EWM28770.1, cds1895 (CDS) Nannochloropsis gaditana

Overview
NameEWM28770.1
Unique Namecds1895
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:423689..423745 +
Alignment locationCM002458.1:424416..424908 +
Alignment locationCM002458.1:425004..425065 +
Alignment locationCM002458.1:425210..425281 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28770.1
Productvesicle transport through interaction with t-snares 1a
Orig transcript idgnl|cribi|Naga_100002g121.4889.mrna
GeneSNR13
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:423689..423745 +
CM002458.1supercontigCM002458.1:424416..424908 +
CM002458.1supercontigCM002458.1:425004..425065 +
CM002458.1supercontigCM002458.1:425210..425281 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR007705Vesicle_trsprt_v-SNARE_N
IPR000727T_SNARE_dom
Homology
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|585111193|gb|EWM28770.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana])

HSP 1 Score: 463.381 bits (1191), Expect = 3.754e-165
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
Query:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSRWF 227
            MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSRWF
Sbjct:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSRWF 227          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|585111192|gb|EWM28769.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana])

HSP 1 Score: 404.445 bits (1038), Expect = 2.321e-141
Identity = 212/225 (94.22%), Postives = 217/225 (96.44%), Query Frame = 0
Query:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225
            MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKV E  G+T  AR+L+  ++ R
Sbjct:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRR 225          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|298705324|emb|CBJ49014.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 130.954 bits (328), Expect = 3.493e-34
Identity = 79/193 (40.93%), Postives = 115/193 (59.59%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSL-DAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG------AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225
            M+ IFE+Y++EF AL  D    +S+L TYET   K ++ L      V Q   L+KQM++EVRS  DA +K  L  K+ +Y++ L  ++ D  RA E++E++ LLG      A GG S  QR RLL+T++RL  Q+R ++++++ M E E   + I  EL  NREKI  +  KV +  GMT  AR+LV  M  R
Sbjct:    1 MSSIFEAYDEEFLALTQDIGNNISHLNTYETDAGKKRTQLTHIDALVGQAGDLLKQMEIEVRSTQDAASKKELQGKIASYKKTLQSLRGDYQRAVEKQEREGLLGGREAAFAQGGASQEQRDRLLQTTDRLDGQSRRLEDSKRTMMEIEDTAMEITTELGRNREKIGEVHDKVRDVSGMTTSARRLVHNMNRR 193          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|695387647|ref|XP_009518949.1| (hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae] >gi|348683846|gb|EGZ23661.1| hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae])

HSP 1 Score: 130.183 bits (326), Expect = 5.823e-34
Identity = 77/191 (40.31%), Postives = 116/191 (60.73%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225
            MT IF+ Y++E+RAL GD  KK+S + +YE   DK ++ +      +TQ   LI+QM+LEVRSLDA T+  LS KV  Y++ L  + AD  + RE+EE++ LLG   G   S   R R+   + ++      +  ARK +A+TE+V + IG+EL  NREKI++   KV   +G+ E AR+   +V  M++R
Sbjct:    1 MTTIFDGYDEEYRALTGDISKKISEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLLGDRDGNAASAEHRSRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGDELSRNREKIEATHAKV---KGVNEMARRGGNIVGRMSAR 188          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|566026588|gb|ETI49499.1| (hypothetical protein F443_06657 [Phytophthora parasitica P1569] >gi|567963891|gb|ETK89383.1| hypothetical protein L915_06531 [Phytophthora parasitica] >gi|567992599|gb|ETL42789.1| hypothetical protein L916_06472 [Phytophthora parasitica] >gi|568021878|gb|ETL95960.1| hypothetical protein L917_06339 [Phytophthora parasitica] >gi|568052269|gb|ETM49149.1| hypothetical protein L914_06445 [Phytophthora parasitica] >gi|570330273|gb|ETO78221.1| hypothetical protein F444_06728 [Phytophthora parasitica P1976] >gi|570954001|gb|ETP19258.1| hypothetical protein F441_06664 [Phytophthora parasitica CJ01A1] >gi|570988909|gb|ETP47204.1| hypothetical protein F442_06697 [Phytophthora parasitica P10297])

HSP 1 Score: 128.642 bits (322), Expect = 2.404e-33
Identity = 76/191 (39.79%), Postives = 114/191 (59.69%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225
            MT IF+ Y++E+R L  D  KKLS + +YE   DK ++ +      +TQ   LI+QM+LEVRSLDA T+  LS KV  Y++ L  + AD  + RE+EE++ L G   G   S   R R+   + ++      +  ARK +A+TE+V + IGEEL+ NREKI++   KV   +G+ E AR+   +V  M++R
Sbjct:    1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASAEHRNRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELDRNREKIKATHAKV---KGVNEMARRGGNIVGRMSAR 188          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|675166715|ref|XP_008892242.1| (hypothetical protein PPTG_02754 [Phytophthora parasitica INRA-310] >gi|568108414|gb|ETN23038.1| hypothetical protein PPTG_02754 [Phytophthora parasitica INRA-310])

HSP 1 Score: 128.642 bits (322), Expect = 2.705e-33
Identity = 73/188 (38.83%), Postives = 109/188 (57.98%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225
            MT IF+ Y++E+R L  D  KKLS + +YE   DK ++ +      +TQ   LI+QM+LEVRSLDA T+  LS KV  Y++ L  + AD  + RE+EE++ L G   G   S   R R+   + ++      +  ARK +A+TE+V + IGEEL+ NREKI++   KV +   M      +V  M++R
Sbjct:    1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASAEHRNRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELDRNREKIKATHAKVKDVNEMARRGGNIVGRMSAR 188          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|301114897|ref|XP_002999218.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111312|gb|EEY69364.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 126.331 bits (316), Expect = 1.770e-32
Identity = 76/191 (39.79%), Postives = 114/191 (59.69%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225
            MT IF+ Y++E+R L  D  KKLS + +YE   DK ++ +      +TQ   LI+QM+LEVRSLDA T+  LS KV  Y++ L  + AD  + RE+EE++ L G   G   S+  R R+   + ++      +  ARK +A+TE+V + IGEEL  NREKI++   KV   +G+ E AR+   +V  M++R
Sbjct:    1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASVEHRGRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELGRNREKIEATHAKV---KGVNEMARRGGNIVGRMSTR 188          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|635361663|emb|CCI49442.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 125.561 bits (314), Expect = 3.839e-32
Identity = 74/186 (39.78%), Postives = 104/186 (55.91%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225
            MT IF+ Y++E+RALA D  KK+S++ TYE   DK +S L      + Q   LI+QM+LE RSLD  T+  LS KV+ Y + L  +  D  + REREE+D + G     +  QR R+   +ER+      +D AR+ +AETE V + I  EL  NREKI +   KV     M      +V  M++R
Sbjct:    1 MTSIFDGYDEEYRALASDISKKISDVATYEQEPDKKKSSLLHIGDLLKQGNQLIQQMELEARSLDVATRRELSKKVEQYRKSLGSLNEDFKKIREREERDGVFGNRSDPNEDQRNRMELATERMRGSTDKLDAARRTVAETEDVALSITGELARNREKIHAAHTKVKSVNEMARQGASIVGRMSAR 186          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|953488334|emb|CEG47818.1| (vesicle transport through interaction with t-snares 1a [Plasmopara halstedii])

HSP 1 Score: 122.479 bits (306), Expect = 5.524e-31
Identity = 77/191 (40.31%), Postives = 113/191 (59.16%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMV--QRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225
            MT IF+ Y++E+R LA D  KKLS +  YE   DK +  +      +TQ   LI+QM+LEVRSLDA T+  LS KV  Y++ L  + AD  + RE+EE++ L G   G + +   R R+   + ++      +  ARK +A+TE+V + IGEEL  NREKIQS   KV   +G+ + AR+   +V  M++R
Sbjct:    1 MTTIFDGYDEEYRTLANDISKKLSEVACYEEQKDKKKVGIVHVGDLLTQASQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLLADHKKIREKEEREGLFGDRDGNATLAEHRGRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELGRNREKIQSTHAKV---KGVNDMARRGGNIVGRMSAR 188          
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|1214707281|gb|OWZ18705.1| (hypothetical protein PHMEG_0007154 [Phytophthora megakarya])

HSP 1 Score: 120.553 bits (301), Expect = 4.046e-30
Identity = 73/191 (38.22%), Postives = 111/191 (58.12%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225
            MT IF+ Y++E+R L  D  KKLS + +YE   DK ++ +      +TQ   LI+QM+LEVRSLD  T+  LS KV  Y++ L  + AD  + RE+EE++ L G   G   S   R R+   + ++      +  ARK +A+TE+V + I +EL  NREKI++   KV   +G+ E AR+   +V  M++R
Sbjct:    1 MTTIFDGYDEEYRTLTSDISKKLSEVASYEDQKDKKKASIIHVGDLLTQATQLIQQMELEVRSLDTATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASTEYRSRMAAATNKMKGTTDKLTAARKEIADTEEVALAISDELGRNREKIEATHSKV---KGVNEMARRGGNIVGRMSAR 188          
The following BLAST results are available for this feature:
BLAST of EWM28770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111193|gb|EWM28770.1|3.754e-165100.00vesicle transport through interaction with t-snare... [more]
gi|585111192|gb|EWM28769.1|2.321e-14194.22vesicle transport through interaction with t-snare... [more]
gi|298705324|emb|CBJ49014.1|3.493e-3440.93Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|695387647|ref|XP_009518949.1|5.823e-3440.31hypothetical protein PHYSODRAFT_295979 [Phytophtho... [more]
gi|566026588|gb|ETI49499.1|2.404e-3339.79hypothetical protein F443_06657 [Phytophthora para... [more]
gi|675166715|ref|XP_008892242.1|2.705e-3338.83hypothetical protein PPTG_02754 [Phytophthora para... [more]
gi|301114897|ref|XP_002999218.1|1.770e-3239.79conserved hypothetical protein [Phytophthora infes... [more]
gi|635361663|emb|CCI49442.1|3.839e-3239.78unnamed protein product [Albugo candida][more]
gi|953488334|emb|CEG47818.1|5.524e-3140.31vesicle transport through interaction with t-snare... [more]
gi|1214707281|gb|OWZ18705.1|4.046e-3038.22hypothetical protein PHMEG_0007154 [Phytophthora m... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1900rna1900Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications