rna1966, rna1966 (mRNA) Nannochloropsis gaditana

Overview
Namerna1966
Unique Namerna1966
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2401
Alignment locationCM002458.1:588626..590036 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g53.4859.mrna
Orig protein idgnl|cribi|Naga_100002g53.4859
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:588626..590036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g53gene1877Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1966rna1966-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28740.1cds1961Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1966 ID=rna1966|Name=rna1966|organism=Nannochloropsis gaditana|type=mRNA|length=2401bp
TGCATTTCGGCGTTTACGTCACTAAAGTTGTTGTTCTGCTGAGTATGTTC
AAATTATGTGATGCACCGATAGAAATCAATGCCAACAGGCTGATTTTCCC
GGCCATGCTCCTACCTTCTGCTGGTGCTTCGACGTAGCTGGGTCTTACAA
CCATCCTCAAGTTCCCCACTATTTCTAGTAGTACGTATTGATTTCCGTGA
GGCGCATTCTTACGCATTATATGGTGCCACACGGCGAGCGGGAACATTCC
GCGGTAACGAAGTCGCAAGAAATGTAATCAACATCAGAACATGCAGCAAT
GATCCACTTCCCTTTTTGTGTACCAAGGAAAATAAGAGCTTCCGCTTTTT
TTGAAACCATAAAAAGGTGTGTTATCGGGAGTCATGCCCTTTCTTCACAT
CGCCTTCTCCTTTTTCTTACATGCATAGGACTATAGATTTGGTGTTATCT
TCTGACCCTTTCTTCCTAAGGTGACAAGCTAATACTTGCTCCTCCATCAT
GAAGAATACTCGATCGCTCGCTTTTGGGGCAGTATTGCTGGTTTTAGTGG
CAGCTGCGGAGGAGGGCTTCATGGATAAAGCAGCAGACAAGATCAAACAC
GTCGTAGGGTTAGAGACGGCAGAGGAGGCTCCGAAGTACGAAGCATACGA
AAAAGGTCGAGGTACAGTGAAGCATGGCGAAGACGTCATGGAGCGTGCGA
AAGAGAAAATTGGAAACATCTTTCACCATCATGCGAAGGAGCCAGCAGAT
CTTATCATGCAAGAAGCAAAGTACCAAGCGAATGAGCAAGCAAATGCAGT
GAAGGCTCATGGGCATGGAATATACGATACTGTTAAAGAAACAGTGACCG
CACCCTTCCACTCAGCGAAAGAAAAAAGTCAGGAAATGGCGGAGTCCGCC
CATGAAAGGGCAGAAGCGGGTGTGGGGTGTGCAAATGAGGCGATGAAGGA
AGCGCGCCGACAAGGCATGCAGGGCTATGAAACGACAAAGGGTAAAACAG
AAGAGACAATTCAGAAGGGTCAAAGCAAGATCCGGCAGATGAAGGACAAT
GTTGAAAATATGCTGCAGCAGGGGAAAGAGAAAGTGGACGAAAACATTGA
AGCTGTCAAAGGGGTGACTGGGGAAAAAATTGAGCATGCAAAAGAGTATG
CCCACGAAGTAAAACAGAAAGGAGAAGAAGGTGCTGCATTTAAAAATGGC
ATCAAAGATGAGACGATGGGATCTGGTGAAACCCTGGTGGGGACTGCTAC
ACGTAAAATGAAGGAAGTTTTCGGCGGAGAGCACGTAAACCGGAAAGGTC
AGAATGCGATGGATACAGTGGAAGAAAAGTCAAGGGAAGCCATGGACAGA
GCCAAGGAAGGAGTTGAGGAGCTCTGAACGAAATTTCAGTCTACATCATA
ATCCAGTATCATTGCGGCAATCTTGGACCAGTTGAGCTGAAAGACCGCGG
AAATGGCATCGATGGAAGAGAAATATGATAAGACAAACAAAGACTATGCG
GTGAAATGCTTGACATTGTAAAAAAGCTCCAAAGACGCCTTCCATCGAAT
TGCTTGGCAAAGTCGTCAATCTTTTTGAATCCGTTTTACGATCATCCCTA
ATTTTATGCATGGAGCTCTCTGCACACTACATAACAGGCAACAGAAGAAA
AACACAATAGAGCTGCGTGCATTAGCCTCCGAAAAGAAGCTGGGATTCTT
CCAGATACCGCCATACCACAGCAAACAACATTCCTTGAAGAGCGTTTGCA
GCCAACCTGAATGAGGGAGGGGGAGAAATGCCCTTTAAGCCACCTGTACT
TCCGCAGCCCTTCTGATGTTAAGTGTACCCCAAAAGCCCGCCGACATCAA
GTCCCAACCCGCGAAAAACCTTGTTTGCAAGCCTCGAGCAAATAAACCCT
GAATGCCATCCTCATCCAGTATGTGACGTAGAGCTTGCCGGTATGTAATT
GATGATTCTGACGTCTGTTTGGTAGTTTTGATAACGCGGAAGCAATTCGA
GCACACGTCCGATGTTGTGGAAGAGCATAAACCTAGACACACACAGTGCA
TGAATCAAATGTAAGCACAAATTGAATTTGCTCCAATCGACGGCTTGTAG
TATTAACCCGAAAGCTTTTTCTTTGGCACACCACAAAATTACCTAAGAAG
GCATTTCTACCCAGACGCGGAAAAATTTCACCTGAAGGTGGTACGGGGAT
AATCGACGATAAATAATTGAAGGTTAGAAAGTAAGGCCAGTGTCCCGCAG
CCGTGGCAACTGCTTGAATAACAGCTCCTTGATAAAGTGAAGGAATTCCC
TCTCTTCTTAGCCGCGCTGCGAGCTGCGGCAAAGCTTTTGAGCCTTGGAC
CTGTGTATGCGTTAGTGAGTGAGCTCTTTGAAGAGATTTTACACCGCTAT
T
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protein sequence of rna1966

>rna1966-protein ID=rna1966-protein|Name=rna1966|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAY
EKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANA
VKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMK
EARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENI
EAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTA
TRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKVRDLTDLEAVLFLI
SCF
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mRNA from alignment at CM002458.1:588626..590036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1966 ID=rna1966|Name=rna1966|organism=Nannochloropsis gaditana|type=mRNA|length=1411bp|location=Sequence derived from alignment at CM002458.1:588626..590036+ (Nannochloropsis gaditana)
TGCATTTCGGCGTTTACGTCACTAAAGTTGTTGTTCTGCTGAGTATGTTC
AAATTATGTGATGCACCGATAGAAATCAATGCCAACAGGCTGATTTTCCC
GGCCATGCTCCTACCTTCTGCTGGTGCTTCGACGTAGCTGGGTCTTACAA
CCATCCTCAAGTTCCCCACTATTTCTAGTAGTACGTATTGATTTCCGTGA
GGCGCATTCTTACGCATTATATGGTGCCACACGGCGAGCGGGAACATTCC
GCGGTAACGAAGTCGCAAGAAATGTAATCAACATCAGAACATGCAGCAAT
GATCCACTTCCCTTTTTGTGTACCAAGGAAAATAAGAGCTTCCGCTTTTT
TTGAAACCATAAAAAGGTGTGTTATCGGGAGTCATGCCCTTTCTTcacat
cgccttctcctttttcttacATGCATAGGACTATAGATTTGGTGTTATCT
TCTGACCCTTTCTTCCTAAGGTGACAAGCTAATActtgctcctccatcat
gaAGAATACTCGATCGCTCGCTTTTGGGGCAGTATTGCTGGTTTTAGTGG
cagctgcggaggagggcttcaTGGATAAAGCAGCAGACAAGATCAAACAC
GTCGTAGGGTTAGAGACGGCAGAGGAGGCTCCGAAGTACGAAGCATACGA
AAAAGGTCGAGGTACAGTGAAGCATGGCGAAGACGTCATGGAGCGTGCGA
AAGAGAAAATTGGAAACATCTTTCACCATCATGCGAAGGAGCCAGCAGAT
CTTATCATGCAAGAAGCAAAGTACCAAGCGAATGAGCAAGCAAATGCAGT
GAAGGCTCATGGGCATGGAATATACGATACTGTTAAAGAAACAGTGACCG
CACCCTTCCACTCAGCGAAAGAAAAAAGTCAGGAAATGGCGGAGTCCGCC
CATGAAAGGGCAGAAGCGGGTGTGGGGTGTGCAAATGAGGCGATGAAGGA
AGCGCGCCGACAAGGCATGCAGGGCTATGAAACGACAAAGGGTAAAACAG
AAGAGACAATTCAGAAGGGTCAAAGCAAGATCCGGCAGATGAAGGACAAT
GTTGAAAATATGCTGCagcaggggaaagagaaagtggACGAAAACATTGA
AGCTGTCAAAGGGGTGACTGGGGAAAAAATTGAGCATGCAAAAGAGTATG
CCCACGAAGTAAAacagaaaggagaagaaggtgctgCATTTAAAAATGGC
ATCAAAGATGAGACGATGGGATCTGGTGAAACCCTGGTGGGGACTGCTAC
ACGTAAAATGAAGGAAGTTTTCGGCGGAGAGCACGTAAACCGGAAAGGTC
AGAATGCGATGGATACAGTGGAAGAAAAGTCAAGGGAAGCCATGGACAGA
GCCAAGGTAAGGGATTTGACAGATCTTGAAGCAGTTCTGTTTCTCATTTC
TTGCTTTTAGA
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Coding sequence (CDS) from alignment at CM002458.1:588626..590036+

>rna1966 ID=rna1966|Name=rna1966|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002458.1:588626..590036+ (Nannochloropsis gaditana)
atgaAGAATACTCGATCGCTCGCTTTTGGGGCAGTATTGCTGGTTTTAGT
GGcagctgcggaggagggcttcaTGGATAAAGCAGCAGACAAGATCAAAC
ACGTCGTAGGGTTAGAGACGGCAGAGGAGGCTCCGAAGTACGAAGCATAC
GAAAAAGGTCGAGGTACAGTGAAGCATGGCGAAGACGTCATGGAGCGTGC
GAAAGAGAAAATTGGAAACATCTTTCACCATCATGCGAAGGAGCCAGCAG
ATCTTATCATGCAAGAAGCAAAGTACCAAGCGAATGAGCAAGCAAATGCA
GTGAAGGCTCATGGGCATGGAATATACGATACTGTTAAAGAAACAGTGAC
CGCACCCTTCCACTCAGCGAAAGAAAAAAGTCAGGAAATGGCGGAGTCCG
CCCATGAAAGGGCAGAAGCGGGTGTGGGGTGTGCAAATGAGGCGATGAAG
GAAGCGCGCCGACAAGGCATGCAGGGCTATGAAACGACAAAGGGTAAAAC
AGAAGAGACAATTCAGAAGGGTCAAAGCAAGATCCGGCAGATGAAGGACA
ATGTTGAAAATATGCTGCagcaggggaaagagaaagtggACGAAAACATT
GAAGCTGTCAAAGGGGTGACTGGGGAAAAAATTGAGCATGCAAAAGAGTA
TGCCCACGAAGTAAAacagaaaggagaagaaggtgctgCATTTAAAAATG
GCATCAAAGATGAGACGATGGGATCTGGTGAAACCCTGGTGGGGACTGCT
ACACGTAAAATGAAGGAAGTTTTCGGCGGAGAGCACGTAAACCGGAAAGG
TCAGAATGCGATGGATACAGTGGAAGAAAAGTCAAGGGAAGCCATGGACA
GAGCCAAGGTAAGGGATTTGACAGATCTTGAAGCAGTTCTGTTTCTCATT
TCTTGCTTTTAG
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Synonyms
Publications