCLSFPGFTADVERAGWIKVEYQDAKGKVRRKKLVGWEARIFQHEYDHLDGVLYVDRLSEAERSRVQPELDQLI 164
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|873227183|emb|CEM18852.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 214.927 bits (546), Expect = 7.481e-66 Identity = 108/190 (56.84%), Postives = 134/190 (70.53%), Query Frame = 0
Query: 86 EEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPE-VAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDF----GPGGAL 270
EEVDPG V+G L ++KYP P LRA N EI EF E V L MFK+MYA GVGLAAPQVG+N+RLMVFNP G + +E+IL NP IV++S + D+M+EGCLSFP M G V RS+ I V + GK + WEARIFQHEYDH+DGV+Y+DRL PE++++VQP LD+LV D+ G GAL
Sbjct: 69 EEVDPGVVDG--LEIVKYPHPALRAKNEEIREFSTEGVKRLVTRMFKLMYAAGGVGLAAPQVGINKRLMVFNPSGRMRRKDSEMILLNPQIVDQSLQKDVMDEGCLSFPDMNGPVTRSMEITVQYNTLDGKSTKRTLSGWEARIFQHEYDHIDGVVYIDRLPPEARERVQPQLDRLVKDYEERTGKPGAL 256
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|1072229303|gb|OEU14038.1| (Pep_deformylase-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 213.001 bits (541), Expect = 4.264e-65 Identity = 113/188 (60.11%), Postives = 136/188 (72.34%), Query Frame = 0
Query: 86 EEVDPGEVEGTDLRVLKYPDPRLRAANAEIT--EFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDF-GPGGAL 270
EE+DPG VEGTDLR++KYP P LRA N E+ + ++ L K+M KVMYA GVGLAAPQVGVN+RLMV+NP GD KWL E IL NP IVE S D EGCLSFP M G+V RS IKV +GKK KKF+ WEA IFQHEYDHLDGV+Y+DRL E+++KVQP L++L+ ++ G GAL
Sbjct: 74 EEIDPGVVEGTDLRIVKYPHPCLRAKNDEVILPDEQEHISKLGKEMLKVMYAAEGVGLAAPQVGVNKRLMVYNPTGDSKKWLEEKILVNPKIVEFSEAKDEEMEGCLSFPQMNGEVNRSKWIKVEAMTPRGKKVKKKFKGWEAVIFQHEYDHLDGVVYIDRLADETREKVQPRLNELIEEYDGDDGAL 261
BLAST of EWM28596.1 vs. NCBI_GenBank
Match: gi|544210432|ref|XP_005535617.1| (polypeptide deformylase [Cyanidioschyzon merolae strain 10D] >gi|449015929|dbj|BAM79331.1| polypeptide deformylase [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 213.001 bits (541), Expect = 5.505e-65 Identity = 100/178 (56.18%), Postives = 130/178 (73.03%), Query Frame = 0
Query: 84 MVEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLV 261
+VEEVDPG V G LR+++YP LRA N +T F + L +DMFKVMYA GVGLAAPQVG+N+R+MVFNP+GD WL+EV L NP I+E+S T+ EGCLSFPG++GD+ERSL IKV GK+F K++ W ARIFQHEYDHLDGVL++DR+ P +++ + L+ L+
Sbjct: 77 LVEEVDPGIVPGVSLRIVRYPHRVLRAPNEPVTVFDDALLKLVRDMFKVMYASRGVGLAAPQVGINKRVMVFNPKGDPRAWLSEVALVNPRIIERSEATEEGMEGCLSFPGVSGDIERSLMIKVEAMKPNGKRFQVKYQGWTARIFQHEYDHLDGVLFIDRMKPAVREQNRGALENLM 254 The following BLAST results are available for this feature:
BLAST of EWM28596.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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