EWM28769.1, cds1894 (CDS) Nannochloropsis gaditana

Overview
NameEWM28769.1
Unique Namecds1894
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:423689..423745 +
Alignment locationCM002458.1:424416..424908 +
Alignment locationCM002458.1:425004..425065 +
Alignment locationCM002458.1:425494..425643 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28769.1
Productvesicle transport through interaction with t-snares 1a
Orig transcript idgnl|cribi|Naga_100002g121.4888.mrna
GeneSNR13
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:423689..423745 +
CM002458.1supercontigCM002458.1:424416..424908 +
CM002458.1supercontigCM002458.1:425004..425065 +
CM002458.1supercontigCM002458.1:425494..425643 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR007705Vesicle_trsprt_v-SNARE_N
Homology
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|585111192|gb|EWM28769.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana])

HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYSSR 253
            MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYSSR
Sbjct:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYSSR 253          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|585111193|gb|EWM28770.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana])

HSP 1 Score: 404.06 bits (1037), Expect = 4.010e-141
Identity = 212/225 (94.22%), Postives = 217/225 (96.44%), Query Frame = 0
Query:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRR 225
            MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKV E  G+T  AR+L+  ++ R
Sbjct:    1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|298705324|emb|CBJ49014.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 162.54 bits (410), Expect = 4.788e-46
Identity = 88/219 (40.18%), Postives = 137/219 (62.56%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSL-DAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG------AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYS 251
            M+ IFE+Y++EF AL  D    +S+L TYET   K ++ L      V Q   L+KQM++EVRS  DA +K  L  K+ +Y++ L  ++ D  RA E++E++ LLG      A GG S  QR RLL+T++RL  Q+R ++++++ M E E   + I  EL  NREKI  +  KV +V G+T +ARRL+ +++RRE QQ+ +++G+   L+I  I  +YY+
Sbjct:    1 MSSIFEAYDEEFLALTQDIGNNISHLNTYETDAGKKRTQLTHIDALVGQAGDLLKQMEIEVRSTQDAASKKELQGKIASYKKTLQSLRGDYQRAVEKQEREGLLGGREAAFAQGGASQEQRDRLLQTTDRLDGQSRRLEDSKRTMMEIEDTAMEITTELGRNREKIGEVHDKVRDVSGMTTSARRLVHNMNRREVQQRCIMYGIGLVLVIGAIAAVYYT 219          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|695387647|ref|XP_009518949.1| (hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae] >gi|348683846|gb|EGZ23661.1| hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae])

HSP 1 Score: 149.443 bits (376), Expect = 5.770e-41
Identity = 83/213 (38.97%), Postives = 128/213 (60.09%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYY 250
            MT IF+ Y++E+RAL GD  KK+S + +YE   DK ++ +      +TQ   LI+QM+LEVRSLDA T+  LS KV  Y++ L  + AD  + RE+EE++ LLG   G   S   R R+   + ++      +  ARK +A+TE+V + IG+EL  NREKI++   KV  V  +      ++  +S R+ +Q+L L   A  ++IAI+L+IY+
Sbjct:    1 MTTIFDGYDEEYRALTGDISKKISEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLLGDRDGNAASAEHRSRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGDELSRNREKIEATHAKVKGVNEMARRGGNIVGRMSARDKRQRLALSIAAGFIVIAILLLIYF 213          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|635361663|emb|CCI49442.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-38
Identity = 82/211 (38.86%), Postives = 120/211 (56.87%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYY 250
            MT IF+ Y++E+RALA D  KK+S++ TYE   DK +S L      + Q   LI+QM+LE RSLD  T+  LS KV+ Y + L  +  D  + REREE+D + G     +  QR R+   +ER+      +D AR+ +AETE V + I  EL  NREKI +   KV  V  +      ++  +S R+ +QK  L   A  + +AII++IY+
Sbjct:    1 MTSIFDGYDEEYRALASDISKKISDVATYEQEPDKKKSSLLHIGDLLKQGNQLIQQMELEARSLDVATRRELSKKVEQYRKSLGSLNEDFKKIREREERDGVFGNRSDPNEDQRNRMELATERMRGSTDKLDAARRTVAETEDVALSITGELARNREKIHAAHTKVKSVNEMARQGASIVGRMSARDRRQKSALMIAAGLIGVAIIVVIYF 211          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|673031980|ref|XP_008869951.1| (hypothetical protein H310_06601 [Aphanomyces invadans] >gi|574473951|gb|ETW00953.1| hypothetical protein H310_06601 [Aphanomyces invadans])

HSP 1 Score: 142.124 bits (357), Expect = 2.442e-38
Identity = 79/210 (37.62%), Postives = 125/210 (59.52%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249
            MT IF+ Y++E+++LA     K+S + +YE   DK ++ +  AS  +TQ   LI+QM LEVRSLDA TK  LS KV  Y++ L  +  DL   + +EEK+ L G+        R R+   +++L      I  A + + ETE+V I I EEL  NREKIQ+   KV  V  +  +  R++  +S R+ +QKL+L+GV   +++AI+++++
Sbjct:    1 MTTIFDGYDEEYKSLAQSVSAKISEISSYEEEPDKKRTAITHASDLLTQASQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEEKEGLFGSAEA-----RSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKSVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAIVIVLF 205          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|669170807|ref|XP_008620752.1| (hypothetical protein SDRG_16326 [Saprolegnia diclina VS20] >gi|530727568|gb|EQC25810.1| hypothetical protein SDRG_16326 [Saprolegnia diclina VS20])

HSP 1 Score: 140.969 bits (354), Expect = 8.382e-38
Identity = 78/210 (37.14%), Postives = 124/210 (59.05%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249
            MT IF+ Y++E+++LA     K+S + +YE   DK ++ +      +TQ   LI+QM LEVRSLDA TK  LS KV  Y++ L  +  DL R RE+EE++ L G+        R R+   +++L      I  A + + ETE+  I I EEL  NREKI+S   KV  V  +     R+++ +S R+ +QKL+L+GV   +++AI+++++
Sbjct:    1 MTTIFDGYDEEYKSLAQSISVKISEISSYEDAPDKKRTAITHVGDLITQATQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKRIREKEEENGLFGSAEA-----RARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIESTHNKVKSVNDMARAGGRILNRMSARDKRQKLILYGVMGFMILAILIVLF 205          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|1173950826|gb|OQR98767.1| (hypothetical protein THRCLA_06677 [Thraustotheca clavata])

HSP 1 Score: 139.813 bits (351), Expect = 1.960e-37
Identity = 76/210 (36.19%), Postives = 123/210 (58.57%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249
            MT IF+ Y+DE+++L      K+S++ +YE   DK ++ +      +TQ   LI+QM LEVRSLDA TK  LS KV+ Y + L  +  DL R RE+EE++ L G+        R R+   +++L      I  A + + ETE+  I I EEL  NREKI++   K+  V  +     R++  +S R+ +QKL+L+GV   +++AI+++++
Sbjct:    1 MTTIFDGYDDEYKSLTQSISTKISDISSYEDAPDKKRTAITHVGDLITQATQLIQQMDLEVRSLDAATKRELSKKVEQYRKSLKSLADDLKRIREKEEENGLFGSAEA-----RARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIEATHAKIKSVNDMARAGGRILGRMSARDKRQKLILYGVMGFMILAILIVLF 205          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|698788818|ref|XP_009827441.1| (hypothetical protein H257_04567 [Aphanomyces astaci] >gi|574117288|gb|ETV82770.1| hypothetical protein H257_04567 [Aphanomyces astaci])

HSP 1 Score: 139.043 bits (349), Expect = 5.294e-37
Identity = 78/210 (37.14%), Postives = 126/210 (60.00%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIY 249
            MT IF+ Y++E+++LA     K+S + +YE   DK ++ +  A+  +TQ   LI+QM+LEVRSLDA TK  LS KV  Y++ L  +  DL   + +E+K+ L G     S   R R+   +++L      I  A + + ETE+V I I EEL  NREKIQ+   KV  V  +  +  R++  +S R+ +QKL+L+GV   +++AI+++++
Sbjct:    1 MTTIFDGYDEEYKSLAQSVSSKISEIASYEEEPDKRRTAITHATDLLTQASQLIQQMELEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEDKEGLFG-----SAEARSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKGVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAILIVLF 205          
BLAST of EWM28769.1 vs. NCBI_GenBank
Match: gi|325180365|emb|CCA14767.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 135.576 bits (340), Expect = 1.286e-35
Identity = 83/216 (38.43%), Postives = 121/216 (56.02%), Query Frame = 0
Query:   40 MTDIFESYEDEFRALAGDCQKKLSNLLTYE-----THGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYY 250
            MT IF+ Y++E+RALA D  KK+S++ TYE     T   K +S L      + Q   LI+QM+LE RSLDA T+  LS KV+ Y + L  +  D  R REREE+D +       +  QR R+   +E++     T+D AR+ +AETE V + I  EL  NR+KI S   KV  V  +      ++  +S R+ +QK  L   A  + IAI+++IY+
Sbjct:    1 MTSIFDGYDEEYRALASDISKKISDVATYEQELVGTVIAKKKSSLMHIGDLLKQGNQLIQQMELEARSLDAATRRELSKKVEQYRKSLGSLNDDFKRIREREERDGVFRDRSDPNEDQRNRMELATEKMRGSTDTLDAARRTIAETEDVALSITGELARNRDKIHSAHTKVKSVNNMARQGASIVGRMSARDRRQKSALMIAAGLIGIAIVVVIYF 216          
The following BLAST results are available for this feature:
BLAST of EWM28769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111192|gb|EWM28769.1|0.000e+0100.00vesicle transport through interaction with t-snare... [more]
gi|585111193|gb|EWM28770.1|4.010e-14194.22vesicle transport through interaction with t-snare... [more]
gi|298705324|emb|CBJ49014.1|4.788e-4640.18Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|695387647|ref|XP_009518949.1|5.770e-4138.97hypothetical protein PHYSODRAFT_295979 [Phytophtho... [more]
gi|635361663|emb|CCI49442.1|1.211e-3838.86unnamed protein product [Albugo candida][more]
gi|673031980|ref|XP_008869951.1|2.442e-3837.62hypothetical protein H310_06601 [Aphanomyces invad... [more]
gi|669170807|ref|XP_008620752.1|8.382e-3837.14hypothetical protein SDRG_16326 [Saprolegnia dicli... [more]
gi|1173950826|gb|OQR98767.1|1.960e-3736.19hypothetical protein THRCLA_06677 [Thraustotheca c... [more]
gi|698788818|ref|XP_009827441.1|5.294e-3737.14hypothetical protein H257_04567 [Aphanomyces astac... [more]
gi|325180365|emb|CCA14767.1|1.286e-3538.43conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1899rna1899Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications