EWM28769.1, cds1894 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|585111192|gb|EWM28769.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana]) HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0 Query: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYSSR 253 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYSSR Sbjct: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYSSR 253
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|585111193|gb|EWM28770.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana]) HSP 1 Score: 404.06 bits (1037), Expect = 4.010e-141 Identity = 212/225 (94.22%), Postives = 217/225 (96.44%), Query Frame = 0 Query: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRR 225 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKV E G+T AR+L+ ++ R Sbjct: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|298705324|emb|CBJ49014.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 162.54 bits (410), Expect = 4.788e-46 Identity = 88/219 (40.18%), Postives = 137/219 (62.56%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSL-DAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG------AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYS 251 M+ IFE+Y++EF AL D +S+L TYET K ++ L V Q L+KQM++EVRS DA +K L K+ +Y++ L ++ D RA E++E++ LLG A GG S QR RLL+T++RL Q+R ++++++ M E E + I EL NREKI + KV +V G+T +ARRL+ +++RRE QQ+ +++G+ L+I I +YY+ Sbjct: 1 MSSIFEAYDEEFLALTQDIGNNISHLNTYETDAGKKRTQLTHIDALVGQAGDLLKQMEIEVRSTQDAASKKELQGKIASYKKTLQSLRGDYQRAVEKQEREGLLGGREAAFAQGGASQEQRDRLLQTTDRLDGQSRRLEDSKRTMMEIEDTAMEITTELGRNREKIGEVHDKVRDVSGMTTSARRLVHNMNRREVQQRCIMYGIGLVLVIGAIAAVYYT 219
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|695387647|ref|XP_009518949.1| (hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae] >gi|348683846|gb|EGZ23661.1| hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae]) HSP 1 Score: 149.443 bits (376), Expect = 5.770e-41 Identity = 83/213 (38.97%), Postives = 128/213 (60.09%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYY 250 MT IF+ Y++E+RAL GD KK+S + +YE DK ++ + +TQ LI+QM+LEVRSLDA T+ LS KV Y++ L + AD + RE+EE++ LLG G S R R+ + ++ + ARK +A+TE+V + IG+EL NREKI++ KV V + ++ +S R+ +Q+L L A ++IAI+L+IY+ Sbjct: 1 MTTIFDGYDEEYRALTGDISKKISEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLLGDRDGNAASAEHRSRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGDELSRNREKIEATHAKVKGVNEMARRGGNIVGRMSARDKRQRLALSIAAGFIVIAILLLIYF 213
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|635361663|emb|CCI49442.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 143.28 bits (360), Expect = 1.211e-38 Identity = 82/211 (38.86%), Postives = 120/211 (56.87%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYY 250 MT IF+ Y++E+RALA D KK+S++ TYE DK +S L + Q LI+QM+LE RSLD T+ LS KV+ Y + L + D + REREE+D + G + QR R+ +ER+ +D AR+ +AETE V + I EL NREKI + KV V + ++ +S R+ +QK L A + +AII++IY+ Sbjct: 1 MTSIFDGYDEEYRALASDISKKISDVATYEQEPDKKKSSLLHIGDLLKQGNQLIQQMELEARSLDVATRRELSKKVEQYRKSLGSLNEDFKKIREREERDGVFGNRSDPNEDQRNRMELATERMRGSTDKLDAARRTVAETEDVALSITGELARNREKIHAAHTKVKSVNEMARQGASIVGRMSARDRRQKSALMIAAGLIGVAIIVVIYF 211
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|673031980|ref|XP_008869951.1| (hypothetical protein H310_06601 [Aphanomyces invadans] >gi|574473951|gb|ETW00953.1| hypothetical protein H310_06601 [Aphanomyces invadans]) HSP 1 Score: 142.124 bits (357), Expect = 2.442e-38 Identity = 79/210 (37.62%), Postives = 125/210 (59.52%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249 MT IF+ Y++E+++LA K+S + +YE DK ++ + AS +TQ LI+QM LEVRSLDA TK LS KV Y++ L + DL + +EEK+ L G+ R R+ +++L I A + + ETE+V I I EEL NREKIQ+ KV V + + R++ +S R+ +QKL+L+GV +++AI+++++ Sbjct: 1 MTTIFDGYDEEYKSLAQSVSAKISEISSYEEEPDKKRTAITHASDLLTQASQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEEKEGLFGSAEA-----RSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKSVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAIVIVLF 205
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|669170807|ref|XP_008620752.1| (hypothetical protein SDRG_16326 [Saprolegnia diclina VS20] >gi|530727568|gb|EQC25810.1| hypothetical protein SDRG_16326 [Saprolegnia diclina VS20]) HSP 1 Score: 140.969 bits (354), Expect = 8.382e-38 Identity = 78/210 (37.14%), Postives = 124/210 (59.05%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249 MT IF+ Y++E+++LA K+S + +YE DK ++ + +TQ LI+QM LEVRSLDA TK LS KV Y++ L + DL R RE+EE++ L G+ R R+ +++L I A + + ETE+ I I EEL NREKI+S KV V + R+++ +S R+ +QKL+L+GV +++AI+++++ Sbjct: 1 MTTIFDGYDEEYKSLAQSISVKISEISSYEDAPDKKRTAITHVGDLITQATQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKRIREKEEENGLFGSAEA-----RARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIESTHNKVKSVNDMARAGGRILNRMSARDKRQKLILYGVMGFMILAILIVLF 205
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|1173950826|gb|OQR98767.1| (hypothetical protein THRCLA_06677 [Thraustotheca clavata]) HSP 1 Score: 139.813 bits (351), Expect = 1.960e-37 Identity = 76/210 (36.19%), Postives = 123/210 (58.57%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249 MT IF+ Y+DE+++L K+S++ +YE DK ++ + +TQ LI+QM LEVRSLDA TK LS KV+ Y + L + DL R RE+EE++ L G+ R R+ +++L I A + + ETE+ I I EEL NREKI++ K+ V + R++ +S R+ +QKL+L+GV +++AI+++++ Sbjct: 1 MTTIFDGYDDEYKSLTQSISTKISDISSYEDAPDKKRTAITHVGDLITQATQLIQQMDLEVRSLDAATKRELSKKVEQYRKSLKSLADDLKRIREKEEENGLFGSAEA-----RARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIEATHAKIKSVNDMARAGGRILGRMSARDKRQKLILYGVMGFMILAILIVLF 205
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|698788818|ref|XP_009827441.1| (hypothetical protein H257_04567 [Aphanomyces astaci] >gi|574117288|gb|ETV82770.1| hypothetical protein H257_04567 [Aphanomyces astaci]) HSP 1 Score: 139.043 bits (349), Expect = 5.294e-37 Identity = 78/210 (37.14%), Postives = 126/210 (60.00%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249 MT IF+ Y++E+++LA K+S + +YE DK ++ + A+ +TQ LI+QM+LEVRSLDA TK LS KV Y++ L + DL + +E+K+ L G S R R+ +++L I A + + ETE+V I I EEL NREKIQ+ KV V + + R++ +S R+ +QKL+L+GV +++AI+++++ Sbjct: 1 MTTIFDGYDEEYKSLAQSVSSKISEIASYEEEPDKRRTAITHATDLLTQASQLIQQMELEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEDKEGLFG-----SAEARSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKGVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAILIVLF 205
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|325180365|emb|CCA14767.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 135.576 bits (340), Expect = 1.286e-35 Identity = 83/216 (38.43%), Postives = 121/216 (56.02%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYE-----THGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYY 250 MT IF+ Y++E+RALA D KK+S++ TYE T K +S L + Q LI+QM+LE RSLDA T+ LS KV+ Y + L + D R REREE+D + + QR R+ +E++ T+D AR+ +AETE V + I EL NR+KI S KV V + ++ +S R+ +QK L A + IAI+++IY+ Sbjct: 1 MTSIFDGYDEEYRALASDISKKISDVATYEQELVGTVIAKKKSSLMHIGDLLKQGNQLIQQMELEARSLDAATRRELSKKVEQYRKSLGSLNDDFKRIREREERDGVFRDRSDPNEDQRNRMELATEKMRGSTDTLDAARRTIAETEDVALSITGELARNRDKIHSAHTKVKSVNNMARQGASIVGRMSARDRRQKSALMIAAGLIGIAIVVVIYF 216 The following BLAST results are available for this feature:
BLAST of EWM28769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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