EWM28740.1, cds1961 (CDS) Nannochloropsis gaditana

Overview
NameEWM28740.1
Unique Namecds1961
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:589124..590035 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28740.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g53.4859.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:589124..590035 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28740.1 vs. NCBI_GenBank
Match: gi|585111163|gb|EWM28740.1| (hypothetical protein Naga_100002g53 [Nannochloropsis gaditana])

HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKVRDLTDLEAVLFLISCF 303
            MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKVRDLTDLEAVLFLISCF
Sbjct:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKVRDLTDLEAVLFLISCF 303          
BLAST of EWM28740.1 vs. NCBI_GenBank
Match: gi|585111164|gb|EWM28741.1| (hypothetical protein Naga_100002g53 [Nannochloropsis gaditana])

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAK 286
            MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAK
Sbjct:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAK 286          
BLAST of EWM28740.1 vs. NCBI_GenBank
Match: gi|732881975|gb|KHJ90756.1| (late embryogeneis abundant protein [Oesophagostomum dentatum])

HSP 1 Score: 68.1662 bits (165), Expect = 1.136e-9
Identity = 67/238 (28.15%), Postives = 106/238 (44.54%), Query Frame = 0
Query:   11 AVLLVLVAAA----EEGFMDKAADKIKHVV-----------------GLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKI-------GNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHE 220
            +VLL+LVAA+    E+G ++   DK+ +                   G E AE A   E YE+G+   + G D +ER KEK+        N  H  AK+ A    QEAK  A+E+    K      Y+  K+  +  +  AK+ + +      E+        +E  ++ +    Q Y+  K    E + +G  K+R+ +D V    QQGK+   +  E  K    EK++ AK+YA E
Sbjct:    7 SVLLLLVAASVYANEKGILEDIGDKVSNAAESVKNAAISGYEKVTGAGQEAAERAG--EKYEEGK---EAGSDAVERGKEKLQEGKDAAANKLHQ-AKDAASEKYQEAKDAASERYQQGKDKASQTYEHGKDAASEKYQQAKDAASDKLHQGAEKVREARDTMSEKYEQGKNAASQKYQQAKDTASEKLHQGAEKVREARDTVSEKYQQGKQTASDAYERGKDYAKEKLDQAKDYASE 238          
The following BLAST results are available for this feature:
BLAST of EWM28740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111163|gb|EWM28740.1|0.000e+0100.00hypothetical protein Naga_100002g53 [Nannochlorops... [more]
gi|585111164|gb|EWM28741.1|0.000e+0100.00hypothetical protein Naga_100002g53 [Nannochlorops... [more]
gi|732881975|gb|KHJ90756.1|1.136e-928.15late embryogeneis abundant protein [Oesophagostomu... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1966rna1966Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications