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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100556g1.7614.mrna |
| Orig protein id | gnl|cribi|Naga_100556g1.7614 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1283821..1286920 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1700 ID=rna1700|Name=rna1700|organism=Nannochloropsis gaditana|type=mRNA|length=3021bp
AACTGAAACAAAAACAACACATAAGTATATCTTTAAGAAAGGCGGAAAAT
AAATGGCAAGTTGAAGCCTCGACGCGCGAGACTGCCGCAACCATCCCATC
TTGCCCTGCAAGAAAAGAACCACTTCCCAAGCACAAACTGGACTGACGAG
CAGTTCTTCATCATCATTTCTATCAAGACGTAGTGTTGAATGCTGCGGAA
AGTCGATTTAGTGGTCAAGAGCAAATGTTTAACCAAAGATGCATGGCTTA
GTGCCCCACTGAACACGACCCCCAACATGTCGCACAGGTCCTCTTACCCC
AAATCCTTTGGGTTCGGAAGGCCACGATACCTTTGCACCACCACCTTACG
GAGGGGGTTTGGCAAAGTCTCACTTTTCTACTGGACTTACTATCCATCCC
CTCACAGCCGGCGTAAACCATGGTCTCCCCTGACATCCGTCAACGCAAAC
CGGGCCTTGCGGCATCTGAGGCGGACGACGTGGTCGTGGACGATGGAGAG
AGCGAAGAGGAGGTGGAGTACGAAGACGAGCCAGACGAACAGGAGATGAG
TGCGTTGGATTATTTGCACTCACAGGGATTATCCTTGAAGTCACTGAAAG
ATCCTTCCAAGGCCAAGACGGGAGCCACATGTCGTGCCGAGGGAAGCAGC
AGGGACAAGGACGGCGGACAGAAAGAGGTTGCGGCAAATGTCAAAGCCGC
AATGAAAGCACGAAGGAAAAAGGCTCTGGCGGAAGAGAATGAGAAGCAGG
CTAAAAAAGAAGGGGGAATAAAGTGGATGCCGCTCCTCTTTCTGCTGTTC
ATGATGGGGCCTGCGATCTTCACGGCGTTTGACTACCTGTTCCAGCTTCC
TATGTTTGCTCGCTTTCATCGCAAACCAGACATGCGTCAGTGTTTAACCA
ATTACTACCGCAAGGTGAGCCCCGACCGCTTGAGCGAAGTGAATGTGGAC
GATATTTTGCGAAAATACAAGGGGCGAGAATCCACGATGATCAGGAATTT
GGAAAACCGCTATCGCCGGAAATGGCAGTGTCCTTGAAAAGAAGCGCGGA
GAAGCAGACAAATAGGGGTGGGAAGGGAAGAAAAACAGAGCGGCGAGAAA
TTTGTGTTTTCTCTTTCTTCTCCAACTTCTTCTTTCTTGTTTGTACACAA
ATTCAAATCTGCTGGACGAATGTGTGGGCTTTGGAACATAAGACATGACG
GGCTGCAAGAGAGCGCAGTTTAGGATTTGAGCAATCATTAAATTCGAAAA
GCAGAAAACTCAATCATGGTCCGGCATTTATGCATCGGGATAGATAGCTT
TCTACCTGCGTTTAGCATCGCGTTTGAGATCTGACAGAGAAAACAAGTGC
GATCTTGCTAATGGGAATTTCAGTCATATTTCAAGTATTTGTTGGCAACC
TGCTTTCTTGATCCAGCCACTCCTTTGCCGACCAGCCACTGCGTAAACCT
ATTCTTATCGAAAGGATTTCTCAGAGTAATCGCAGCTTAGTCTTCAGTAC
TTTAGTGTGTCTTTTGTAAGCTGGATCGGCCCATGACAAAAAACTTCAAC
CTCCTCCCACTGCTGTTCCTGACCCGATGCTTATGTGGGTAGGGTGCACC
ATTACCCGTTGTGGTTCTAATGTTCCCGAAACCACAAAAAAAAGATAATA
TAATGGCCTCCGTGGATTTGATCTCCGGCTTGTACGGGGTTCTCCTAGCG
TTTGGAATCATGCTGCTTGCCGTTCTCCTCCTCCCTCTCGTCGTCTACCT
GATCAGCCGAAAGCCTTATCCCACTCTCAAAACATTGAGCAGCACTAAAA
CCCTCGGCGGTGTTCTCGTCACTGGAGCTTCTACAGGTATTGGCCGACAC
GCTGCATTTTATTTGGCTAGACAAGGCTTTTTAGTCTTCGCAGGGGTGCG
GAAACCTGCAGATGGCGAAGCACTCTTGAGAGCTTACCTAGATGAAGAAA
GCAAACAAACAAGTAAAAGCCGCAGCCGGGGCAAGGTATCCCCGGCAAAA
CAAGGCGTCTTACACTTCCTCATTTTAGACATCACCAAACCTTTTCAAAT
CGCCGCTGCCGTGCGGAGTGTTCAGGAGGAATTAAGTCGGAGGGGCGGCC
TCCCTTTCTTGGGCCTCGTGAATAATGCTGGCGTCACAGGCGGGGCCGAT
CCCGTCGAATTTCTTCCGCTAGAGCACAATCGAAATACCTTTGAGGTCAA
TTTTTACGGACCCTTAGCGGTCACTCAAGCTTTTTTGCCCCTGCTTCGCC
AAGCTCCACAAGGCAGGATCGTCAACGTCAGTAGCATGGCTGGCATTGTC
ACTCGACCCCTAGGAGCTACGTATTCCTGCACAAAATTCGCCTTAGAGGC
TTTAAGTGATACACTTAGGGTAGAGCTAGGACATTTGGGGGTGTCTGTAT
CTGTCATTCAGCCTGGGTATATCCGCAGTGAAATCTTCGGGAAAGCGGAC
GAACAGCACCAACATCGCATGCAAGAGCTCCCAGTGGAATGCAGCGCCCT
CTATGGACATTTGTACACGGTCGATAAAACGAATGCGCTTATTGCTAAAG
CTTCCGACCCCATTGTCTGCTCTCGCGCGATTCACCACGCGTTGACAAGT
CCTTACCCAAAGACCAGATATTTGGTAGGAAATGTGAACGGCACGCCTGC
TTACTGGCTAGGATGGGGCATTTGGCTTCTAAACGATCGGTTGATGGACC
GCATGATTACGCCGCCATTCAAGAAAGGGGCCCTTTGAAGACTCAATCAG
AGGCAGGAGGACGAGGGAGCGAGAAAGTGAAACGAGGCATGTGGAGGACT
GTCAGCCACCACAAGAGGACTGACCGGTTGCAAGTAAATTAGGAAACGGA
GATGGAGTACAAGATAATGCTAGAATATATCATCTATAAAATGCTTGGCA
GTACGCGGAGCTAGTGCCCGCGGTACTTCATTCGAAATATTGTTTCCTCG
TGTGCAGTTGAGAAGGCCATGCACAGTCATGACCCGATAATGTGTGCACA
TAGAGAAATTGCATATTCTTC back to topprotein sequence of rna1700 >rna1700-protein ID=rna1700-protein|Name=rna1700|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MFPKPQKKDNIMASVDLISGLYGVLLAFGIMLLAVLLLPLVVYLISRKPY
PTLKTLSSTKTLGGVLVTGASTGIGRHAAFYLARQGFLVFAGVRKPADGE
ALLRAYLDEESKQTSKSRSRGKVSPAKQGVLHFLILDITKPFQIAAAVRS
VQEELSRRGGLPFLGLVNNAGVTGGADPVEFLPLEHNRNTFEVNFYGPLA
VTQAFLPLLRQAPQGRIVNVSSMAGIVTRPLGATYSCTKFALEALSDTLR
VELGHLGVSVSVIQPGYIRSEIFGKADEQHQHRMQELPVECSALYGHLYT
VDKTNALIAKASDPIVCSRAIHHALTSPYPKVSLLWIRRACGRRSSCFRI
YPQERFY back to topmRNA from alignment at CM002457.1:1283821..1286920- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1700 ID=rna1700|Name=rna1700|organism=Nannochloropsis gaditana|type=mRNA|length=3100bp|location=Sequence derived from alignment at CM002457.1:1283821..1286920- (Nannochloropsis gaditana)
AACTGAAACAAAAACAACACATAAGTATATCTTTAAGAAAGGCGGAAAAT
AAATGGCAAGTTGAAGCCTCGACGCGCGAGACTGCCGCAACCATCCCATC
TTGCCCTGCAAGAAAAGAACCACTTCCCAAGCACAAACTGGACTGACGAG
CAGTTCTTCATCATCATTTCTATCAAGACGTAGTGTTGAATGCTGCGGAA
AGTCGATTTAGTGGTCAAGAGCAAATGTTTAACCAAAGATGCATGGCTTA
GTGCCCCACTGAACACGACCCCCAACATGTCGCACAGGTCCTCTTACCCC
AAATCCTTTGGGTTCGGAAGGCCACGATACCTTTGCACCACCACCTTACG
GAGGGGGTTTGGCAAAGTCTCACTTTTCTACTGGACTTACTATCCATCCC
CTCACAGCCGGCGTAAACCATGGTCTCCCCTGACATCCGTCAACGCAAAC
CGGGCCTTGCGGCATCTGAGGCGGACGACGTGGTCGTGGACGATGGAGAG
AGCGAAGAGGAGGTGGAGTACGAAGACGAGCCAGACGAACAGGAGATGAG
TGCGTTGGATTATTTGCACTCACAGGGATTATCCTTGAAGTCACTGAAAG
ATCCTTCCAAGGCCAAGACGGGAGCCACATGTCGTGCCGAGGGAAGCAGC
AGGGACAAGGACGGCGGACAGAAAGAGGTTGCGGCAAATGTCAAAGCCGC
AATGAAAGCACGAAGGAAAAAGGCTCTGGCGGAAGAGAATGAGAAGCAGG
CTAAAAAAGAAGGGGGAATAAAGTGGATGCCGCTCCTCTTTCTGCTGGTA
AGTGTCCTCACCTAGATAGAGAAAGGCTATTCTCGACGAACCCGTTGCGA
GCAACTCCTCTTTTCTTGTTTACACTCAACCAGTTCATGATGGGGCCTGC
GATCTTCACGGCGTTTGACTACCTGTTCCAGCTTCCTATGTTTGCTCGCT
TTCATCGCAAACCAGACATGCGTCAGTGTTTAACCAATTACTACCGCAAG
GTAAAGCTTGAAATGGAGGGAAATGTCAAGAGAATGATGGAGGCATGGAT
AGCTGGACCCTGAATTCCTTGGAAGGAGTGCCGCTGGATGATTTATAAGG
CCCTTTGACGACCTATAACGCCCTTGCTTCCCTGTTCACTATGTTTCCGT
TCCAGGTGAGCCCCGACCGCTTGAGCGAAGTGAATGTGGACGATATTTTG
CGAAAATACAAGGGGCGAGAATCCACGATGATCAGGAATTTGGAAAACCG
CTATCGCCGGAAATGGCAGTGTCCTTGAAAAGAAGCGCGGAGAAGCAGAC
AAATAGGGGTGGGAAGGGAAGAAAAACAGAGCGGCGAGAAATTTGTGTTT
TCTCTTTCTTCTCCAACTTCTTCTTTCTTGTTTGTACACAAATTCAAATC
TGCTGGACGAATGTGTGGGCTTTGGAACATAAGACATGACGGGCTGCAAG
AGAGCGCAGTTTAGGATTTGAGCAATCATTAAATTCGAAAAGCAGAAAAC
TCAATCATGGTCCGGCATTTATGCATCGGGATAGATAGCTTTCTACCTGC
GTTTAGCATCGCGTTTGAGATCTGACAGAGAAAACAAGTGCGATCTTGCT
AATGGGAATTTCAGTCATATTTCAAGTATTTGTTGGCAACCTGCTTTCTT
GATCCAGCCACTCCTTTGCCGACCAGCCACTGCGTAAACCTATTCTTATC
GAAAGGATTTCTCAGAGTAATCGCAGCTTAGTCTTCAGTACTTTAGTGTG
TCTTTTGTAAGCTGGATCGGCCCATGACAAAAAACTTCAACCTCCTCCCA
CTGCTGTTCCTGACCCGATGCTTATGTGGGTAGGGTGCACCATTACCCGT
TGTGGTTCTAATGTTCCCGAAACCACAAAAAAAAGATAATATAATGGCCT
CCGTGGATTTGATCTCCGGCTTGTACGGGGTTCTCCTAGCGTTTGGAATC
ATGCTGCTTGCCGTTCTCCTCCTCCCTCTCGTCGTCTACCTGATCAGCCG
AAAGCCTTATCCCACTCTCAAAACATTGAGCAGCACTAAAACCCTCGGCG
GTGTTCTCGTCACTGGAGCTTCTACAGGTATTGGCCGACACGCTGCATTT
TATTTGGCTAGACAAGGCTTTTTAGTCTTCGCAGGGGTGCGGAAACCTGC
AGATGGCGAAGCACTCTTGAGAGCTTACCTAGATGAAGAAAGCAAACAAA
CAAGTAAAAGCCGCAGCCGGGGCAAGGTATCCCCGGCAAAACAAGGCGTC
TTACACTTCCTCATTTTAGACATCACCAAACCTTTTCAAATCGCCGCTGC
CGTGCGGAGTGTTCAGGAGGAATTAAGTCGGAGGGGCGGCCTCCCTTTCT
TGGGCCTCGTGAATAATGCTGGCGTCACAGGCGGGGCCGATCCCGTCGAA
TTTCTTCCGCTAGAGCACAATCGAAATACCTTTGAGGTCAATTTTTACGG
ACCCTTAGCGGTCACTCAAGCTTTTTTGCCCCTGCTTCGCCAAGCTCCAC
AAGGCAGGATCGTCAACGTCAGTAGCATGGCTGGCATTGTCACTCGACCC
CTAGGAGCTACGTATTCCTGCACAAAATTCGCCTTAGAGGCTTTAAGTGA
TACACTTAGGGTAGAGCTAGGACATTTGGGGGTGTCTGTATCTGTCATTC
AGCCTGGGTATATCCGCAGTGAAATCTTCGGGAAAGCGGACGAACAGCAC
CAACATCGCATGCAAGAGCTCCCAGTGGAATGCAGCGCCCTCTATGGACA
TTTGTACACGGTCGATAAAACGAATGCGCTTATTGCTAAAGCTTCCGACC
CCATTGTCTGCTCTCGCGCGATTCACCACGCGTTGACAAGTCCTTACCCA
AAGGTAAGTCTTCTTTGGATTCGGAGAGCTTGCGGTAGACGAAGCTCTTG
TTTTAGGATCTATCCACAAGAAAGGTTTTACTGACATGCCATATGCTCAC
GGGCGCGAACAAAAGGCCGGCGGAGAATCGTTATCTTGTCATTAATTGCC
CACTATTCTGTTTAATTTTGGGTGCAAGTTGACAGGCAGCCCACTTTGTT
GGATTTTAGTCGGGTCCAGTCGATTGGAAAAGGGCACATGTCACCCCTCG
back to topCoding sequence (CDS) from alignment at CM002457.1:1283821..1286920- >rna1700 ID=rna1700|Name=rna1700|organism=Nannochloropsis gaditana|type=CDS|length=1074bp|location=Sequence derived from alignment at CM002457.1:1283821..1286920- (Nannochloropsis gaditana)
ATGTTCCCGAAACCACAAAAAAAAGATAATATAATGGCCTCCGTGGATTT
GATCTCCGGCTTGTACGGGGTTCTCCTAGCGTTTGGAATCATGCTGCTTG
CCGTTCTCCTCCTCCCTCTCGTCGTCTACCTGATCAGCCGAAAGCCTTAT
CCCACTCTCAAAACATTGAGCAGCACTAAAACCCTCGGCGGTGTTCTCGT
CACTGGAGCTTCTACAGGTATTGGCCGACACGCTGCATTTTATTTGGCTA
GACAAGGCTTTTTAGTCTTCGCAGGGGTGCGGAAACCTGCAGATGGCGAA
GCACTCTTGAGAGCTTACCTAGATGAAGAAAGCAAACAAACAAGTAAAAG
CCGCAGCCGGGGCAAGGTATCCCCGGCAAAACAAGGCGTCTTACACTTCC
TCATTTTAGACATCACCAAACCTTTTCAAATCGCCGCTGCCGTGCGGAGT
GTTCAGGAGGAATTAAGTCGGAGGGGCGGCCTCCCTTTCTTGGGCCTCGT
GAATAATGCTGGCGTCACAGGCGGGGCCGATCCCGTCGAATTTCTTCCGC
TAGAGCACAATCGAAATACCTTTGAGGTCAATTTTTACGGACCCTTAGCG
GTCACTCAAGCTTTTTTGCCCCTGCTTCGCCAAGCTCCACAAGGCAGGAT
CGTCAACGTCAGTAGCATGGCTGGCATTGTCACTCGACCCCTAGGAGCTA
CGTATTCCTGCACAAAATTCGCCTTAGAGGCTTTAAGTGATACACTTAGG
GTAGAGCTAGGACATTTGGGGGTGTCTGTATCTGTCATTCAGCCTGGGTA
TATCCGCAGTGAAATCTTCGGGAAAGCGGACGAACAGCACCAACATCGCA
TGCAAGAGCTCCCAGTGGAATGCAGCGCCCTCTATGGACATTTGTACACG
GTCGATAAAACGAATGCGCTTATTGCTAAAGCTTCCGACCCCATTGTCTG
CTCTCGCGCGATTCACCACGCGTTGACAAGTCCTTACCCAAAGGTAAGTC
TTCTTTGGATTCGGAGAGCTTGCGGTAGACGAAGCTCTTGTTTTAGGATC
TATCCACAAGAAAGGTTTTACTGA back to top
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