EWM28737.1, cds1897 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|585111160|gb|EWM28737.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1847.79 bits (4785), Expect = 0.000e+0 Identity = 921/921 (100.00%), Postives = 921/921 (100.00%), Query Frame = 0
Query: 1 MIVRRCGRQRHMPIRALLHPNGATRVATFLSIVCVFASLSVQYALRLHPSTPMTCRKSSSISVVSLSDRRKCGDICKHYAVSSLTAGSGSEDDSPTMRRRPPPPWPRPSPSATSAYTVAEVKALGERIRKGIDLNNAFKDLRNWRMADEGRTPVPDAMYRAILEHCRHPRPPRAYASKMLGLAGNVVQSYFLDVVASSSAPSALPVKEFREVLQAMSRARDAEGAVALLRLLTLQCQENGGKAGPASSYLDEYLFFLVVKCCCADAEEGSKRARSTPALAAVAPLMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPKGDQGEDGLERAAAAVDAAVADAGDDPASCPPRGILPGPDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLGDLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGRGGWEDSRGGRDRRPKASDRLFDKYGWNKFDSGYNFFA 921
MIVRRCGRQRHMPIRALLHPNGATRVATFLSIVCVFASLSVQYALRLHPSTPMTCRKSSSISVVSLSDRRKCGDICKHYAVSSLTAGSGSEDDSPTMRRRPPPPWPRPSPSATSAYTVAEVKALGERIRKGIDLNNAFKDLRNWRMADEGRTPVPDAMYRAILEHCRHPRPPRAYASKMLGLAGNVVQSYFLDVVASSSAPSALPVKEFREVLQAMSRARDAEGAVALLRLLTLQCQENGGKAGPASSYLDEYLFFLVVKCCCADAEEGSKRARSTPALAAVAPLMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPKGDQGEDGLERAAAAVDAAVADAGDDPASCPPRGILPGPDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLGDLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGRGGWEDSRGGRDRRPKASDRLFDKYGWNKFDSGYNFFA
Sbjct: 1 MIVRRCGRQRHMPIRALLHPNGATRVATFLSIVCVFASLSVQYALRLHPSTPMTCRKSSSISVVSLSDRRKCGDICKHYAVSSLTAGSGSEDDSPTMRRRPPPPWPRPSPSATSAYTVAEVKALGERIRKGIDLNNAFKDLRNWRMADEGRTPVPDAMYRAILEHCRHPRPPRAYASKMLGLAGNVVQSYFLDVVASSSAPSALPVKEFREVLQAMSRARDAEGAVALLRLLTLQCQENGGKAGPASSYLDEYLFFLVVKCCCADAEEGSKRARSTPALAAVAPLMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPKGDQGEDGLERAAAAVDAAVADAGDDPASCPPRGILPGPDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLGDLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGRGGWEDSRGGRDRRPKASDRLFDKYGWNKFDSGYNFFA 921
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|553184976|ref|XP_005854182.1| (pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294878|gb|EKU22178.1| pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 287.345 bits (734), Expect = 2.407e-88 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 385 GESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAG 531
GESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAG
Sbjct: 1 GESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAG 147
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|1023176433|pdb|5I9H|A (Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat Protein Dppr- U8g2 In Complex With Its Target Rna U8g2) HSP 1 Score: 157.147 bits (396), Expect = 2.215e-37 Identity = 109/341 (31.96%), Postives = 163/341 (47.80%), Query Frame = 0
Query: 301 YSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLL 637
Y+ L R ER L E+ RR+ VA V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V YT LI L G+L++A + E M G+ P+ TYT L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+
Sbjct: 19 YTTVLHALSRAGRYERALELFAEL--RRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLI 338 HSP 2 Score: 146.362 bits (368), Expect = 9.023e-34 Identity = 105/361 (29.09%), Postives = 165/361 (45.71%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYS 641
L EM I Y+ + G + + L EEM+++ + D V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +Y T++ L + L A+ L+ EM + G++PD VT TL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T+ ++ +Y
Sbjct: 73 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDELTYRRVVESYC 412 HSP 3 Score: 112.849 bits (281), Expect = 1.452e-22 Identity = 111/422 (26.30%), Postives = 177/422 (41.94%), Query Frame = 0
Query: 477 SVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPKGDQGE---DGLERAAAAVDA-----AVADAGDDPASCPPRGILPG------PDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLGDLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGR 884
V YT ++ AL+ G E+A ++ +R GVAP TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+ + + L + + ++P DGL +A +A + + G P ++ G D L+L + G+ D N+L+ L KAG L AL++F+ + PDV+TY L+ G+ + + + ++L+ EM E I PD+ L++ A LDE L E+ KG ++ V +Y L K G+
Sbjct: 15 DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLIDGL-----CKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK--------------------PDVVTYNTLIDGLCKAGKL---DEALKLFEEMV-EKGIKPDVVTYNTLIDGLCKAGK---------LDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGK 381 HSP 4 Score: 105.916 bits (263), Expect = 2.307e-20 Identity = 78/290 (26.90%), Postives = 124/290 (42.76%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVE 570
L EM I Y+ + G + + L EEM+++ + D V +L+D L + G LD A + +M + ++ V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P TY V+ + RA R E
Sbjct: 143 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDELTYRRVVESYCRAKRFE 418
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|1023176427|pdb|5I9D|A (Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat Protein Dppr- U8a2 In Complex With Its Target Rna U8a2) HSP 1 Score: 156.762 bits (395), Expect = 3.079e-37 Identity = 108/341 (31.67%), Postives = 163/341 (47.80%), Query Frame = 0
Query: 301 YSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLL 637
Y+ L R ER L E+ RR+ VA V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y+ LI L G+L++A + E M G+ PN TY+ L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+
Sbjct: 19 YTTVLHALSRAGRYERALELFAEL--RRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPNVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLI 338 HSP 2 Score: 145.206 bits (365), Expect = 2.071e-33 Identity = 104/361 (28.81%), Postives = 168/361 (46.54%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYS 641
L EM I Y+ + G + + L EEM+++ + D V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +Y+T++ L + L A+ L+ EM + G++P+ VT +TL+ G+LD L + E + +V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T+ ++ +Y
Sbjct: 73 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDELTYRRVVESYC 412 HSP 3 Score: 111.694 bits (278), Expect = 3.853e-22 Identity = 110/422 (26.07%), Postives = 177/422 (41.94%), Query Frame = 0
Query: 477 SVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPKGDQGE---DGLERAAAAVDA-----AVADAGDDPASCPPRGILPG------PDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLGDLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGR 884
V YT ++ AL+ G E+A ++ +R GVAP TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+ + + L + + ++P DGL +A +A + + G P ++ G D L+L + G+ + N+L+ L KAG L AL++F+ + PDV+TY L+ G+ + + + ++L+ EM E I PD+ L++ A LDE L E+ KG ++ V +Y L K G+
Sbjct: 15 DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLIDGL-----CKAGKLDEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK--------------------PDVVTYNTLIDGLCKAGKL---DEALKLFEEMV-EKGIKPDVVTYNTLIDGLCKAGK---------LDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGK 381 HSP 4 Score: 104.76 bits (260), Expect = 6.032e-20 Identity = 77/290 (26.55%), Postives = 125/290 (43.10%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVE 570
L EM I Y+ + G + + L EEM+++ + D V ++L+D L + G LD A + +M + ++ V Y + G + A G+ P+ +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P TY V+ + RA R E
Sbjct: 143 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKG------IKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIK-PNVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDELTYRRVVESYCRAKRFE 418
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|1023176431|pdb|5I9G|C (Chain C, Crystal Structure Of Designed Pentatricopeptide Repeat Protein Dppr- U8c2 In Complex With Its Target Rna U8c2) HSP 1 Score: 156.377 bits (394), Expect = 3.716e-37 Identity = 108/357 (30.25%), Postives = 170/357 (47.62%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLL 637
L AE+ R + + Y+ + G + + L EEM+++ + D V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + SV Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+
Sbjct: 38 LFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLI 373 HSP 2 Score: 143.665 bits (361), Expect = 7.027e-33 Identity = 136/507 (26.82%), Postives = 213/507 (42.01%), Query Frame = 0
Query: 333 LDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILE---SSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPKGDQGEDGLERAAAAVDAAVADAGDDPASCPPRGILPGPDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAY-ALVNSFALAR 834
LD A ++L AL+R G +RA + ++ + T V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P+V TYN ++ L +AG+++ L L EEM K G+ P +VT NTL+ L A +L +A LF EM+E G PD T++ L+ DGL + A +D A+ +L E M + G+ D N+L+ L KAG L AL++F+ + PDV+TY L+ G+ + + + ++L+ EM E I PD +L Y +V S+ A+
Sbjct: 14 LDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPT------VVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPSVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLI-------------------------------------DGLCK-AGKLDEAL--------------------KLFEEMVEK---GIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK--------------------PDVVTYNTLIDGLCKAGKL---DEALKLFEEMV-EKGIKPD-ELTYRRVVESYCRAK 415 HSP 3 Score: 120.939 bits (302), Expect = 2.796e-25 Identity = 87/314 (27.71%), Postives = 139/314 (44.27%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVT 594
L EM I Y+ + G + + L EEM+++ + D V N+L+D L + G LD A + +M + ++ V Y + G + A G+ P +YNT++ L + L A+ L+ EM + G++P VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD +T
Sbjct: 108 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDELT 403 HSP 4 Score: 112.464 bits (280), Expect = 1.711e-22 Identity = 110/422 (26.07%), Postives = 178/422 (42.18%), Query Frame = 0
Query: 477 SVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPK---GDQGEDGLERAAAAVDA-----AVADAGDDPASCPPRGILPG------PDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLGDLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGR 884
V YT ++ AL+ G E+A ++ +R GVAP TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+ + + L + + ++P + DGL +A +A + + G P+ ++ G D L+L + G+ N+L+ L KAG L AL++F+ + PDV+TY L+ G+ + + + ++L+ EM E I PD+ L++ A LDE L E+ KG ++ V +Y L K G+
Sbjct: 15 DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLIDGL-----CKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK--------------------PDVVTYNTLIDGLCKAGKL---DEALKLFEEMV-EKGIKPDVVTYNTLIDGLCKAGK---------LDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGK 381 HSP 5 Score: 106.686 bits (265), Expect = 1.679e-20 Identity = 78/290 (26.90%), Postives = 124/290 (42.76%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVE 570
L EM I Y+ + G + + L EEM+++ + D V N+L+D L + G LD A + +M + ++ V Y + G + A G+ P +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P TY V+ + RA R E
Sbjct: 143 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDELTYRRVVESYCRAKRFE 418
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|1023176429|pdb|5I9F|A (Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat Protein Dppr- U10 In Complex With Its Target Rna U10) HSP 1 Score: 153.68 bits (387), Expect = 3.540e-36 Identity = 107/341 (31.38%), Postives = 161/341 (47.21%), Query Frame = 0
Query: 301 YSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLL 637
Y+ L R ER L E+ RR+ VA V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+
Sbjct: 19 YTTVLHALSRAGRYERALELFAEL--RRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLI 338 HSP 2 Score: 151.754 bits (382), Expect = 1.405e-35 Identity = 107/361 (29.64%), Postives = 167/361 (46.26%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYS 641
L EM I Y+ + G + + L EEM+++ + D V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T+ ++ +Y
Sbjct: 73 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDELTYRRVVESYC 412 HSP 3 Score: 141.739 bits (356), Expect = 3.521e-32 Identity = 129/458 (28.17%), Postives = 200/458 (43.67%), Query Frame = 0
Query: 396 PPPSRVGGSTGLPLPDQYSYNTVLRALGEED-LGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILE---SSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPK---GDQGEDGLERAAAAVDA-----AVADAGDDPASCPPRGILPG------PDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAY-ALVNSFALAR 834
PP SR+ D +Y TVL AL A+ L+ E+R GV P VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+ + + L + + ++P + DGL +A +A + + G P ++ G D L+L + G+ D N+L+ L KAG L AL++F+ + PDV+TY L+ G+ + + + ++L+ EM E I PD +L Y +V S+ A+
Sbjct: 9 PPGSRL---------DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLIDGL-----CKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK--------------------PDVVTYNTLIDGLCKAGKL---DEALKLFEEMV-EKGIKPD-ELTYRRVVESYCRAK 415 HSP 4 Score: 114.39 bits (285), Expect = 4.554e-23 Identity = 111/422 (26.30%), Postives = 178/422 (42.18%), Query Frame = 0
Query: 477 SVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQRLPNALLQPK---GDQGEDGLERAAAAVDA-----AVADAGDDPASCPPRGILPG------PDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFALARSRVGGLGVEDLDEVLGDLRELGWKGEVLSRLEKRVSSYRGLYSEAWKEGR 884
V YT ++ AL+ G E+A ++ +R GVAP TY L+ G +AG + M E+G ++P V TYN ++ L +AG+++ L L EEM K G+ PD+VT NTL+ L A +L +A LF EM+E G PD T++ L+ + + L + + ++P + DGL +A +A + + G P ++ G D L+L + G+ D N+L+ L KAG L AL++F+ + PDV+TY L+ G+ + + + ++L+ EM E I PD+ L++ A LDE L E+ KG ++ V +Y L K G+
Sbjct: 15 DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK----GIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKGIKPDVVTYNTLIDGL-----CKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK--------------------PDVVTYNTLIDGLCKAGKL---DEALKLFEEMV-EKGIKPDVVTYNTLIDGLCKAGK---------LDEALKLFEEMVEKG-----IKPDVVTYNTLIDGLCKAGK 381 HSP 5 Score: 109.383 bits (272), Expect = 2.194e-21 Identity = 79/290 (27.24%), Postives = 125/290 (43.10%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVE 570
L EM I Y+ + G + + L EEM+++ + D V N+L+D L + G LD A + +M + ++ V Y + G + A G+ PD +YNT++ L + L A+ L+ EM + G++PD VT NTL+ G+LD L + E + V Y LI L G+L++A + E M G+ P+ TY L+ G +AG + M E+G ++P TY V+ + RA R E
Sbjct: 143 LFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG--IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG------IKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK-PDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKG-----IKPDELTYRRVVESYCRAKRFE 418
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|1201296771|gb|OUZ99809.1| (Pentatricopeptide repeat [Macleaya cordata]) HSP 1 Score: 136.346 bits (342), Expect = 2.960e-29 Identity = 102/377 (27.06%), Postives = 173/377 (45.89%), Query Frame = 0
Query: 274 RSTPALAAVAPLMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPV-----RRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAV----PASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAY 640
RS ++A L EM R + + + ++ ++GF R E+ EM R + + V N+L+DA +VG +D A + MAQ LR + Y V R G R S+ GL +PD+ +YNT++ E ++ A+ L+ EM GV P+ +T L+ + G L+R + ++ V P + YT + + +G L +A VL+ M G +P+ TY +++ G G M G V M+ +G L P V +Y+ ++ R ++ L++EM K G+ D++T ++L+ L + RL +A +LF EML G PD +T++ L+ +
Sbjct: 199 RSKESVAKAEELYGEMIRSHVSPNVYSFNILIRGFCRDGKLEKALGFFNEM--ERTGCSPNVVTFNTLVDAYCKVGKIDEAFKLFELMAQRE------LRPNLITYNAVINGLCRLGRMKDTKRVVEEMESK-----GL-VPDKVTYNTLVNGYCMEGNVHQALVLHSEMVQKGVTPNVITYTALINSMCRAGNLNRAMDFMDQMRVRGLHPNEIT-YTTFVDGFSKQGFLVEAYGVLKEMTECGFSPSVVTYNSIINGYCMLGRMDGALGVVRDMEVKG-----LTPDVVSYSTLLTGFCRNLDLDKAFQLKQEMINK----GIVLDVITYSSLIQGL---CEQRRLNEACELFQEMLSSGLPPDEFTYTTLINGF 548 HSP 2 Score: 103.99 bits (258), Expect = 4.419e-19 Identity = 133/556 (23.92%), Postives = 220/556 (39.57%), Query Frame = 0
Query: 303 AALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRAL--GEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLI---LESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPS---------LPSRPPPPRSP-VDLLQRLPNALLQPKGDQGEDGLERAAAAVDAAVADAGDDPASCPPRGILPG------PDRLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVAGSDNVYAGSKIMQLYREMRGEFQILPDLQLAYALVNSFA-LARSR 836
AL R + + ++LAE+++ + + A V +S+ + L L + + D+ SY + + + + + + S+G +P S+N+VL A+ +E + A LY EM + V P+ + N L+ G+L++ L +E + +V + L+ A G++++A + E M + PN TY A++ G R G M V M+ +G L P TYN ++ G V L L EM K GV P+++T L+ ++ A + L +A D +M G P+ T++ + +S L SP V + N G G+ R D V G P +L G D+ +L + G++LD +SL+ L + L A E+FQ LS+ +P PD TYT L+ G NV K + L+ EM + LPD+ L+N + ARSR
Sbjct: 102 VALHILTRFKLYKTAQSLAEDLVSKYSDPA---VGSSSIFECLKSTYHLCNSSSAVFDLLVKSYSNLNMIDKALLTIN--------------------LSKSSGF-VPGVLSFNSVLDAIFRSKESVAKAEELYGEMIRSHVSPNVYSFNILIRGFCRDGKLEKALGFFNEMERTGCSPNVVTFNTLVDAYCKVGKIDEAFKLFELMAQRELRPNLITYNAVINGLCRLGRMKDTKRVVEEMESKG-----LVPDKVTYNTLVNGYCMEGNVHQALVLHSEMVQK----GVTPNVITYTALINSMCRAGN---LNRAMDFMDQMRVRGLHPNEITYTTFVDGFSKQGFLVEAYGVLKEMTECGFSPSVVTYNSIINGYCMLGRMDGALGVVR-----DMEV--KGLTPDVVSYSTLLTGFCRNLDLDKAFQLKQEMINKGIVLDVITYSSLIQGLCEQRRLNEACELFQEM----LSSGLP----------------PDEFTYTTLINGFCIEGNV---KKALHLHDEMIKK-GFLPDVVSYSVLINGLSKQARSR 590 HSP 3 Score: 75.485 bits (184), Expect = 2.793e-10 Identity = 78/337 (23.15%), Postives = 141/337 (41.84%), Query Frame = 0
Query: 286 MAEMDRLRI---PKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEED-LGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLI----LESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAV------GRMQEEGKRDPRLRPTVW-----TYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALL 603
M MD++R+ + Y+ + GF + + + +EM + + V NS+++ +G +D A G++RDM L V Y + G + A + + G+ L D +Y+++++ L E+ L A L++EM +G+ PD T TL+ G + + L + ++ +P V Y+ LI+ L+ + +A+ +L + G P TY +L G + V A + G M+E + + W YN ++ R G V L L +EM +G P+ V+ L+ AL
Sbjct: 383 MDFMDQMRVRGLHPNEITYTTFVDGFSKQGFLVEAYGVLKEMTECG--FSPSVVTYNSIINGYCMLGRMDGALGVVRDMEVKG------LTPDVVSYSTLLTGFCRNLDLDKAFQLKQEMINKGIVL-DVITYSSLIQGLCEQRRLNEACELFQEMLSSGLPPDEFTYTTLINGFCIEGNVKKALHLHDEMIKKGFLP-DVVSYSVLINGLSKQARSREAKQLLFRLLYEGSVPLDVTYD-ILMGHCSNSEFKSVVALIKSFCMKGLMKEADEVFQSMIKKSWKPDEAAYNVIIHGHCRGGNVSKALGLYKEMV----DSGFVPNTVSVIALIRALF 704
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|659070136|ref|XP_008453581.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Cucumis melo]) HSP 1 Score: 133.265 bits (334), Expect = 1.448e-28 Identity = 91/332 (27.41%), Postives = 164/332 (49.40%), Query Frame = 0
Query: 317 VEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASY----VSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRAL-GEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILE---SSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAY 640
VE + +EM+ R+ ++ + + N +++ L +VG L++A ++ DM + V+ + L G + G G ++ A VG P+ ++N ++ +E++ A+ ++ EM+ G++P VT N+L+ G+L+ ++L+ SS + +V Y ALI+ K +LE+AR++ +++ G+ PN T+ LL G + G M + M E+G P V TYN ++ R G++E + L EM + GV D VT N L++A +P ++A L EML+ G P T+++LL Y
Sbjct: 214 VEFVYKEMIRRK--ISPNLITFNIVINGLCKVGKLNKAGDVIDDMKVWGFWPNAVTYNTLIDGYC-----KMGRVGKMYKADAILKEMVGNKVS---PNIVTFNVLIDGFCKDENVSGALKVFEEMQSQGLKPTVVTYNSLINGMCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKKLEEARELFDNIGKQGLTPNVITFNTLLDGYCKCGKMEEAFLLQKVMLEKG-----FLPDVSTYNCLIVGFCREGKMEEVKNLLNEMECR----GVKADTVTYNILISAWCEKKEP---KKAARLIDEMLDRGLKPSHLTYNILLNGY 523 HSP 2 Score: 88.5817 bits (218), Expect = 2.342e-14 Identity = 62/235 (26.38%), Postives = 111/235 (47.23%), Query Frame = 0
Query: 414 SYNTVLRAL-GEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAV----PASVEGYTALISALAGK---GELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAY 640
S N +L AL E + G +Y+EM + P+ +T N ++ G+L++ +++ V P +V Y LI G++ KA +L+ M V+PN T+ L+ G + +++G MQ +G L+PTV TYN+++ + G++ L +EM + + P+++T N L+ +L +A +LF + + G P+ TF+ LL Y
Sbjct: 197 SCNPLLSALVKESEFGDVEFVYKEMIRRKISPNLITFNIVINGLCKVGKLNKAGDVIDDMKVWGFWPNAVT-YNTLIDGYCKMGRVGKMYKADAILKEMVGNKVSPNIVTFNVLIDGFCKDENVSGALKVFEEMQSQG-----LKPTVVTYNSLINGMCNEGKLNEAKVLLDEMLS----SNLKPNVITYNALING---YCKKKKLEEARELFDNIGKQGLTPNVITFNTLLDGY 418 HSP 3 Score: 86.6557 bits (213), Expect = 7.825e-14 Identity = 86/349 (24.64%), Postives = 145/349 (41.55%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGE-EDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLD--RGLLI-LESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPD 629
++ EM ++ + ++ + GF + + + EEM + + + V NSL++ + G L+ A+ +L +M +S L+ V Y + G A G GL P+ ++NT+L + + A L + M + G PD T N L+ G+++ + LL +E V A Y LISA K E +KA +++ M G+ P+ TY LL G G++ +M++E R+ V TYN ++ R G++E L EM K G+ P+ T E + +EM+E G PD
Sbjct: 290 ILKEMVGNKVSPNIVTFNVLIDGFCKDENVSGALKVFEEM--QSQGLKPTVVTYNSLINGMCNEGKLNEAKVLLDEML------SSNLKPNVITYNALINGYCKKKKLEEARELFDNIGKQGLT-PNVITFNTLLDGYCKCGKMEEAFLLQKVMLEKGFLPDVSTYNCLIVGFCREGKMEEVKNLLNEMECRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDRGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKE-----RIWANVVTYNVLILGYCRKGKLEDANGLLNEMLEK----GLIPNRTT-------------------YEIIKVEMMEKGFLPD 601
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|449454139|ref|XP_004144813.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Cucumis sativus] >gi|778667046|ref|XP_011648861.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Cucumis sativus]) HSP 1 Score: 132.88 bits (333), Expect = 1.828e-28 Identity = 92/332 (27.71%), Postives = 163/332 (49.10%), Query Frame = 0
Query: 317 VEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASY----VSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRAL-GEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILE---SSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAY 640
VE + +EM+ R+ ++ + + N++++ L +VG L++A ++ DM + V+ + L G + G G ++ A V P+ ++N ++ +E+L AA+ ++ EM+ G++P VT N+LV G+L+ ++L+ SS + +V Y ALI+ K LE+AR++ +++ G+ PN T+ LL G + G M + M E+G P TYN ++ R G++E + L EM + GV D VT N L++A +P ++A L EML+ G P T+++LL Y
Sbjct: 214 VEFVYKEMIRRK--ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYC-----KMGRVGKMYKADAILKEMVENKVS---PNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKG-----FLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCR----GVKADTVTYNILISAWCEKKEP---KKAARLIDEMLDKGLKPSHLTYNILLNGY 523 HSP 2 Score: 89.7373 bits (221), Expect = 8.330e-15 Identity = 62/234 (26.50%), Postives = 110/234 (47.01%), Query Frame = 0
Query: 414 SYNTVLRAL-GEEDLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILESSAVPA---SVEGYTALISALAGK---GELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAY 640
S N +L AL E + G +Y+EM + P+ +T NT++ G+L++ +++ V +V Y LI G++ KA +L+ M V+PN+ T+ L+ G + +++ MQ +G L+PTV TYN+++ L G++ L +EM + + P+++T N L+ L +A +LF + + G P+ TF+ LL Y
Sbjct: 197 SCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQG-----LKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS----SNLKPNVITYNALING---YCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGY 418 HSP 3 Score: 87.8113 bits (216), Expect = 3.775e-14 Identity = 86/349 (24.64%), Postives = 145/349 (41.55%), Query Frame = 0
Query: 285 LMAEMDRLRIPKSSFLYSAALKGFGRMQWRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYVSTSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLD--RGLLI-LESSAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPD 629
++ EM ++ +S ++ + GF + + + EEM + + + V NSL++ L G L+ A+ +L +M +S L+ V Y + G A G GL P+ ++NT+L + + A L + M + G P+ T N L+ G+++ + LL ++ V A Y LISA K E +KA +++ M G+ P+ TY LL G G++ +M++EG+ V TYN ++ R G++E L EM K G+ P+ T E + EM+E G PD
Sbjct: 290 ILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEM--QSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEML------SSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT-PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGR-----WANVVTYNVLIQGYCRKGKLEDANGLLNEMLEK----GLIPNRTT-------------------YEIIKEEMMEKGFLPD 601
BLAST of EWM28737.1 vs. NCBI_GenBank
Match: gi|719991409|ref|XP_010253257.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Nelumbo nucifera] >gi|719991415|ref|XP_010253258.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Nelumbo nucifera] >gi|719991418|ref|XP_010253259.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Nelumbo nucifera] >gi|719991428|ref|XP_010253262.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Nelumbo nucifera] >gi|719991437|ref|XP_010253265.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Nelumbo nucifera]) HSP 1 Score: 133.265 bits (334), Expect = 3.820e-28 Identity = 150/625 (24.00%), Postives = 257/625 (41.12%), Query Frame = 0
Query: 192 LDVVASSSAPSALP-VKEFREVLQAMSRARDAEGAVALLRLLTLQCQENGGKAGPASSYLDEYLFFLVVKCCCADAEEGSKRARSTPALAAVAPLMAEMDRLRIPKSSFLYSAALKGFGRMQ--WRERVEALAEEMMDRREEVALDTVALNSLLDALTRVGDLDRARGILRDMAQASYV----STSYLRRGVAEYRPVRRGESGSPSRSTAPPPSRVGGSTGLPLPDQYSYNTVLRALGEE-DLGAAIALYREMRDAGVQPDRVTVNTLVAACAAHGRLDRGLLILES---SAVPASVEGYTALISALAGKGELEKARDVLESMRAAGVAPNARTYTALLQGAARAGDMAGVWAAVGRMQEEGKRDPRLRPTVWTYNAVMAALARAGRVEGMLALREEMAGKRGKAGVAPDIVTCNTLLAALLLATDPPRLRQAEDLFMEMLEGGPFPDCYTFSMLLRAYSPSLPSRPPPPRSPVDLLQR--------LPNALLQPKGDQGEDGLERAAAAVDAAVADAGDDPASCPP---RGILPGPD--RLLELMASRHDLGVLLDTTAVNSLLLALVKAGALKRALEVFQAFKRGSLSALVPIPPERFASPEEGRPGIPDVITYTILVKGVA 792
++++ S LP V+ F +L ++R R E + + + + +G + DEY+ VV+ C L ++ +M+ I S Y+ + G + Q W EA+ + + + D + L+ L +VG L+ A ++ +M + +V + SYL + R+GE + + ++G +P+ ++YN ++ +L +E L A L+ M G+ P+ +T + L+ + G+LD LL+L+ + + A+V Y +LI A G+L KA + M G+AP RTY +L+ G + G++ ++ M E G + P +T+ A++ L A + L EM + GV P+ VT N ++ D + +L EM+E G PD YT+ L+ L R + +D LQR +ALL +G L A A+ V D C G+L D RL E++ +D G+ D S++ A K G LK A F + IP+V+TYT L+ G+
Sbjct: 179 VEIIKLMKQRSLLPEVRTFSAILNGLNRIRHFELVLNIFDQMII----SGLRP-------DEYICSAVVRSLC-----------ELKDLVRAKEMIRQMETNGISLSIVTYNVLIHGLCKNQRVW----EAIEFKNFLGLKGLKADAITYCILVHGLCKVGRLNIAVDLMNEMLELGFVPSEDACSYLVDALR-----RKGEI-AEAFGLVDKLGKLG-----IVPNLFAYNALMNSLCKEGKLKEAQLLFTHMSKKGLSPNDITYSILIDSLCKRGKLDEALLLLDKMVKAGIWATVYPYNSLIGGHAKLGKLNKAEALFNEMIKKGLAPTVRTYQSLISGYCKVGNLHKAFSLYHEMSERG-----ISPNTYTFTALIDGLCHAKMMVEASILFNEML----EHGVIPNEVTYNVMIDGYCRVGDTVK---GFELLDEMVEKGLKPDTYTYRPLISGL--CLTGRVSEAKEFLDDLQREHKKLNEMCFSALLHGYCKEGR--LHDAFASCREMVESGIDMDIVCYAVLIYGVLKQHDTARLSEILNKMYDQGLWPDMIIYTSIIDAYCKLGNLKGAFA--------------------FWNKMIAEGCIPNVVTYTTLINGLC 730 The following BLAST results are available for this feature:
BLAST of EWM28737.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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