rna1900, rna1900 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1900
Unique Name	rna1900
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2905
Alignment location	CM002458.1:423175..425417 +

Link to JBrowse

Properties


Property Name	Value
Product	vesicle transport through interaction with t-snares 1a
Orig transcript id	gnl\|cribi\|Naga_100002g121.4889.mrna
Orig protein id	gnl\|cribi\|Naga_100002g121.4889
Gene	SNR13
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:423175..425417 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SNR13	gene1815	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1900	rna1900-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28770.1	cds1895	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:423175..425417+
coding sequence from alignment at CM002458.1:423175..425417+

mRNA sequence

>rna1900 ID=rna1900|Name=rna1900|organism=Nannochloropsis gaditana|type=mRNA|length=2905bp
ACGAAATCTTTTGTTTATTACATTAAATCTATACACGATGTCCTACAGGT
TGGTTGGGACGCTTGAGAGGGAGATTGGAGACATTTGTTTTCAAGTCGTG
AAAGAAACGGAATCGAGACCCATGCAGTGTGCGATAAGGAGGACACAAGG
GCATCCCATAGAAAGACATGGCTAATTGGGTTCTCGTATTCCCTAATTGC
AGAGCAATGTGCCCAGGGATGGAGGATCCTAGCAGTGTAGTTATGGTCGT
GTGAGACATCGAACAGTTCGGAATGGGCCTGCAGGATCTGAAAGCGTTAT
CCTCATCCTATGCGCCTCCACGCGCGACCGCTCCTGATCGTGTATGATTT
CGAGCGCAAAAGCATTAAAGGCTTTTTGTCTGTGATATATAGTCTTATCT
GACGTATTGGCGACGCGGGGATAGAATAATGTCGTGGGTGTTCCTCTCAC
TCATTGCGAATTGCCCCACCTAGAAAAAGTCAAGAAAAGGCCATCATGCA
TAAGCCATCCCAGTATGCGTGAAGTCATGTCAAACTTTCGGGAGCAAGAA
GAGGAACAGCGAGAATTTTTGCTCCACCGCCCTCCCCAGGACCGGACCTC
CCTTTCCCCCCCGCACGGCCGGTCCATCGCCATGACGGACATCTTCGAGT
CCTATGAAGACGAGTTCCGCGCGCTGGCGGGCGATTGTCAGAAGAAGCTC
TCCAACCTCCTCACCTACGAGACGCATGGCGACAAGATACAGAGCCTTCT
CCGGCAAGCCTCCCCTCAGGTCACCCAGCTCGAGGGCCTGATCAAGCAGA
TGAAGCTGGAGGTCCGTTCGCTGGACGCGGGCACGAAAGCCGCCCTCTCC
GCCAAAGTGCAGACCTACGAGAGGGTCTTGACCGGGGTCAAGGCCGACCT
GGGCCGCGCGCGGGAACGGGAGGAGAAGGACGCGTTGCTAGGAGCGGGGG
GGGGCGTGTCGATGGTGCAGCGACAAAGATTGCTCGAGACGAGCGAGAGG
CTGGCGCACCAAAACCGGACTATTGACAACGCGCGGAAGGTGATGGCGGA
GACGGAGCAAGTCGGCATTCATATCGGAGAGGAGCTGGAATCGAACCGGG
AAAAAATTCAGAGTATTCGAGGCAAGGTTTCAGAGGTTGGCGGCTTAACC
AATACAGCCCGGCGCTTGATATCCAGCATTAGCCGCAGGGAGACCCAACA
AAAGCTCATGTTGTGGGGTGTGGCTGCCTCGTTGCTTATTGCTATTATCC
TAATAATTTACTATTCCTCTCGGTAGGATGCAGTGTGCGATGGGCCATGA
GAGCCAAAAATAAGCGTTGGTTTCATGAGTTGCTTGTTTTGTCGCCATTT
CCTTTTGAGCTTGCGTCGCTCATCTTTGATATATCCTGGCCAGGCAGGAG
CTTAAAGAAAACTAAAAGCTCGAGACACGTGATGGATTTACGCAGGTAAA
ATTTTCGACATAAAACTGCAGCTTATACAGGCACGTTTGACTGGCATATC
CGTGAGTATTCAGTGCCCTTTCATCATAACATTGTTGAGCGTCAAATGCG
GGCTTCTTGCGGTAGGGATAACCTCCTGACCCCTTCTAATAATTTTGACC
TCGAAGCGATTGAAGACTCTTAAATCGCTCGAACTTCACACCCCTTTACT
TTTTTGTGGTCTATCAAGAGAAAATGCGGGAAGAATCTTGTCGCCTACTG
CGTGGTGCGCCTTCATCAGTCGTCCAAACTCAGGACGCAGACGGTTCCAA
GTTGAGTTGAAGCGATGAGAGAGCGGATGACCCCCGCATGCCTGGAAGAC
CTAAGCCGTCATCTCCGTCACCTTATCCCACCCTCACCCTTTCACATGCA
CGCAGGAGAAAAGGAACCACAAGGTACCATGAAAAGGAGACGAAAGAGTA
CTTCTCCTTCGTCTGGTTCCTCTACCAAGTTTCGACAAAAGAGCTTTCCC
ATCCTCATGGGCGATGCGCTGAAGCCTGCCACGCTCCTCCGGATGCCAGA
GGAAGACATGCCCTTGCCCCCGCACGACGTCCCGATCTTCTTTTATAAAG
AGGAAGTGATCATAAGGGACGATGAGGGCAGTGACAGTGAGGGCATGAAA
GCCGTGGGACGGGGCTTGGTGAAGCCAGGCCAAGCACGTAAGCGGCGTTT
TCAGCCTCGACCCACCTTCCGATGGGTCCTGGAGGCCCTGGACATCAAAC
TTCACGGGAATACGAATAAAATCCAAGCCAAAGACGGATCCGCTTATTTC
ATTCTTCGTGTAGACGAATCCACCCGGGAGACGCGGCTCGTGCCACTCGT
GGAGACGGTCATGTTGAGGCAGACGGCGCCGGACGATCGGGGGGATGAGG
AACGCTCCCAGTCGAGGCGACGGGCAGCCGAGGAGTACATCGAGCATGGG
AACCGTTTCGAGCAGCGCGCGGAGGCATGGGCCAAACGGTATGGGCGGAG
ACTGGTGGATGTGTTGGGTGTGGAGGAGGAAGAGGGGGAGGAGGAGGGGC
ATGGAGGGGCGAGGGCCAGGAGGATGGGGCGAGGTGGGAGGAGAGCCTGG
CAACGGACGCACCGGGTGGATGAGGACGTAGAGGCGGGGGAGATGGACCA
CAACCCATCCACGAAGGTGGGAACGAGCTACCAGGACGTGTTCGCCTTGA
TGGAGGGGGAGGAGGGGGCCGGGGGGGCCGACGGAGGGGGGAAAGGGAAG
CGCTGGCGGTCGCGTTTGAGACGGTGGACACGGGAGAGGTCCCGGACGCA
GCAGAGGAAGGCTTCGGCGCTCCCGAGTACGGCGACGAGTACTGCCAGCC
TGAGCACCTGGTGGCGGCGAGAGAGGCGGAAGAGGAGGAGGGGGCGGAGC
TGCTTGAGGAGGAGGAGAGTAGTTTTGAGGGGGGCAGGAGCAGCGAGAGC
GAGGA

protein sequence of rna1900

>rna1900-protein ID=rna1900-protein|Name=rna1900|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDE
FRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEV
RSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSM
VQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQS
IRGKVGEGQGMTEHARKLVKEMTSRWF

mRNA from alignment at CM002458.1:423175..425417+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1900 ID=rna1900|Name=rna1900|organism=Nannochloropsis gaditana|type=mRNA|length=2243bp|location=Sequence derived from alignment at CM002458.1:423175..425417+ (Nannochloropsis gaditana)
ACGAAATCTTTTGTTTATTACATTAAATCTATACACGATGTCCTACAGGT
TGGTTGGGACGCTTGAGAGGGAGATTGGAGACATTTGTTTTCAAGTCGTG
AAAGAAACGGAATCGAGACCCATGCAGTGTGCGATAAGGAGGACACAAGG
GCATCCCATAGAAAGACATGGCTAATTGGGTTCTCGTATTCCCTAATTGC
AGAGCAATGTGCCCAGGGATGGAGGATCCTAGCAGTGTAGTTATGGTCGT
GTGAGACATCGAACAGTTCGGAATGGGCCTGCAGGATCTGAAAGCGTTAT
CCTCATCCTATGCGCCTCCACGCGCGACCGCTCCTGATCGTGTATGATTT
CGAGCGCAAAAGCATTAAAGGCTTTTTGTCTGTGATATATAGTCTTATCT
GACGTATTGGCGACGCGGGGATAGAATAATGTCGTGGGTGTTCCTCTCAC
TCATTGCGAATTGCCCCACCTAGAAAAAGTCAAGAAAAGGCCATCATGCA
TAAGCCATCCCAGTATGCGTGAAGTCATGTCAAACTTTCgggagcaagaa
gaggaacagcGAGAATTTTTGGTATTTGAAGGGGGTGGCAGGAAAAACGA
TtgcggggaggcagggaggacaggagggcaagCCTGGGCATGACCTGCGT
GCCATACCTCTCGGGCTACAAGGCTGGAGGGGTTTGTGGTTCCTTTTGCG
CGGCTGGCAGGGGATGAATAAGAGCATAGTCACGTTCGCATGTCGTGCAC
CTTTCGACTGTGGTGCAAGGGCAAGCGTGGGGTGGCAAAGAGTCCAAGTC
CTTATTTTTGAATGAAACATGCGCTAGTCTGCTGGCCTATGGATGTGCCT
GTCCACCCTGGCGATGCTTTTCAGGCATGCAACGCTGATCATAGCGTTGC
TATCATTTCGAAGAGTTGGGGCTAGAAGAGTGTCTTGACATGACTATTTG
CCATTTGAGGCTCGAGGCTGTCCATTTCGCCCGCGCAGCTGGCACGTCCA
GGCTGACACGTGTCTCGCCTGGACTCTGACAGGGCCGCACATGACGCTCG
GGTCCTTGTGTGTGTAATCTCGATCTGATTTCATTGTGTATTGAGGCTTG
TATTGGGCTCGGTTGTCGTGCCTCTCTTTGTAGCCCTGACTTCCTCTCCT
AGAGCCTGAGAGCACGCCAGCGCCAAGCGTGTAGTATCAGGTTCAGGCCC
TGTCTCATcacccgccttgtcctctaTATTTTTCTCCAcagctccaccgc
cctccccaggaccggacctccctttcccccccgcacGGCCGGTCCATCGC
CATGACGGACATCTTCGAGTCCTATGAAGACGAGTTCCGCGCGCTGGCGG
GCGATTGTCAGAAGAAGctctccaacctcctcacctaCGAGACGCATGGC
GACAAGATACAGAGCCTTCTCCGGCAAGCCTCCCCTCAGGTCACCCAGCT
CGAGGGCCTGATCAAGCAGATGAAGCTGGAGGTCCGTTCGCTGGACGCGG
GCACGAAagccgccctctccgccaAAGTGCAGACCTACGAGAGGGTCTTG
ACCGGGGTCAAGGCCGACCTGGGCCGCGCgcgggaacgggaggagaagga
cgcgttgctaggagcgggggggggcgtgtcGATGGTGCAGCGACAAAGAT
TGCTCGAGACGAGCGAGAGGCTGGCGCACCAAAACCGGACTATTGACAAC
GCGCGGAAGGtgatggcggagacggagcaAGTCGGTacgtgggagaggaa
taGGGGGCCGCATGCAATCCGAGATGGGCGAGGAGTCTTTGGCACGTCCT
GACCCTTGCATGCACCCACGCGCTTGCAGGCATTCATATCGGAGAGGAGC
TGGAATCGAACCGGGAAAAAATTCAGAGTATTCGAGGCAAGGTACGTTAA
AGATCTCGGCCAAACAGCCTTTCAGGAGGCTATGAGAAGGGGGGTTTGGA
GCCTTTGTACTGTTTGTGTAATATTCAGATGGTGTTTTCGTTGCGATCTG
CTTCTCATGCTGCCTTATCGCTTCACATTTTCTAGGTAGGTGAAGGGCAG
GGTATGACGGAGCACGCAAGGAAACTAGTCAAGGAAATGACCTCAAGATG
GTTTTGAAGGATAGTGCTCGTGATGCGGAAAAATGAGTCGAGGCATCGAT
AAATCGTTGATTCTGgcgttttcttttcccaatGCGTACGCGAACACCAT
TTCTCCACATGGCTTATGAGGACGTACCTCGAGCACCTCCAGG

Coding sequence (CDS) from alignment at CM002458.1:423175..425417+

>rna1900 ID=rna1900|Name=rna1900|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at CM002458.1:423175..425417+ (Nannochloropsis gaditana)
ATGCGTGAAGTCATGTCAAACTTTCgggagcaagaagaggaacagcGAGA
ATTTTTGctccaccgccctccccaggaccggacctccctttcccccccgc
acGGCCGGTCCATCGCCATGACGGACATCTTCGAGTCCTATGAAGACGAG
TTCCGCGCGCTGGCGGGCGATTGTCAGAAGAAGctctccaacctcctcac
ctaCGAGACGCATGGCGACAAGATACAGAGCCTTCTCCGGCAAGCCTCCC
CTCAGGTCACCCAGCTCGAGGGCCTGATCAAGCAGATGAAGCTGGAGGTC
CGTTCGCTGGACGCGGGCACGAAagccgccctctccgccaAAGTGCAGAC
CTACGAGAGGGTCTTGACCGGGGTCAAGGCCGACCTGGGCCGCGCgcggg
aacgggaggagaaggacgcgttgctaggagcgggggggggcgtgtcGATG
GTGCAGCGACAAAGATTGCTCGAGACGAGCGAGAGGCTGGCGCACCAAAA
CCGGACTATTGACAACGCGCGGAAGGtgatggcggagacggagcaAGTCG
GCATTCATATCGGAGAGGAGCTGGAATCGAACCGGGAAAAAATTCAGAGT
ATTCGAGGCAAGGTAGGTGAAGGGCAGGGTATGACGGAGCACGCAAGGAA
ACTAGTCAAGGAAATGACCTCAAGATGGTTTTGAATGCGTGAAGTCATGT
CAAACTTTCgggagcaagaagaggaacagcGAGAATTTTTGctccaccgc
cctccccaggaccggacctccctttcccccccgcacGGCCGGTCCATCGC
CATGACGGACATCTTCGAGTCCTATGAAGACGAGTTCCGCGCGCTGGCGG
GCGATTGTCAGAAGAAGctctccaacctcctcacctaCGAGACGCATGGC
GACAAGATACAGAGCCTTCTCCGGCAAGCCTCCCCTCAGGTCACCCAGCT
CGAGGGCCTGATCAAGCAGATGAAGCTGGAGGTCCGTTCGCTGGACGCGG
GCACGAAagccgccctctccgccaAAGTGCAGACCTACGAGAGGGTCTTG
ACCGGGGTCAAGGCCGACCTGGGCCGCGCgcgggaacgggaggagaagga
cgcgttgctaggagcgggggggggcgtgtcGATGGTGCAGCGACAAAGAT
TGCTCGAGACGAGCGAGAGGCTGGCGCACCAAAACCGGACTATTGACAAC
GCGCGGAAGGtgatggcggagacggagcaAGTCGGCATTCATATCGGAGA
GGAGCTGGAATCGAACCGGGAAAAAATTCAGAGTATTCGAGGCAAGGTAG
GTGAAGGGCAGGGTATGACGGAGCACGCAAGGAAACTAGTCAAGGAAATG
ACCTCAAGATGGTTTTGAATGCGTGAAGTCATGTCAAACTTTCgggagca
agaagaggaacagcGAGAATTTTTGctccaccgccctccccaggaccgga
cctccctttcccccccgcacGGCCGGTCCATCGCCATGACGGACATCTTC
GAGTCCTATGAAGACGAGTTCCGCGCGCTGGCGGGCGATTGTCAGAAGAA
GctctccaacctcctcacctaCGAGACGCATGGCGACAAGATACAGAGCC
TTCTCCGGCAAGCCTCCCCTCAGGTCACCCAGCTCGAGGGCCTGATCAAG
CAGATGAAGCTGGAGGTCCGTTCGCTGGACGCGGGCACGAAagccgccct
ctccgccaAAGTGCAGACCTACGAGAGGGTCTTGACCGGGGTCAAGGCCG
ACCTGGGCCGCGCgcgggaacgggaggagaaggacgcgttgctaggagcg
ggggggggcgtgtcGATGGTGCAGCGACAAAGATTGCTCGAGACGAGCGA
GAGGCTGGCGCACCAAAACCGGACTATTGACAACGCGCGGAAGGtgatgg
cggagacggagcaAGTCGGCATTCATATCGGAGAGGAGCTGGAATCGAAC
CGGGAAAAAATTCAGAGTATTCGAGGCAAGGTAGGTGAAGGGCAGGGTAT
GACGGAGCACGCAAGGAAACTAGTCAAGGAAATGACCTCAAGATGGTTTT
GAATGCGTGAAGTCATGTCAAACTTTCgggagcaagaagaggaacagcGA
GAATTTTTGctccaccgccctccccaggaccggacctccctttccccccc
gcacGGCCGGTCCATCGCCATGACGGACATCTTCGAGTCCTATGAAGACG
AGTTCCGCGCGCTGGCGGGCGATTGTCAGAAGAAGctctccaacctcctc
acctaCGAGACGCATGGCGACAAGATACAGAGCCTTCTCCGGCAAGCCTC
CCCTCAGGTCACCCAGCTCGAGGGCCTGATCAAGCAGATGAAGCTGGAGG
TCCGTTCGCTGGACGCGGGCACGAAagccgccctctccgccaAAGTGCAG
ACCTACGAGAGGGTCTTGACCGGGGTCAAGGCCGACCTGGGCCGCGCgcg
ggaacgggaggagaaggacgcgttgctaggagcgggggggggcgtgtcGA
TGGTGCAGCGACAAAGATTGCTCGAGACGAGCGAGAGGCTGGCGCACCAA
AACCGGACTATTGACAACGCGCGGAAGGtgatggcggagacggagcaAGT
CGGCATTCATATCGGAGAGGAGCTGGAATCGAACCGGGAAAAAATTCAGA
GTATTCGAGGCAAGGTAGGTGAAGGGCAGGGTATGACGGAGCACGCAAGG
AAACTAGTCAAGGAAATGACCTCAAGATGGTTTTGA

Synonyms

Publications