rna1965, rna1965 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1965
Unique Name	rna1965
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2855
Alignment location	CM002458.1:588626..591174 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g53.4860.mrna
Orig protein id	gnl\|cribi\|Naga_100002g53.4860
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:588626..591174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g53	gene1877	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1965	rna1965-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28741.1	cds1960	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:588626..591174+
coding sequence from alignment at CM002458.1:588626..591174+

mRNA sequence

>rna1965 ID=rna1965|Name=rna1965|organism=Nannochloropsis gaditana|type=mRNA|length=2855bp
CTCTGGCCTCCATTTCACCACATTGATCCACAAACTCTTGACATTAAACA
GGGTATCTTTATAGACCGCCATCTGAAAGTCCGAGCGGTCTTTTCCAGCT
GCCCAACACCTCTTGCCGTCTATTTACAAGTAGCTATTGCCACATCGGAG
ACGCCCATGTCGACGGCATTCACGACGAGCAACCATAGTGCTTTCAATGA
CATGCCACCACCGCAGCCATCATCGTCCCGCACATCAAAGCAGCTTGATA
AGTATAGCAGTGATGTTCCTGTAACTTCCGCCGGAGTCAGGCTGTCGTTC
GAGTGCGAATACGACGCGGAATTGGCGCCCTCGCGCCCTCGTAACTACAT
AGAGCAACCCCTGAACCAGCTTTCACAGGCCCAGAATCCAGTAGCTAGCA
CCGATGGCGAGAACTCCAACGCCATTGACGAACTTGGGTGGGCAGAGAAT
ATCGATGAAGAGATACGGAGGCGGAGAGAGGAACTGGAGCGAGTACGCGA
TGAGAGTCGAGCATCCGTTTTCTTGCTCGAAGACAAGGCCAAGGGCGGCC
TGAGTCCCGCATTCAGTCCCGCAGTGCATGAGTTTGTCTCTCTCGTCATG
GCGGGCTCAGTGCCGTCTTCTGCTTTCTCCTCAACTTACCCGGTCGCCCA
TAAAGAGGGCATGCTCGAAACTCCTAATGGGGACTACCTGCAGACCCCAT
CCCATTCCATTTTTTCTTCTCGCGCAAAAGGCGCCCTAGGCTTTATCAAA
GATGAAGCTCTTCGATTGAGAGCCGATTTGGAGCAGCAAGCAGGCCTTCT
TGCGAGCGAAAGGCAGCGTAGTGAACAGCTGCAAGAAGAGATGGCGGAGT
TGACGAGGCAGCGAAAGAGTCTGTCGCAGGAGTTGGAGGCTCGTGAACTG
AAAATTGTAAATTATGAAGATTCTTTAGGGGAGCTGCAGACGATGGTGGC
GAATGAGCGCGAAGCGAACCAGCATCGCGAGGAAAATTTACAGGCACACA
TAGAAGAGCTACAGCTTGCTTTGGAACGTCACACGCAGCGGGACCATGAA
