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Properties
| Property Name | Value |
|---|
| Product | nucleotide sugar transporter family protein |
| Orig transcript id | gnl|cribi|Naga_100007g15.6444.mrna |
| Orig protein id | gnl|cribi|Naga_100007g15.6444 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:930193..931900 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1559 ID=rna1559|Name=rna1559|organism=Nannochloropsis gaditana|type=mRNA|length=1910bp
TGACGGGAAAAGGTCAAGAGGATCCATAATGATGGAAGTCACATGTGCTC
ATGTTTTCACGGAAAGAAAGCATGATCAGGCGTGATAAAGGCAAAGCGCA
GGCGCGCCTGCGGGAACTTCTACGCCGACGAGGCTCCTTCTTCTGATTGG
CGCATTTGAAAAACCTAGGGCATTTTTGGATGCATGCGCCTAGCTTTTTC
AACGACGTTTTAGCGAACAGTTATTGACGGACACAATCGCATACATAAAT
ACAGGTAGGGGCTGGCGCAAGTGGTTGACACTACCTCGTTTCATCGCCTG
TTGTAGCGTACGGGGCTGCAGCGTTGTCATACTATCGTGTGAAAAGTTCG
TGCACCCCGCATCGAGCACTAAAAGTTGTGATTTCAAATTAAACAATAAT
CGAAAAGATGTTGGATATGACGACAATATTCGCCATGTTCGGCAACGTGG
GCTCTGTCGTGGGTGTGGTGATCATGAACAAGTACATCGTCGCCGTCGAC
GCCTTCAATTTCATGATCTTCCTCTCCTTCACCCACTTCGTCTTCACCTA
CCTGGGGTGCTCCGTCCTCCTCCACCTCGGATTCTTCAACTACAAACCGG
CCCCTATCCGCGGCGTCCTCCCCGTAGCCCTGGGCTCCTTGGGCTCTGTC
GCCTTCATGAATTTGAATCTGGCGCATAATTCCGTTGGCTTCTACCAGCT
CTCTAAGCTAGCTTGCATCCCTGTGACGATCGCCCTTGAGCGTGCCTTCT
ATGGCAAAACAGTCCCAGGCCCCGTCCTTGTCACGCTGATTCCCATCACG
ATCGGGGTGGGCATCGCGACCGTGAACGACGTGAGCGTCAACCTAGTGGG
TACCGCCTTCGCCGCCCTGGCCGTCCTCTTCACCTCCCTGGCCCAAATCT
TCACATCCACCTACCAGAAGCAGCTGGACTGCGACGCCCTCCAGCTCCTC
TACCACTCGTCGCCCCTCATCGCGGCCGGCTCCTTCCTCATGATCCCTTT
CTTCGACAACGTCCGCTACCTGGTCCAGACCTCAATCTCCCTCTCCCTCC
TCAACCACGTCCTCTCCTCCTGCGTCCTCGCCCTGGGCGTCAACATCTCC
AACTACCTAGTGCTAGGCAAGACGTCTCCCCTCACCTACCAGGTGCTGGG
GCACCTCAAGACCATCCTCATTTTGGTGCTTGGCTTCGTGGTGTTCAAGT
ACAAGTCCAACGCCCGCGCCGTCGTCGGCATCCTGATCGCCTTGGGCGGC
GTCATTGCCTACACCGAGTTGAAGCGCCGGATGTCTCTGCAGCAAGGCGG
TAGGGCTGGAATGAGCAGCAGTCACAGCGGGCTACGGAGGGGCTTTGAGG
GCCTGTCCTACAGTAAGGTGGCGGCCGACGAGGAAATCCCCGACGGCGAG
ATAGGTGGCGCCGGTCGGTTGGAGCTGATGGGCGCGATGAAGGTGTGAGG
AGGATGAGGAAGCGCCGGCGGAGGCTGTAGGGGTCCGTAAAGTACCTGCC
GTGTGGCCCGGGAGGCGGCCCACGGGACCATGGACTCGGAAGGGCGGATG
GCGCGGATGGAGGCTACCGGATGCACCGTGTATTGCGGCCATGGGCCGTG
AGCAAAAAGTATGAAGAAAGGGAAGAATGCCGGAGACCCGGTGGGTGGAG
TGGGGGGCAGAAGGGGCGCGACGCCTCGCGCAGGCCTCGAACAGAGTCTG
TAATGTACGACGTAATAGCGAATTTAGAGCCCAAGTCGGCAAGTCATGCT
AGCTTGCTTGTAGTGGCTTGTCGTTGAGCGCGCGGCGAAGGATAAGAAAC
AGGCGCGAGGAAGAAATTGGTACGAAAAAGCGTAGAAGCACGAGAAACTG
AACGATCCTTTCCGACGCTTTAACACGCGACAGAAATTATTTTAACGACA
ATGTTTCTCT back to topprotein sequence of rna1559 >rna1559-protein ID=rna1559-protein|Name=rna1559|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MRGAAGWDDILQHRRADSLDLSCSPPPSLMITLTRLLSLATLPTITQMLD
MTTIFAMFGNVGSVVGVVIMNKYIVAVDAFNFMIFLSFTHFVFTYLGCSV
LLHLGFFNYKPAPIRGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSKLAC
IPVTIALERAFYGKTVPGPVLVTLIPITIGVGIATVNDVSVNLVGTAFAA
LAVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIAAGSFLMIPFFDNVR
YLVQTSISLSLLNHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHLKTI
LILVLGFVVFKYKSNARAVVGILIALGGVIAYTELKRRMSLQQGGRAGMS
SSHSGLRRGFEGLSYSKVAADEEIPDGEIGGAGRLELMGAMKV back to topmRNA from alignment at CM002457.1:930193..931900+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1559 ID=rna1559|Name=rna1559|organism=Nannochloropsis gaditana|type=mRNA|length=1708bp|location=Sequence derived from alignment at CM002457.1:930193..931900+ (Nannochloropsis gaditana)
AATGGCTGAAATAGAGCCAGCAAAGATGCTCTAACTATAGCTTCATATAA
AATTATGAAGTGTCATGCGCGGGGCCGCTGGCTGGGATGATATACTTCAG
CATCGGCGTGCAGATTCACTCGATCTCTCTTGCAGCCCGCCACCTAGCCT
CATGATTACACTCACCAGACTActctccctcgccacttTACCTACCATCA
CTCAGATGTTGGATATGACGACAATATTCGCCATGTTCGGCAACGTGGGC
TCTGTCGTGGGTGTGGTGATCATGAACAAGTACATCGTCGCCGTCGACGC
CTTCAATTTCAtgatcttcctctccttcacccACTTCGTCTTCACCTACC
TGGGgtgctccgtcctcctccacctcggatTCTTCAACTACAAACCGGCC
CCTATCcgcggcgtcctccccgtaGCCCTGGGCTCCTTGGGCTCTGTCGC
CTTCATGAATTTGAATCTGGCGCATAATTCCGTTGGCTTCTACCAGCTCT
CTAAGCTAGCTTGCATCCCTGTGACGATCGCCCTTGAGCGTGCCTTCTAT
GGCAAAACAGTCCCAGGCCCCGTCCTTGTCACGCTGATTCCCATCACGAT
CGGGGTGGGCATCGCGACCGTGAACGACGTGAGCGTCAACCTAGTGGGTA
CCGCCTtcgccgccctggccgtcctcttcacctccctgGCCCAAATCTTC
ACATCCACCTACCAGAAGCAGCTGGACTGCGAcgccctccagctcctcta
CCACTCGTCGCCCCTCATCGCGGCCGGCTCCTTCCTCATGATCCCTTTCT
TCGACAACGTCCGCTACCTGGTCCAGACCTCaatctccctctccctcctc
aaccacgtcctctcctcctgcgtcctcgCCCTGGGCGTCAACATCTCCAA
CTACCTAGTGCTAGGCAAGACGTCTCCCCTCACCTACCAGGTGCTGGGGC
ACCTCAAGACCATCCTCATTTTGGTGCTTGGCTTCGTGGTGTTCAAGTAC
AAGTCCAACGCCCGCGCCGTCGTCGGCATCCTGATCGCCTTGGGCGGCGT
CATTGCCTACACCGAGTTGAAGCGCCGGATGTCTCTGCAGCAAGGCGGTA
GGGCTGGAATGAGCAGCAGTCACAGCGGGCTACGGAGGGGCTTTGAGGGC
CTGTCCTACAGTAAGGTGGCGGCCGACGAGGAAATCCCCGACGGCGAGAT
AGGTGGCGCCGGTCGGTTGGAGCTGATGGGCGCGATGAAGgtgtgaggag
gatgaggaagcgCCGGCGGAGGCTGTAGGGGTCCGTAAAGTACCTGCCGT
GTGGCCCGGGAGGCGGCCCACGGGACCATGGACTCGGAAGGGCGGATGGC
GCGGATGGAGGCTACCGGATGCACCGTGTATTGCGGCCATGGGCCGTGAG
CAAAAAGTatgaagaaagggaagaatgCCGGAGACCCGGTGGGTGGAGTG
GGGGGCAGAAGGGGCGCGACGCCTCGCGCAGGCCTCGAACAGAGTCTGTA
ATGTACGACGTAATAGCGAATTTAGAGCCCAAGTCGGCAAGTCATGCTAG
CTTGCTTGTAGTGGCTTGTCGTTGAGCGCGCGGCGAAGGATAAGAAACAG
GCGCGAGGAAGAAATTGGTACGAAAAAGCGTAGAAGCACGAGAAACTGAA
CGATCCTTTCCGACGCTTTAACACGCGACAGAAATTATTTTAACGACAAT
GTTTCTCT back to topCoding sequence (CDS) from alignment at CM002457.1:930193..931900+ >rna1559 ID=rna1559|Name=rna1559|organism=Nannochloropsis gaditana|type=CDS|length=1182bp|location=Sequence derived from alignment at CM002457.1:930193..931900+ (Nannochloropsis gaditana)
ATGCGCGGGGCCGCTGGCTGGGATGATATACTTCAGCATCGGCGTGCAGA
TTCACTCGATCTCTCTTGCAGCCCGCCACCTAGCCTCATGATTACACTCA
CCAGACTActctccctcgccacttTACCTACCATCACTCAGATGTTGGAT
ATGACGACAATATTCGCCATGTTCGGCAACGTGGGCTCTGTCGTGGGTGT
GGTGATCATGAACAAGTACATCGTCGCCGTCGACGCCTTCAATTTCAtga
tcttcctctccttcacccACTTCGTCTTCACCTACCTGGGgtgctccgtc
ctcctccacctcggatTCTTCAACTACAAACCGGCCCCTATCcgcggcgt
cctccccgtaGCCCTGGGCTCCTTGGGCTCTGTCGCCTTCATGAATTTGA
ATCTGGCGCATAATTCCGTTGGCTTCTACCAGCTCTCTAAGCTAGCTTGC
ATCCCTGTGACGATCGCCCTTGAGCGTGCCTTCTATGGCAAAACAGTCCC
AGGCCCCGTCCTTGTCACGCTGATTCCCATCACGATCGGGGTGGGCATCG
CGACCGTGAACGACGTGAGCGTCAACCTAGTGGGTACCGCCTtcgccgcc
ctggccgtcctcttcacctccctgGCCCAAATCTTCACATCCACCTACCA
GAAGCAGCTGGACTGCGAcgccctccagctcctctaCCACTCGTCGCCCC
TCATCGCGGCCGGCTCCTTCCTCATGATCCCTTTCTTCGACAACGTCCGC
TACCTGGTCCAGACCTCaatctccctctccctcctcaaccacgtcctctc
ctcctgcgtcctcgCCCTGGGCGTCAACATCTCCAACTACCTAGTGCTAG
GCAAGACGTCTCCCCTCACCTACCAGGTGCTGGGGCACCTCAAGACCATC
CTCATTTTGGTGCTTGGCTTCGTGGTGTTCAAGTACAAGTCCAACGCCCG
CGCCGTCGTCGGCATCCTGATCGCCTTGGGCGGCGTCATTGCCTACACCG
AGTTGAAGCGCCGGATGTCTCTGCAGCAAGGCGGTAGGGCTGGAATGAGC
AGCAGTCACAGCGGGCTACGGAGGGGCTTTGAGGGCCTGTCCTACAGTAA
GGTGGCGGCCGACGAGGAAATCCCCGACGGCGAGATAGGTGGCGCCGGTC
GGTTGGAGCTGATGGGCGCGATGAAGgtgtga back to top
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