rna1899, rna1899 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1899
Unique Name	rna1899
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1440
Alignment location	CM002458.1:423175..427272 +

Link to JBrowse

Properties


Property Name	Value
Product	vesicle transport through interaction with t-snares 1a
Orig transcript id	gnl\|cribi\|Naga_100002g121.4888.mrna
Orig protein id	gnl\|cribi\|Naga_100002g121.4888
Gene	SNR13
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:423175..427272 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SNR13	gene1815	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1899	rna1899-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28769.1	cds1894	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:423175..427272+
coding sequence from alignment at CM002458.1:423175..427272+

mRNA sequence

>rna1899 ID=rna1899|Name=rna1899|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp
TTGTCTTCCTTGAGGGCAGGTACCGGCAAAAGAGGAAGGCCCATTGTTCC
ACCGGCTGCAACCGCAGTGGCGTAGTACGTCGTGCGAGCACGACCGGTAG
AGGCGTGCCACACGGGCAATGCAAAAGGGCTGAGAGGTACCGCCCCTTGG
CATCTTTATGATTTACAGTTACTTAACCAGCTTTCACTCACAATCTTTTG
TACACGCACAGGCTTTGAGTTTGTGCTTTCGGAGGAAGGCGGGTGTCGAT
TAAAGGCTCTCTCACCCACGGACACCAACTCTAAATTTAAAGTACAATGG
CGCATGGTCTTCAAAATCGGCAGTCCCGACTCTCGCGTATATCATCGCGC
ACTGACACCGAAATCTTTGACGATGGCAGGGGGGAAAAGCGGCACACGAT
CTACTACATGAACATCGAGGTGGGGCGCAACAAGTACTATCTGCACAAGC
GGTACACGGAGTTTCTCATGCTTCACCAGAAACTTTGCGAGCAGCAATAC
CCGGAAATTGAGGACTTCGAATTCCCCAACAAAGTTTGGTTCAACAACTT
CTCCGAGGGGGTGATTGAGTACCGTCGTACACGTTTCGAGGCCTATCTTA
CTCTGCTTCTGGAGCTTGTGAACAAATACCCGCCTTTGCGCAAGGAGGTG
GAGAGTTTCCTGGGCGTTCCACAAGTGATTAATCCCCCGAAGCGGTACCC
TAAGACCCCTGTTCCGGGGCGAAAGGTAGTAGAGAAGCCTATTGGTCTCA
TGGATGATCCTTCCGACTTTGCAAGCGCGGCTGGCCGGGATTTGGGGGCG
AAAGCACCAACTGGCGCCGGCGTCTGCTCTAACTCGCAGCGATCCCTTTT
CCTGAGCCGGAAAAGATCTTCCGACGAGGGACTGGTAGAGCAAGGACGAG
GTGAATCACCGACCATAATAACGACAGGCAAGCGTGTAACATCACCAAGC
CCAGCTGAGAGCTCAGCCGCAGCGGCAGCTGCTAGGGCGTGTGGATACGC
CTCCACAACCACGATCTTGACTGTCCTCCTCATGTACATCGTTCTTGTCT
TCCTTCTGGCTTTGATAGCGGCATTGGATCCTTCAAATGCCAGACTGAGT
GCACTATTGATACTCGGCCTCTCGAGCGTGGCCTCCCTAGTGGTAATGCG
CGCTTTTCACGGCGCTGCCGCCCAGGACGCCAGAAGATTTAGTGGAAGTA
AGAAGTGAACCCCGTAGAGCGTGGAAGGGAGGAATGAAATGGAAATAGTG
ATGCATATTCATGTAGTGCATATTTGAGTGTTATACTCTCTAAATTGAAG
CGTACGTGATGAAAGGAACTGCATTATATGATATTCGTGTCACGTGTAGA
AGGAAAAAGAAGTTGAGTGCGTATTCATCTCAAACGGCCGCAATGCCTGT
GGCTCAACCAAATTAATCAGGAAAACATCACTCCAGTTCT

protein sequence of rna1899

>rna1899-protein ID=rna1899-protein|Name=rna1899|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDE
FRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEV
RSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSM
VQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQS
IRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYY
SSR

mRNA from alignment at CM002458.1:423175..427272+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1899 ID=rna1899|Name=rna1899|organism=Nannochloropsis gaditana|type=mRNA|length=4098bp|location=Sequence derived from alignment at CM002458.1:423175..427272+ (Nannochloropsis gaditana)
ACGAAATCTTTTGTTTATTACATTAAATCTATACACGATGTCCTACAGGT
TGGTTGGGACGCTTGAGAGGGAGATTGGAGACATTTGTTTTCAAGTCGTG
AAAGAAACGGAATCGAGACCCATGCAGTGTGCGATAAGGAGGACACAAGG
GCATCCCATAGAAAGACATGGCTAATTGGGTTCTCGTATTCCCTAATTGC
AGAGCAATGTGCCCAGGGATGGAGGATCCTAGCAGTGTAGTTATGGTCGT
GTGAGACATCGAACAGTTCGGAATGGGCCTGCAGGATCTGAAAGCGTTAT
CCTCATCCTATGCGCCTCCACGCGCGACCGCTCCTGATCGTGTATGATTT
CGAGCGCAAAAGCATTAAAGGCTTTTTGTCTGTGATATATAGTCTTATCT
GACGTATTGGCGACGCGGGGATAGAATAATGTCGTGGGTGTTCCTCTCAC
TCATTGCGAATTGCCCCACCTAGAAAAAGTCAAGAAAAGGCCATCATGCA
TAAGCCATCCCAGTATGCGTGAAGTCATGTCAAACTTTCgggagcaagaa
gaggaacagcGAGAATTTTTGGTATTTGAAGGGGGTGGCAGGAAAAACGA
TtgcggggaggcagggaggacaggagggcaagCCTGGGCATGACCTGCGT
GCCATACCTCTCGGGCTACAAGGCTGGAGGGGTTTGTGGTTCCTTTTGCG
CGGCTGGCAGGGGATGAATAAGAGCATAGTCACGTTCGCATGTCGTGCAC
CTTTCGACTGTGGTGCAAGGGCAAGCGTGGGGTGGCAAAGAGTCCAAGTC
CTTATTTTTGAATGAAACATGCGCTAGTCTGCTGGCCTATGGATGTGCCT
GTCCACCCTGGCGATGCTTTTCAGGCATGCAACGCTGATCATAGCGTTGC
TATCATTTCGAAGAGTTGGGGCTAGAAGAGTGTCTTGACATGACTATTTG
CCATTTGAGGCTCGAGGCTGTCCATTTCGCCCGCGCAGCTGGCACGTCCA
GGCTGACACGTGTCTCGCCTGGACTCTGACAGGGCCGCACATGACGCTCG
GGTCCTTGTGTGTGTAATCTCGATCTGATTTCATTGTGTATTGAGGCTTG
TATTGGGCTCGGTTGTCGTGCCTCTCTTTGTAGCCCTGACTTCCTCTCCT
AGAGCCTGAGAGCACGCCAGCGCCAAGCGTGTAGTATCAGGTTCAGGCCC
TGTCTCATcacccgccttgtcctctaTATTTTTCTCCAcagctccaccgc
cctccccaggaccggacctccctttcccccccgcacGGCCGGTCCATCGC
CATGACGGACATCTTCGAGTCCTATGAAGACGAGTTCCGCGCGCTGGCGG
GCGATTGTCAGAAGAAGctctccaacctcctcacctaCGAGACGCATGGC
GACAAGATACAGAGCCTTCTCCGGCAAGCCTCCCCTCAGGTCACCCAGCT
CGAGGGCCTGATCAAGCAGATGAAGCTGGAGGTCCGTTCGCTGGACGCGG
GCACGAAagccgccctctccgccaAAGTGCAGACCTACGAGAGGGTCTTG
ACCGGGGTCAAGGCCGACCTGGGCCGCGCgcgggaacgggaggagaagga
cgcgttgctaggagcgggggggggcgtgtcGATGGTGCAGCGACAAAGAT
TGCTCGAGACGAGCGAGAGGCTGGCGCACCAAAACCGGACTATTGACAAC
GCGCGGAAGGtgatggcggagacggagcaAGTCGGTacgtgggagaggaa
taGGGGGCCGCATGCAATCCGAGATGGGCGAGGAGTCTTTGGCACGTCCT
GACCCTTGCATGCACCCACGCGCTTGCAGGCATTCATATCGGAGAGGAGC
TGGAATCGAACCGGGAAAAAATTCAGAGTATTCGAGGCAAGGTACGTTAA
AGATCTCGGCCAAACAGCCTTTCAGGAGGCTATGAGAAGGGGGGTTTGGA
GCCTTTGTACTGTTTGTGTAATATTCAGATGGTGTTTTCGTTGCGATCTG
CTTCTCATGCTGCCTTATCGCTTCACATTTTCTAGGTAGGTGAAGGGCAG
GGTATGACGGAGCACGCAAGGAAACTAGTCAAGGAAATGACCTCAAGATG
GTTTTGAAGGATAGTGCTCGTGATGCGGAAAAATGAGTCGAGGCATCGAT
AAATCGTTGATTCTGgcgttttcttttcccaatGCGTACGCGAACACCAT
TTCTCCACATGGCTTATGAGGACGTACCTCGAGCACCTCCAGGCGTCTTG
TAGCGTGTCGCCGGGGTGCTTTTGATCTCTCCTCATTTGCAATTCTTTGC
TCACATCTTCTATTTGCAGGTTTCAGAGGTTGGCGGCTTAACCAATACAG
CCCGGCGCTTGATATCCAGCATTAGCCGCAGGGAGACCCAACAAAAGCTC
ATGTTGTGGGGTGTGGCTGCCTCGTTGCTTATTGCTATTATCCTAATAAT
TTACTATTCCTCTCGGTAGGATGCAGTGTGCGATGGGCCATGAGAGCCAA
AAATAAGCGTTGGTTTCATGAGTTGCTTGTTTTGTCGCCATTTCCTTTTG
AGCTTGCGTCGCTCATCTTTGATATATCCTGGCCAGGCAGGAGCTTAAAG
AAAACTAAAAGCTCGAGACACGTGATGGATTTACGCAGGTAAAATTTTCG
ACATAAAACTGCAGCTTATACAGGCACGTTTGACTGGCATATCCGTGAGT
ATTCAGTGCCCTTTCATCATAACATTGTTGAGCGTCAAATGCGGGCTTCT
TGCGGTAGGGATAACCTCCTGACCCCTTCTAATAATTTTGACCTCGAAGC
GATTGAAGACTCTTAAATCGCTCGAACTTCACACCCCTTTACTTTTTTGT
GGTCTATCAAGAGAAAATGCGGGAAGAATCTTGTCGCCTACTGCGTGGTG
CGCCTTCATCAGTCGTCCAAACTCAGGACGCAGACGGTTCCAAGTTGAGT
TGAAGCGATGAGAGAGCGGATGACCCCCGCATGCCTGGAAGACCTAAGCC
GTCATCTCCGTCACCTTATCCCACCCTCACCCTTTCACATGCAcgcagga
gaaaaggaacCACAAGGTACCATGAAAAGGAGACGAAAGAGtacttctcc
ttcgtctggTTCCTCTACCAAGTTTCGACAAAAGAgctttcccatcctca
tGGGCGATGCGCTGAAGCCTGCCACGCTCCTCCGGATGCCAGAGGAAGAC
ATGCCCTTGCCCCCGCACGACGTCCCGATCTTCTTTTATAAAGAGGAAGT
GATCATAAGGGACGATGAGGGCAGTGACAGTGAGGGCATGAAAGCCGTGG
GACGGGGCTTGGTGAAGCCAGGCCAAGCACGTAAGCGGCGTTTTCAGCCT
CGACCCACCTTCCGATGGgtcctggaggccctggacaTCAAACTTCACGG
GAATACGAATAAAATCCAAGCCAAAGACGGATCCGCTTATTTCATTCTTC
GTGTAGACGAATCCACCCGGGAGACGCGGCTCGTGCCACTCGTGGAGACG
GTCATGTTGAGGCAGACGGCGCCGGACGATCGGGGGGATGAGGAACGCTC
CCAGTCGAGGCGACGGGCAGCCGAGGAGTACATCGAGCATGGGAACCGTT
TCGAGCAGCGCGCGGAGGCATGGGCCAAACGGTATGGGCGGAGACTGGTG
GATGTGTtgggtgtggaggaggaagagggggaggaggaggggcatggagg
ggcgagggccaggaggatggggcgaggtgggaggagagcctgGCAACGGA
CGCACCGGGTGGATGAGGACgtagaggcgggggagatgGACCACAACCCA
TCCACGAAGGTGGGAACGAGCTACCAGGACGTGTTCGCcttgatggaggg
ggaggagggggccgggggggccgacggaggggggaaagggaagcgctGGC
GGTCGCGTTTGAGACGGTGGACACGGGAGAGGTCCCGGACGCAGCAGAGG
AAGGCTTCGGCGCTCCCGAGTACGGCGACGAGTACTGCCAGCCTGAGCAC
CTGGTGGCGGCgagagaggcggaagaggaggagggggcggagctgcttga
ggaggaggagagtagTTTtgaggggggcaggagcagcgagagcgagga

Coding sequence (CDS) from alignment at CM002458.1:423175..427272+

>rna1899 ID=rna1899|Name=rna1899|organism=Nannochloropsis gaditana|type=CDS|length=3048bp|location=Sequence derived from alignment at CM002458.1:423175..427272+ (Nannochloropsis gaditana)
ATGCGTGAAGTCATGTCAAACTTTCgggagcaagaagaggaacagcGAGA
ATTTTTGctccaccgccctccccaggaccggacctccctttcccccccgc
acGGCCGGTCCATCGCCATGACGGACATCTTCGAGTCCTATGAAGACGAG
TTCCGCGCGCTGGCGGGCGATTGTCAGAAGAAGctctccaacctcctcac
ctaCGAGACGCATGGCGACAAGATACAGAGCCTTCTCCGGCAAGCCTCCC
CTCAGGTCACCCAGCTCGAGGGCCTGATCAAGCAGATGAAGCTGGAGGTC
CGTTCGCTGGACGCGGGCACGAAagccgccctctccgccaAAGTGCAGAC
CTACGAGAGGGTCTTGACCGGGGTCAAGGCCGACCTGGGCCGCGCgcggg
aacgggaggagaaggacgcgttgctaggagcgggggggggcgtgtcGATG
GTGCAGCGACAAAGATTGCTCGAGACGAGCGAGAGGCTGGCGCACCAAAA
CCGGACTATTGACAACGCGCGGAAGGtgatggcggagacggagcaAGTCG
GCATTCATATCGGAGAGGAGCTGGAATCGAACCGGGAAAAAATTCAGAGT
ATTCGAGGCAAGGTTTCAGAGGTTGGCGGCTTAACCAATACAGCCCGGCG
CTTGATATCCAGCATTAGCCGCAGGGAGACCCAACAAAAGCTCATGTTGT
GGGGTGTGGCTGCCTCGTTGCTTATTGCTATTATCCTAATAATTTACTAT
TCCTCTCGGTAGATGCGTGAAGTCATGTCAAACTTTCgggagcaagaaga
ggaacagcGAGAATTTTTGctccaccgccctccccaggaccggacctccc
tttcccccccgcacGGCCGGTCCATCGCCATGACGGACATCTTCGAGTCC
TATGAAGACGAGTTCCGCGCGCTGGCGGGCGATTGTCAGAAGAAGctctc
caacctcctcacctaCGAGACGCATGGCGACAAGATACAGAGCCTTCTCC
GGCAAGCCTCCCCTCAGGTCACCCAGCTCGAGGGCCTGATCAAGCAGATG
AAGCTGGAGGTCCGTTCGCTGGACGCGGGCACGAAagccgccctctccgc
caAAGTGCAGACCTACGAGAGGGTCTTGACCGGGGTCAAGGCCGACCTGG
GCCGCGCgcgggaacgggaggagaaggacgcgttgctaggagcggggggg
ggcgtgtcGATGGTGCAGCGACAAAGATTGCTCGAGACGAGCGAGAGGCT
GGCGCACCAAAACCGGACTATTGACAACGCGCGGAAGGtgatggcggaga
cggagcaAGTCGGCATTCATATCGGAGAGGAGCTGGAATCGAACCGGGAA
AAAATTCAGAGTATTCGAGGCAAGGTTTCAGAGGTTGGCGGCTTAACCAA
TACAGCCCGGCGCTTGATATCCAGCATTAGCCGCAGGGAGACCCAACAAA
AGCTCATGTTGTGGGGTGTGGCTGCCTCGTTGCTTATTGCTATTATCCTA
ATAATTTACTATTCCTCTCGGTAGATGCGTGAAGTCATGTCAAACTTTCg
ggagcaagaagaggaacagcGAGAATTTTTGctccaccgccctccccagg
accggacctccctttcccccccgcacGGCCGGTCCATCGCCATGACGGAC
ATCTTCGAGTCCTATGAAGACGAGTTCCGCGCGCTGGCGGGCGATTGTCA
GAAGAAGctctccaacctcctcacctaCGAGACGCATGGCGACAAGATAC
AGAGCCTTCTCCGGCAAGCCTCCCCTCAGGTCACCCAGCTCGAGGGCCTG
ATCAAGCAGATGAAGCTGGAGGTCCGTTCGCTGGACGCGGGCACGAAagc
cgccctctccgccaAAGTGCAGACCTACGAGAGGGTCTTGACCGGGGTCA
AGGCCGACCTGGGCCGCGCgcgggaacgggaggagaaggacgcgttgcta
ggagcgggggggggcgtgtcGATGGTGCAGCGACAAAGATTGCTCGAGAC
GAGCGAGAGGCTGGCGCACCAAAACCGGACTATTGACAACGCGCGGAAGG
tgatggcggagacggagcaAGTCGGCATTCATATCGGAGAGGAGCTGGAA
TCGAACCGGGAAAAAATTCAGAGTATTCGAGGCAAGGTTTCAGAGGTTGG
CGGCTTAACCAATACAGCCCGGCGCTTGATATCCAGCATTAGCCGCAGGG
AGACCCAACAAAAGCTCATGTTGTGGGGTGTGGCTGCCTCGTTGCTTATT
GCTATTATCCTAATAATTTACTATTCCTCTCGGTAGATGCGTGAAGTCAT
GTCAAACTTTCgggagcaagaagaggaacagcGAGAATTTTTGctccacc
gccctccccaggaccggacctccctttcccccccgcacGGCCGGTCCATC
GCCATGACGGACATCTTCGAGTCCTATGAAGACGAGTTCCGCGCGCTGGC
GGGCGATTGTCAGAAGAAGctctccaacctcctcacctaCGAGACGCATG
GCGACAAGATACAGAGCCTTCTCCGGCAAGCCTCCCCTCAGGTCACCCAG
CTCGAGGGCCTGATCAAGCAGATGAAGCTGGAGGTCCGTTCGCTGGACGC
GGGCACGAAagccgccctctccgccaAAGTGCAGACCTACGAGAGGGTCT
TGACCGGGGTCAAGGCCGACCTGGGCCGCGCgcgggaacgggaggagaag
gacgcgttgctaggagcgggggggggcgtgtcGATGGTGCAGCGACAAAG
ATTGCTCGAGACGAGCGAGAGGCTGGCGCACCAAAACCGGACTATTGACA
ACGCGCGGAAGGtgatggcggagacggagcaAGTCGGCATTCATATCGGA
GAGGAGCTGGAATCGAACCGGGAAAAAATTCAGAGTATTCGAGGCAAGGT
TTCAGAGGTTGGCGGCTTAACCAATACAGCCCGGCGCTTGATATCCAGCA
TTAGCCGCAGGGAGACCCAACAAAAGCTCATGTTGTGGGGTGTGGCTGCC
TCGTTGCTTATTGCTATTATCCTAATAATTTACTATTCCTCTCGGTAG

Synonyms

Publications