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Properties
| Property Name | Value |
|---|
| Product | Pentatricopeptide repeat containing protein |
| Orig transcript id | gnl|cribi|Naga_100002g119.4856.mrna |
| Orig protein id | gnl|cribi|Naga_100002g119.4856 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:429799..433003 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1902 ID=rna1902|Name=rna1902|organism=Nannochloropsis gaditana|type=mRNA|length=1202bp
TTTGGACGGTAGCTTGTAGCCGATGGATGTCGCCCGATAATTGGAGGTCA
TCTCTCGCACAGCTCATGCAGCCCCTCACACATACAGCACACCATGTCCA
GTGCGACCCCTGCTTACCGCAGTAGAGCTTTGGAAGAGGAAATGGACAAG
TTCAGGTCCATGATTCAAAACTTCGCCTCTCCCGTGCCCACCGACTACAT
TCACACCCTCCCCCCCGACTTTGTGCAGTACGCCGCCTCGGTTCGGGCCG
CATCCGGCAGTGATGCCGGAAAGAGCAGGCCGCGCCTATCATTGGTGGAT
GTTGCACGCAGCATGGCGACCACACAGGCCTTTGGGCGGCCGATGGAGGG
CTTCTCCGAAGACCAAGTGCGGAGAGCCTTCAGTTTGGGGGACTGGGAGG
GCGGCTCGTCTAGCCCCTCCCTTCGGAACACGGCCAAGGTGCCAGAGCCC
ATCTACCGCGAAATACGTCCAATACATATCCGAGACGGTAGCGTCCTGTC
TACCGACCAAGGGAAAGGGACGGAAGAAAAAGCTGCCGGCAAGAAGACAG
TGGAGGCGGCTCCTGCAGTCCCTAAACTTATGGCAGTCCAAGGGTCCGTC
CCTCCCACAGCGAAACGGCCCAAACTAAAAGCAGGCTTTCTAAAGCCAGC
CGACTCTTCAACAGCCCTACCTGAAGCCCCGTCCTCAGCTGAATCCGCGC
CTGTCCTAGCCCCTCCGGCGTCGCAACCGCCTGCCCCGGCACCGTCCCCA
CTAGTCCTGCCACCTGTCCCTAAGGTGGATGTATCCAAGCTGACGGGCCA
GCGCCGTGTCTCGGACCTGACGCAGCCGGAAGTCTTGACGATCGCCGAGG
AGGTCACGAAGAAGCTGCGGGCCAAGCGGGGGAAGGGCATGTGGCGGAGA
CAGAACCCCTTGGACACGGAAATCACCAGGGAGAACTGTGCCGCCCTGGG
GATTCCCGGGTACTTCGACGTCGTCGAGCGCTCCATGAGCCTGCAGGTCA
TCAATCGCAAGATCCGCGACTCGGAGTACAGGGCCCTGCGAGACTTCGTG
GATGACGTGGAGCTGATGGTGCAGAACGCCAAGACCTTCAACGCGCCCGC
CCACCCCGTGCATGCCTTTGCGGAGGAGACGCGGCTGCTGTTCGCGCGGT
TGCTGGAGGGGCACAAGAAGGACTACGCCCTCCGGGAGGAGTGAGGCGGG
GG back to topprotein sequence of rna1902 >rna1902-protein ID=rna1902-protein|Name=rna1902|organism=Nannochloropsis gaditana|type=polypeptide|length=921bp
MIVRRCGRQRHMPIRALLHPNGATRVATFLSIVCVFASLSVQYALRLHPS
TPMTCRKSSSISVVSLSDRRKCGDICKHYAVSSLTAGSGSEDDSPTMRRR
PPPPWPRPSPSATSAYTVAEVKALGERIRKGIDLNNAFKDLRNWRMADEG
RTPVPDAMYRAILEHCRHPRPPRAYASKMLGLAGNVVQSYFLDVVASSSA
PSALPVKEFREVLQAMSRARDAEGAVALLRLLTLQCQENGGKAGPASSYL
DEYLFFLVVKCCCADAEEGSKRARSTPALAAVAPLMAEMDRLRIPKSSFL
YSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGD
LDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSR
VGGSTGLPLPDQYSYNTVLRALGEEDLGAAIALYREMRDAGVQPDRVTVN
TLVAACAAHGRLDRGLLILESSAVPASVEGYTALISALAGKGELEKARDV
LESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLR
PTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLA
ALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPP
PRSPVDLLQRLPNALLQPKGDQGEDGLERAAAAVDAAVADAGDDPASCPP
RGILPGPDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQ
AFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAG
SKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLG
DLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGRGGWEDSRGGRDRRPKA
SDRLFDKYGWNKFDSGYNFFA back to topmRNA from alignment at CM002458.1:429799..433003- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1902 ID=rna1902|Name=rna1902|organism=Nannochloropsis gaditana|type=mRNA|length=3205bp|location=Sequence derived from alignment at CM002458.1:429799..433003- (Nannochloropsis gaditana)
CACACAACAGGCTAGCGCGCTTCTCTACGCTCATCTTGTCCTCATTTTGG
TCCAAGCAAACCAAGTTCACGCAGACACGAAATCGCTTCCTCCACGCACG
CGATGAGCCCCACTTTCAGGACTGTCTAAATGATCGTAAGAAGATGCGGT
CGGCAACGACACATGCCGATTAGGGCACTACTCCATCCAAATGGTGCCAC
CAGGGTTGCCACTTTCCTTAGTATTGTATGCGTCTTTGCCTCGCTCTCTG
TACAGTATGCCCTCCGCCTCCATCCCAGTACTCCAATGACTTGTCGCAAA
AGCAGCTCGATATCTGTTGTCTCTCTGAGCGATAGAAGAAAGTGCGGCGA
TATTTGCAAGCATTACGCTGTCTCAAGCCTAACTGCAGGTAGCGGTAGCG
AAGATGACTCTCCTACGATGCGCAGGCGGCCTCCACCTCCGTGGCCTCGC
CCAAGCCCTTCTGCGACCTCTGCTTACACCGTGGCTGAGGTGAAGGCCTT
GGGAGAGCGGATACGGAAAGGGATTGATCTGAACAATGCTTTCAAAGATC
TCCGGAACTGGCGCATGGCTGATGAAGGGCGTACTCCGGTGCCCGACGCG
ATGTACCGCGCCATCCTAGAGCACTGTCGACATCCCCGCCCTCCACGAGC
CTATGCTTCCAAAATGCTTGGCTTGGCGGGGAACGTGGTGCAATCATACT
TTCTGGATGTGGTGGCGTCGTCATCCGCACCCTCAGCCTTGCCTGTGAAA
GAGTTTCGCGAAGTCTTGCAAGCCATGTCGCGCGCTCGAGACGCCGAGGG
GGCTGTGGCCCTCCTTCGCCTCCTCACACTCCAGTGCCAGGAGAACGGGG
GAAAAGCGGGTCCCGCATCATCGTATCTGGATGAGTACCTCTTTTTCCTG
GTAGTGAAGTGCTGTTGCGCGGACGCAGAGGAGGGGTCGAAGAGAGCGAG
AAGCACGCCGGCATTGGCCGCCGTGGCGCCCTTGATGGCTGAGATGGACC
GTCTGCGCATTCCCAAGTCCAGCTTTTTGTACAGCGCTGCCTTGAAAGGC
TTCGGGCGCATGCAGTGGAGGGAGCGCGTGGAGGCGCTGGCGGAGGAGAT
GATGGACCGGCGGGAGGAGGTGGCTCTTGATACAGTCGCGCTCAACTCCC
TCTTGGATGCTCTGACCCGCGTGGGCGACTTAGACCGAGCCCGGGGCATC
CTACGGGATATGGCCCAAGCCTCATATGTTTCCACGTCCTACTTAAGGCG
GGGGGTTGCTGAGTATCGTCCAGTCAGACGCGGCGAAAGCGGTAGCCCCT
CAAGAAGCACAGCCCCCCCCCCTTCCCGGGTCGGGGGCTCGACAGGCTTG
CCTCTGCCCGACCAGTACAGCTACAACACCGTGCTCCGAGCCTTGGGGGA
AGAGGACTTGGGCGCCGCCATCGCCCTGTATCGAGAGATGCGGGACGCGG
GAGTGCAGCCCGACAGGGTCACCGTGAACACGCTGGTCGCCGCCTGCGCC
GCCCACGGGCGCCTGGACCGGGGGCTCCTAATCTTGGAGAGCAGCGCTGT
GCCAGCCTCGGTGGAGGGGTACACGGCCTTGATCTCGGCTCTGGCGGGAA
AAGGAGAGCTGGAAAAGGCCCGGGACGTGCTGGAATCGATGCGGGCGGCG
GGCGTGGCCCCGAATGCTCGGACCTATACGGCTTTGCTGCAAGGCGCGGC
GCGGGCCGGAGACATGGCGGGCGTGTGGGCGGCAGTGGGGCGGATGCAGG
AGGAGGGGAAACGAGACCCGCGCCTGAGGCCGACGGTCTGGACGTACAAC
GCGGTGATGGCAGCCTTGGCGAGGGCAGGCCGGGTGGAGGGCATGCTGGC
CTTGCGGGAGGAGATGGCGGGGAAGAGGGGGAAGGCCGGGGTGGCCCCAG
ACATCGTCACCTGCAACACGCTCCTGGCCGCCCTCCTTCTCGCCACGGAC
CCCCCCCGCCTCCGACAGGCAGAGGACTTGTTCATGGAGATGCTGGAAGG
CGGCCCCTTCCCTGACTGCTACACCTTCTCCATGCTCCTCCGCGCTTACT
CCCCCTCCCTTCCATCCCGACCCCCGCCTCCTCGCTCCCCGGTGGACCTC
CTACAGCGCCTCCCGAATGCCCTACTCCAACCTAAGGGGGATCAGGGGGA
GGATGGGCTGGAACGCGCAGCAGCTGCCGTGGACGCCGCCGTGGCCGATG
CCGGCGACGACCCTGCTTCCTGCCCCCCTCGCGGAATTTTGCCGGGGCCC
GACCGACTGCTGGAGCTGATGGCTTCGCGCCATGATTTGGGGGTGCTGTT
GGACACGACGGCCGTAAACAGCCTCCTCCTGGCCCTGGTCAAGGCGGGAG
CGCTGAAGCGGGCCCTGGAGGTCTTCCAAGCCTTCAAGCGCGGGAGCCTG
TCGGCGCTGGTGCCCATCCCCCCGGAAAGGTTCGCCTCTCCCGAAGAAGG
TCGGCCAGGCATTCCGGACGTTATCACCTACACCATCCTGGTGAAGGGGG
TGGCGGGCTCGGATAACGTGTACGCTGGGTCCAAAATTATGCAGCTCTAC
CGAGAGATGCGTGGGGAGTTCCAGATCCTCCCCGACCTGCAGCTCGCCTA
CGCTTTGGTAAATTCCTTCGCATTGGCTCGCTCCCGTGTAGGGGGTTTGG
GTGTGGAGGATCTGGACGAGGTCCTGGGAGACCTGCGGGAACTCGGTTGG
AAGGGCGAAGTTCTGTCTCGGCTGGAAAAGCGTGTCTCGAGCTACAGGGG
TCTGTATTCCGAGGCTTGGAAGGAGGGCCGAGGAGGCTGGGAGGATTCCA
GGGGCGGCCGAGATAGAAGGCCCAAGGCGTCGGACCGACTCTTCGATAAG
TACGGGTGGAATAAGTTCGACAGCGGTTACAATTTCTTCGCGTGAAACTT
AGGGAACGCGAATTGGTTAGTATGGATGAGAGGGGCACATTCGCGGTCTT
ACGATTTCTGTGATCAGAATGAATACCACGTGTGCAAAAAAGGGAGAAGA
CCGGTGAATGATTTAGTCTTGTGAACACTTTAGATGCGGGAAGAAGCGGC
AACTTGTGTATTATGAAACAATTGGCGGCCGATTAGGTAACATAGCTTAC
GCGGCAGCACCAGTTCTTGCAGTGGCACTAGAAGCACTGCATTCGCTATA
ACAGCAACTGTCATCTAGATAAATTAAAGGAAGATATGCAGATAGGGTCC
AGATG back to topCoding sequence (CDS) from alignment at CM002458.1:429799..433003- >rna1902 ID=rna1902|Name=rna1902|organism=Nannochloropsis gaditana|type=CDS|length=2766bp|location=Sequence derived from alignment at CM002458.1:429799..433003- (Nannochloropsis gaditana)
ATGATCGTAAGAAGATGCGGTCGGCAACGACACATGCCGATTAGGGCACT
ACTCCATCCAAATGGTGCCACCAGGGTTGCCACTTTCCTTAGTATTGTAT
GCGTCTTTGCCTCGCTCTCTGTACAGTATGCCCTCCGCCTCCATCCCAGT
ACTCCAATGACTTGTCGCAAAAGCAGCTCGATATCTGTTGTCTCTCTGAG
CGATAGAAGAAAGTGCGGCGATATTTGCAAGCATTACGCTGTCTCAAGCC
TAACTGCAGGTAGCGGTAGCGAAGATGACTCTCCTACGATGCGCAGGCGG
CCTCCACCTCCGTGGCCTCGCCCAAGCCCTTCTGCGACCTCTGCTTACAC
CGTGGCTGAGGTGAAGGCCTTGGGAGAGCGGATACGGAAAGGGATTGATC
TGAACAATGCTTTCAAAGATCTCCGGAACTGGCGCATGGCTGATGAAGGG
CGTACTCCGGTGCCCGACGCGATGTACCGCGCCATCCTAGAGCACTGTCG
ACATCCCCGCCCTCCACGAGCCTATGCTTCCAAAATGCTTGGCTTGGCGG
GGAACGTGGTGCAATCATACTTTCTGGATGTGGTGGCGTCGTCATCCGCA
CCCTCAGCCTTGCCTGTGAAAGAGTTTCGCGAAGTCTTGCAAGCCATGTC
GCGCGCTCGAGACGCCGAGGGGGCTGTGGCCCTCCTTCGCCTCCTCACAC
TCCAGTGCCAGGAGAACGGGGGAAAAGCGGGTCCCGCATCATCGTATCTG
GATGAGTACCTCTTTTTCCTGGTAGTGAAGTGCTGTTGCGCGGACGCAGA
GGAGGGGTCGAAGAGAGCGAGAAGCACGCCGGCATTGGCCGCCGTGGCGC
CCTTGATGGCTGAGATGGACCGTCTGCGCATTCCCAAGTCCAGCTTTTTG
TACAGCGCTGCCTTGAAAGGCTTCGGGCGCATGCAGTGGAGGGAGCGCGT
GGAGGCGCTGGCGGAGGAGATGATGGACCGGCGGGAGGAGGTGGCTCTTG
ATACAGTCGCGCTCAACTCCCTCTTGGATGCTCTGACCCGCGTGGGCGAC
TTAGACCGAGCCCGGGGCATCCTACGGGATATGGCCCAAGCCTCATATGT
TTCCACGTCCTACTTAAGGCGGGGGGTTGCTGAGTATCGTCCAGTCAGAC
GCGGCGAAAGCGGTAGCCCCTCAAGAAGCACAGCCCCCCCCCCTTCCCGG
GTCGGGGGCTCGACAGGCTTGCCTCTGCCCGACCAGTACAGCTACAACAC
CGTGCTCCGAGCCTTGGGGGAAGAGGACTTGGGCGCCGCCATCGCCCTGT
ATCGAGAGATGCGGGACGCGGGAGTGCAGCCCGACAGGGTCACCGTGAAC
ACGCTGGTCGCCGCCTGCGCCGCCCACGGGCGCCTGGACCGGGGGCTCCT
AATCTTGGAGAGCAGCGCTGTGCCAGCCTCGGTGGAGGGGTACACGGCCT
TGATCTCGGCTCTGGCGGGAAAAGGAGAGCTGGAAAAGGCCCGGGACGTG
CTGGAATCGATGCGGGCGGCGGGCGTGGCCCCGAATGCTCGGACCTATAC
GGCTTTGCTGCAAGGCGCGGCGCGGGCCGGAGACATGGCGGGCGTGTGGG
CGGCAGTGGGGCGGATGCAGGAGGAGGGGAAACGAGACCCGCGCCTGAGG
CCGACGGTCTGGACGTACAACGCGGTGATGGCAGCCTTGGCGAGGGCAGG
CCGGGTGGAGGGCATGCTGGCCTTGCGGGAGGAGATGGCGGGGAAGAGGG
GGAAGGCCGGGGTGGCCCCAGACATCGTCACCTGCAACACGCTCCTGGCC
GCCCTCCTTCTCGCCACGGACCCCCCCCGCCTCCGACAGGCAGAGGACTT
GTTCATGGAGATGCTGGAAGGCGGCCCCTTCCCTGACTGCTACACCTTCT
CCATGCTCCTCCGCGCTTACTCCCCCTCCCTTCCATCCCGACCCCCGCCT
CCTCGCTCCCCGGTGGACCTCCTACAGCGCCTCCCGAATGCCCTACTCCA
ACCTAAGGGGGATCAGGGGGAGGATGGGCTGGAACGCGCAGCAGCTGCCG
TGGACGCCGCCGTGGCCGATGCCGGCGACGACCCTGCTTCCTGCCCCCCT
CGCGGAATTTTGCCGGGGCCCGACCGACTGCTGGAGCTGATGGCTTCGCG
CCATGATTTGGGGGTGCTGTTGGACACGACGGCCGTAAACAGCCTCCTCC
TGGCCCTGGTCAAGGCGGGAGCGCTGAAGCGGGCCCTGGAGGTCTTCCAA
GCCTTCAAGCGCGGGAGCCTGTCGGCGCTGGTGCCCATCCCCCCGGAAAG
GTTCGCCTCTCCCGAAGAAGGTCGGCCAGGCATTCCGGACGTTATCACCT
ACACCATCCTGGTGAAGGGGGTGGCGGGCTCGGATAACGTGTACGCTGGG
TCCAAAATTATGCAGCTCTACCGAGAGATGCGTGGGGAGTTCCAGATCCT
CCCCGACCTGCAGCTCGCCTACGCTTTGGTAAATTCCTTCGCATTGGCTC
GCTCCCGTGTAGGGGGTTTGGGTGTGGAGGATCTGGACGAGGTCCTGGGA
GACCTGCGGGAACTCGGTTGGAAGGGCGAAGTTCTGTCTCGGCTGGAAAA
GCGTGTCTCGAGCTACAGGGGTCTGTATTCCGAGGCTTGGAAGGAGGGCC
GAGGAGGCTGGGAGGATTCCAGGGGCGGCCGAGATAGAAGGCCCAAGGCG
TCGGACCGACTCTTCGATAAGTACGGGTGGAATAAGTTCGACAGCGGTTA
CAATTTCTTCGCGTGA back to top
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