TTGCAAGAGTTCCACGACCATACTGGACAGAGACGATTTGCAAGAACAGA
AGAGCAGGAGGTCCTTATATGAGCTTGAAAAGTATACATCGGATTGTAAA
AAGGCCGCTCCTCCTAACAACGCTTTGTTTGAGGAGGCAACGCTGCAGGA
AAAGGCGACGGAGTCCGTCGAAATGGAAAGTCAAACGCTTCGAAGCCAAC
TAGATGAAGAATCACTGAAGGCAGGAACTTTGATTTATGGAACTTCTGTG
ACTTCATCGTCTTCGCGGCGGCATTCATCGGATGTTGGTGCTCTTGTGCA
TGCCTTGGATGCCTCGGAAGCCGCAAAAAAATCTTTGGAAGCACGGATCT
TGCAGGAGCAACAGTCAGCAGAGCAGCTTAGGGCGGAATTGCAGCAATTT
CGATTAAAATGGGATGATGCCTTACGCAATGCGGTACATGAAGAGGAGAC
TACAGCGCGATCTTTGCGGAAACAAATCGAAGAACAGGAAGAGGTTGTCA
AAATCCTCCGTCATAATCTATCCAATGTAGAACGGGCGCGCGACGAAATG
GGAGTGAGGGCGGATGAAGCGGGCAGACAGGGCACGCGCGAGGAGCTCTC
ACAGGAAGAGAAAGAGGAGATACAATCCCTCCGGGATGAGATCGAGGTTT
ATAAAGCGGAATTGGTTTCTTTCCGAAGGGAGCAACTTGAAAAGAAAAGA
ACAACGGCTATGAATGTAGCGGTATCCGAGCACCATTCATCAACGCATGA
AGCTGATATGGAGCTGCCTGAACAGCCCGCGGACTCAACCATACAGAGAC
TGGAGGACGTGAATAGACTTCTATCAGAGCGCGTTAGGACTCTGGAAGAG
GCGCTGAGCCAGGTTGGCGAGATGGAGGTTGAAAAACGGGAGCTGATGCG
CTGCGTGGATGCTCTAAAAGATGCTCTAGAGCAGGAGCGGGAGGGTCATC
AACAGCATTTCGAAAAAACGGTCACTACCCTTAACGAGGAGATAAGTCGA
ATCGCCGCAGAAATGCATCAAATGGAAAAAGCGAAGCAAAGAGTTGAAAA
AGACCAGCAAAACATTTCCATGTTTGTGCTTCGGAGAATGTTGATGAATA
TTCGCACAAAACACATGCTCAAAAACTCGCGGCGAGCATTTTATCGATGG
GTAGCATCCACTAGCAGCATGCAGCTGGAGCAGCTACAGACAATTCGAGA
AAGCGGAAGCCAACGCTTGGAGGGCGCTCAGGGCGAAGAAGTGAGGCAGC
TTGAGGCTGAAAACCGTGCCTTACTTGAAGAGTTAAAGACGAAACCAGCA
ATCCTTGATGAAAGGGTGTTTTCGATTCAAGATGGGAAAGACCGGGAAAA
GCGCTGGCGTTCGGAAGGAATTAGCTCCTTCGCTTTCAAAATCATTTTTG
CAGTCCTTCTCTTTCTAGCCCTGGAGCGGGGCTTTGTATTGCATGACGGA
GGGTATGATTTGTACTACTTAGATTCCCCACGCGTTACCATGTGAAATGC
CAGAAGTGAAAAATAGTCTGCAAATGATATTCTTTTGGCAAGAGTGCGGG
TATTTTTTCATTTCTTTTGGCATGTCTTTTCATGATATATTCAGGCATTA
AATTCCTTCTCTAGAAGACAAGACTTACTTCACCGTCCACCCCATTCACG
CTTCTGGAAGAGATGCTGAATGTTGTTGTCCCAATTTTCTTCCCCGTGCC
CTTCATGATTTGAACATAAGACGATCTTTCGCTCAGTCTTCAACAGATAA
GTCATCCCTGCAAAACACGTGCAACACGATATACTGGCATTTACCATGTC
GACGC

protein sequence of rna1965

>rna1965-protein ID=rna1965-protein|Name=rna1965|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAY
EKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANA
VKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMK
EARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENI
EAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTA
TRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVEEL

mRNA from alignment at CM002458.1:588626..591174+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1965 ID=rna1965|Name=rna1965|organism=Nannochloropsis gaditana|type=mRNA|length=2549bp|location=Sequence derived from alignment at CM002458.1:588626..591174+ (Nannochloropsis gaditana)
TGCATTTCGGCGTTTACGTCACTAAAGTTGTTGTTCTGCTGAGTATGTTC
AAATTATGTGATGCACCGATAGAAATCAATGCCAACAGGCTGATTTTCCC
GGCCATGCTCCTACCTTCTGCTGGTGCTTCGACGTAGCTGGGTCTTACAA
CCATCCTCAAGTTCCCCACTATTTCTAGTAGTACGTATTGATTTCCGTGA
GGCGCATTCTTACGCATTATATGGTGCCACACGGCGAGCGGGAACATTCC
GCGGTAACGAAGTCGCAAGAAATGTAATCAACATCAGAACATGCAGCAAT
GATCCACTTCCCTTTTTGTGTACCAAGGAAAATAAGAGCTTCCGCTTTTT
TTGAAACCATAAAAAGGTGTGTTATCGGGAGTCATGCCCTTTCTTcacat
cgccttctcctttttcttacATGCATAGGACTATAGATTTGGTGTTATCT
TCTGACCCTTTCTTCCTAAGGTGACAAGCTAATActtgctcctccatcat
gaAGAATACTCGATCGCTCGCTTTTGGGGCAGTATTGCTGGTTTTAGTGG
cagctgcggaggagggcttcaTGGATAAAGCAGCAGACAAGATCAAACAC
GTCGTAGGGTTAGAGACGGCAGAGGAGGCTCCGAAGTACGAAGCATACGA
AAAAGGTCGAGGTACAGTGAAGCATGGCGAAGACGTCATGGAGCGTGCGA
AAGAGAAAATTGGAAACATCTTTCACCATCATGCGAAGGAGCCAGCAGAT
CTTATCATGCAAGAAGCAAAGTACCAAGCGAATGAGCAAGCAAATGCAGT
GAAGGCTCATGGGCATGGAATATACGATACTGTTAAAGAAACAGTGACCG
CACCCTTCCACTCAGCGAAAGAAAAAAGTCAGGAAATGGCGGAGTCCGCC
CATGAAAGGGCAGAAGCGGGTGTGGGGTGTGCAAATGAGGCGATGAAGGA
AGCGCGCCGACAAGGCATGCAGGGCTATGAAACGACAAAGGGTAAAACAG
AAGAGACAATTCAGAAGGGTCAAAGCAAGATCCGGCAGATGAAGGACAAT
GTTGAAAATATGCTGCagcaggggaaagagaaagtggACGAAAACATTGA
AGCTGTCAAAGGGGTGACTGGGGAAAAAATTGAGCATGCAAAAGAGTATG
CCCACGAAGTAAAacagaaaggagaagaaggtgctgCATTTAAAAATGGC
ATCAAAGATGAGACGATGGGATCTGGTGAAACCCTGGTGGGGACTGCTAC
ACGTAAAATGAAGGAAGTTTTCGGCGGAGAGCACGTAAACCGGAAAGGTC
AGAATGCGATGGATACAGTGGAAGAAAAGTCAAGGGAAGCCATGGACAGA
GCCAAGGTAAGGGATTTGACAGATCTTGAAGCAGTTCTGTTTCTCATTTC
TTGCTTTTAGATGACATCGTTGTGGGATGTtttaatttttttttctATTT
TCAAATGGAAAGAAGCGGTATGCTCTCGACATATAAATATGATACACACA
ACAGGAAGGAGTTGAGGAGCTCTGAACGAAATTTCAGTCTACATCATAAT
CCAGTATCATTGCGGCAATCTTGGACCAGTTGAGCTGAAAGACCGCGGAA
ATGGCATCGATGGAAGAGAAATATGATAAGACAAACAAAGACTATGCGGT
GAAATGCTTGACATTGTAAAAAAGCTCCAAAGACGCCTTCCATCGAATTG
CTTGGCAAAGTCGTCAATCTTTTTGAATCCGTTTTACGATCATCCCTAAT
TTTATGCATGGAGCTCTCTGCACACTACATAACAGGCAACAGAAGAAAAA
CACAATAGAGCTGCGTGCATTAGCCTCCGAAAAGAAGCTGGGATTCTTCC
AGATACCGCCATACCACAGCAAACAACATTCCTTGAAGAGCGTTTGCAGC
CAACctgaatgagggagggggagaaatgcCCTTTAAGCCACCTGTACTTC
CGCAGCCCTTCTGATGTTAAGTGTACCCCAAAAGCCCGCCGACATCAAGT
CCCAACCCGCGAAAAACCTTGTTTGCAAGCCTCGAGCAAATAAACCCTGA
ATGCCATCCTCATCCAGTATGTGACGTAGAGCTTGCCGGTATGTAATTGA
TGATTCTGACGTCTGTTTGGTAGTTTTGATAACGCGGAAGCAATTCGAGC
ACACGTCCGATGTTGTGGAAGAGCATAAACCTAGACACACACAGTGCATG
AATCAAATGTAAGCACAAATTGAATTTGCTCCAATCGACGGCTTGTAGTA
TTAACCCGAAAGCTTTTTCTTTGGCACACCACAAAATTACCTAAGAAGGC
ATTTCTACCCAGACGCGGAAAAATTTCACCTGAAGGTGGTACGGGGATAA
TCGACGATAAATAATTGAAGGTTAGAAAGTAAGGCCAGTGTCCCGCAGCC
GTGGCAACTGCTTGAATAACAGCTCCTTGATAAAGTGAAGGaattccctc
tcttcttagCCGCGCTGCGAGCTGCGGCAAAGCTTTTGAGCCTTGGACCT
GTGTATGCGTTAGTGAGTGAGCTCTTTGAAGAGATTTTACACCGCTATT

Coding sequence (CDS) from alignment at CM002458.1:588626..591174+

>rna1965 ID=rna1965|Name=rna1965|organism=Nannochloropsis gaditana|type=CDS|length=1758bp|location=Sequence derived from alignment at CM002458.1:588626..591174+ (Nannochloropsis gaditana)
atgaAGAATACTCGATCGCTCGCTTTTGGGGCAGTATTGCTGGTTTTAGT
GGcagctgcggaggagggcttcaTGGATAAAGCAGCAGACAAGATCAAAC
ACGTCGTAGGGTTAGAGACGGCAGAGGAGGCTCCGAAGTACGAAGCATAC
GAAAAAGGTCGAGGTACAGTGAAGCATGGCGAAGACGTCATGGAGCGTGC
GAAAGAGAAAATTGGAAACATCTTTCACCATCATGCGAAGGAGCCAGCAG
ATCTTATCATGCAAGAAGCAAAGTACCAAGCGAATGAGCAAGCAAATGCA
GTGAAGGCTCATGGGCATGGAATATACGATACTGTTAAAGAAACAGTGAC
CGCACCCTTCCACTCAGCGAAAGAAAAAAGTCAGGAAATGGCGGAGTCCG
CCCATGAAAGGGCAGAAGCGGGTGTGGGGTGTGCAAATGAGGCGATGAAG
GAAGCGCGCCGACAAGGCATGCAGGGCTATGAAACGACAAAGGGTAAAAC
AGAAGAGACAATTCAGAAGGGTCAAAGCAAGATCCGGCAGATGAAGGACA
ATGTTGAAAATATGCTGCagcaggggaaagagaaagtggACGAAAACATT
GAAGCTGTCAAAGGGGTGACTGGGGAAAAAATTGAGCATGCAAAAGAGTA
TGCCCACGAAGTAAAacagaaaggagaagaaggtgctgCATTTAAAAATG
GCATCAAAGATGAGACGATGGGATCTGGTGAAACCCTGGTGGGGACTGCT
ACACGTAAAATGAAGGAAGTTTTCGGCGGAGAGCACGTAAACCGGAAAGG
TCAGAATGCGATGGATACAGTGGAAGAAAAGTCAAGGGAAGCCATGGACA
GAGCCAAGGAAGGAGTTGAGGAGCTCTGAatgaAGAATACTCGATCGCTC
GCTTTTGGGGCAGTATTGCTGGTTTTAGTGGcagctgcggaggagggctt
caTGGATAAAGCAGCAGACAAGATCAAACACGTCGTAGGGTTAGAGACGG
CAGAGGAGGCTCCGAAGTACGAAGCATACGAAAAAGGTCGAGGTACAGTG
AAGCATGGCGAAGACGTCATGGAGCGTGCGAAAGAGAAAATTGGAAACAT
CTTTCACCATCATGCGAAGGAGCCAGCAGATCTTATCATGCAAGAAGCAA
AGTACCAAGCGAATGAGCAAGCAAATGCAGTGAAGGCTCATGGGCATGGA
ATATACGATACTGTTAAAGAAACAGTGACCGCACCCTTCCACTCAGCGAA
AGAAAAAAGTCAGGAAATGGCGGAGTCCGCCCATGAAAGGGCAGAAGCGG
GTGTGGGGTGTGCAAATGAGGCGATGAAGGAAGCGCGCCGACAAGGCATG
CAGGGCTATGAAACGACAAAGGGTAAAACAGAAGAGACAATTCAGAAGGG
TCAAAGCAAGATCCGGCAGATGAAGGACAATGTTGAAAATATGCTGCagc
aggggaaagagaaagtggACGAAAACATTGAAGCTGTCAAAGGGGTGACT
GGGGAAAAAATTGAGCATGCAAAAGAGTATGCCCACGAAGTAAAacagaa
aggagaagaaggtgctgCATTTAAAAATGGCATCAAAGATGAGACGATGG
GATCTGGTGAAACCCTGGTGGGGACTGCTACACGTAAAATGAAGGAAGTT
TTCGGCGGAGAGCACGTAAACCGGAAAGGTCAGAATGCGATGGATACAGT
GGAAGAAAAGTCAAGGGAAGCCATGGACAGAGCCAAGGAAGGAGTTGAGG
AGCTCTGA

Synonyms

Publications