EWM28741.1, cds1960 (CDS) Nannochloropsis gaditana

Overview
NameEWM28741.1
Unique Namecds1960
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:589124..589981 +
Alignment locationCM002458.1:590130..590150 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28741.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g53.4860.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:589124..589981 +
CM002458.1supercontigCM002458.1:590130..590150 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|585111164|gb|EWM28741.1| (hypothetical protein Naga_100002g53 [Nannochloropsis gaditana])

HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVEEL 292
            MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVEEL
Sbjct:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVEEL 292          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|585111163|gb|EWM28740.1| (hypothetical protein Naga_100002g53 [Nannochloropsis gaditana])

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAK 286
            MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAK
Sbjct:    1 MKNTRSLAFGAVLLVLVAAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAK 286          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|732881975|gb|KHJ90756.1| (late embryogeneis abundant protein [Oesophagostomum dentatum])

HSP 1 Score: 67.3958 bits (163), Expect = 1.602e-9
Identity = 67/238 (28.15%), Postives = 106/238 (44.54%), Query Frame = 0
Query:   11 AVLLVLVAAA----EEGFMDKAADKIKHVV-----------------GLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKI-------GNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHE 220
            +VLL+LVAA+    E+G ++   DK+ +                   G E AE A   E YE+G+   + G D +ER KEK+        N  H  AK+ A    QEAK  A+E+    K      Y+  K+  +  +  AK+ + +      E+        +E  ++ +    Q Y+  K    E + +G  K+R+ +D V    QQGK+   +  E  K    EK++ AK+YA E
Sbjct:    7 SVLLLLVAASVYANEKGILEDIGDKVSNAAESVKNAAISGYEKVTGAGQEAAERAG--EKYEEGK---EAGSDAVERGKEKLQEGKDAAANKLHQ-AKDAASEKYQEAKDAASERYQQGKDKASQTYEHGKDAASEKYQQAKDAASDKLHQGAEKVREARDTMSEKYEQGKNAASQKYQQAKDTASEKLHQGAEKVREARDTVSEKYQQGKQTASDAYERGKDYAKEKLDQAKDYASE 238          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|392920160|ref|NP_001256174.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|22265914|emb|CAB05548.2| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 62.3882 bits (150), Expect = 2.360e-7
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   62 DVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQG------MQGY-ETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQK-GEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVE 290
            DV + AK+K  ++F    KE  +     AK  AN+  +A+K      YD+ KE  +  F SAKE  ++  ESA E  E     A++A+  A++ G       QGY E  K K+ E     +    +  D+ ++  +Q K+K  + +E+ K    E  + AKE+A   K K  +   A K+   D    +GET               E+++     A+D   E +  A D A E  E
Sbjct:  120 DVWDSAKDKTSDVFDS-LKEHGEDASDSAKDLANDAEDAIK----DTYDSAKEKASDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSEIWDSAKKHGEEASDSAKDYFEQAKDKASDAVESAKKQGEETSDAAKEHADHAKGKIADAWDATKDKADDVKDTAGETF--------------ENIHHSATTAVDEARENAAAAKDNASESAE 337          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|392920158|ref|NP_001256173.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|58081864|emb|CAI46598.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 62.003 bits (149), Expect = 3.205e-7
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   62 DVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQG------MQGY-ETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQK-GEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVE 290
            DV + AK+K  ++F    KE  +     AK  AN+  +A+K      YD+ KE  +  F SAKE  ++  ESA E  E     A++A+  A++ G       QGY E  K K+ E     +    +  D+ ++  +Q K+K  + +E+ K    E  + AKE+A   K K  +   A K+   D    +GET               E+++     A+D   E +  A D A E  E
Sbjct:  120 DVWDSAKDKTSDVFDS-LKEHGEDASDSAKDLANDAEDAIK----DTYDSAKEKASDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSEIWDSAKKHGEEASDSAKDYFEQAKDKASDAVESAKKQGEETSDAAKEHADHAKGKIADAWDATKDKADDVKDTAGETF--------------ENIHHSATTAVDEARENAAAAKDNASESAE 337          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|453232460|ref|NP_001263854.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|393793304|emb|CCH63939.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 61.6178 bits (148), Expect = 5.079e-7
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   62 DVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQG------MQGY-ETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQK-GEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVE 290
            DV + AK+K  ++F    KE  +     AK  AN+  +A+K      YD+ KE  +  F SAKE  ++  ESA E  E     A++A+  A++ G       QGY E  K K+ E     +    +  D+ ++  +Q K+K  + +E+ K    E  + AKE+A   K K  +   A K+   D    +GET               E+++     A+D   E +  A D A E  E
Sbjct:  364 DVWDSAKDKTSDVFDS-LKEHGEDASDSAKDLANDAEDAIK----DTYDSAKEKASDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSEIWDSAKKHGEEASDSAKDYFEQAKDKASDAVESAKKQGEETSDAAKEHADHAKGKIADAWDATKDKADDVKDTAGETF--------------ENIHHSATTAVDEARENAAAAKDNASESAE 581          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|392920146|ref|NP_001256167.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571156|emb|CCF23421.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 61.6178 bits (148), Expect = 5.134e-7
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   62 DVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQG------MQGY-ETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQK-GEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVE 290
            DV + AK+K  ++F    KE  +     AK  AN+  +A+K      YD+ KE  +  F SAKE  ++  ESA E  E     A++A+  A++ G       QGY E  K K+ E     +    +  D+ ++  +Q K+K  + +E+ K    E  + AKE+A   K K  +   A K+   D    +GET               E+++     A+D   E +  A D A E  E
Sbjct:  789 DVWDSAKDKTSDVFDS-LKEHGEDASDSAKDLANDAEDAIK----DTYDSAKEKASDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSEIWDSAKKHGEEASDSAKDYFEQAKDKASDAVESAKKQGEETSDAAKEHADHAKGKIADAWDATKDKADDVKDTAGETF--------------ENIHHSATTAVDEARENAAAAKDNASESAE 1006          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|392920138|ref|NP_001256163.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571158|emb|CCF23423.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 61.6178 bits (148), Expect = 5.627e-7
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   62 DVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQG------MQGY-ETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQK-GEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVE 290
            DV + AK+K  ++F    KE  +     AK  AN+  +A+K      YD+ KE  +  F SAKE  ++  ESA E  E     A++A+  A++ G       QGY E  K K+ E     +    +  D+ ++  +Q K+K  + +E+ K    E  + AKE+A   K K  +   A K+   D    +GET               E+++     A+D   E +  A D A E  E
Sbjct:  945 DVWDSAKDKTSDVFDS-LKEHGEDASDSAKDLANDAEDAIK----DTYDSAKEKASDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSEIWDSAKKHGEEASDSAKDYFEQAKDKASDAVESAKKQGEETSDAAKEHADHAKGKIADAWDATKDKADDVKDTAGETF--------------ENIHHSATTAVDEARENAAAAKDNASESAE 1162          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|392920132|ref|NP_001256160.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571161|emb|CCF23426.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 61.6178 bits (148), Expect = 5.793e-7
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   62 DVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQG------MQGY-ETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQK-GEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVE 290
            DV + AK+K  ++F    KE  +     AK  AN+  +A+K      YD+ KE  +  F SAKE  ++  ESA E  E     A++A+  A++ G       QGY E  K K+ E     +    +  D+ ++  +Q K+K  + +E+ K    E  + AKE+A   K K  +   A K+   D    +GET               E+++     A+D   E +  A D A E  E
Sbjct:  961 DVWDSAKDKTSDVFDS-LKEHGEDASDSAKDLANDAEDAIK----DTYDSAKEKASDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSEIWDSAKKHGEEASDSAKDYFEQAKDKASDAVESAKKQGEETSDAAKEHADHAKGKIADAWDATKDKADDVKDTAGETF--------------ENIHHSATTAVDEARENAAAAKDNASESAE 1178          
BLAST of EWM28741.1 vs. NCBI_GenBank
Match: gi|392920140|ref|NP_001256164.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571159|emb|CCF23424.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 61.6178 bits (148), Expect = 5.807e-7
Identity = 67/237 (28.27%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   62 DVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQG------MQGY-ETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQK-GEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVE 290
            DV + AK+K  ++F    KE  +     AK  AN+  +A+K      YD+ KE  +  F SAKE  ++  ESA E  E     A++A+  A++ G       QGY E  K K+ E     +    +  D+ ++  +Q K+K  + +E+ K    E  + AKE+A   K K  +   A K+   D    +GET               E+++     A+D   E +  A D A E  E
Sbjct:  821 DVWDSAKDKTSDVFDS-LKEHGEDASDSAKDLANDAEDAIK----DTYDSAKEKASDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSEIWDSAKKHGEEASDSAKDYFEQAKDKASDAVESAKKQGEETSDAAKEHADHAKGKIADAWDATKDKADDVKDTAGETF--------------ENIHHSATTAVDEARENAAAAKDNASESAE 1038          
The following BLAST results are available for this feature:
BLAST of EWM28741.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111164|gb|EWM28741.1|0.000e+0100.00hypothetical protein Naga_100002g53 [Nannochlorops... [more]
gi|585111163|gb|EWM28740.1|0.000e+0100.00hypothetical protein Naga_100002g53 [Nannochlorops... [more]
gi|732881975|gb|KHJ90756.1|1.602e-928.15late embryogeneis abundant protein [Oesophagostomu... [more]
gi|392920160|ref|NP_001256174.1|2.360e-728.27plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920158|ref|NP_001256173.1|3.205e-728.27plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|453232460|ref|NP_001263854.1|5.079e-728.27plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920146|ref|NP_001256167.1|5.134e-728.27plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920138|ref|NP_001256163.1|5.627e-728.27plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920132|ref|NP_001256160.1|5.793e-728.27plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920140|ref|NP_001256164.1|5.807e-728.27plant Late Embryo Abundant (LEA) related [Caenorha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1965rna1965Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications