rna1471, rna1471 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1471
Unique Name	rna1471
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1854
Alignment location	CM002457.1:715471..717556 +

Link to JBrowse

Properties


Property Name	Value
Product	sec14 cytosolic factor
Orig transcript id	gnl\|cribi\|Naga_100007g111.6499.mrna
Orig protein id	gnl\|cribi\|Naga_100007g111.6499
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:715471..717556 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g111	gene1420	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1471	rna1471-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29172.1	cds1468	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:715471..717556+
coding sequence from alignment at CM002457.1:715471..717556+

mRNA sequence

>rna1471 ID=rna1471|Name=rna1471|organism=Nannochloropsis gaditana|type=mRNA|length=1854bp
TGAAGGGCTTCGTAAGCCAAATCAAGACATTGATGCATTGATACGCTTTA
CTGAAGTTTGTGCGTTGAAACGCCGTTCTCCTAGAAGGTTTCCTCACTGA
AGTACGTGCCAGAAGCGCGCGGAACACTCGCTGCTGGAAGGCGGGAGCTG
ATCAAGAGGTTTGTCGGGCGTCTACAAGTTGTCAGCAAGCTGGTTACAAA
CTTTGAGGCGTGGATTATCTTCTAACCGTGCGTTGATAGAATGGTCGGAC
GAGCACGCTGCGCTCTTTTGATGCTATATTATCCTTCGTCACTCATTGAA
ATCGCGCTACACAAGGACCAAATAACATCAGGGATGGTAGATTTCTCGCC
GTTGTAAGGATTAGAGGAAGCGGTCTCTAGATTCCGCGACACGTATGGAG
CGACAACGAGATATTCTGGAGTGTCAATACAATCAGGAAAAATTTCGAGA
GAGGGGTCAACAGGCAGACCAACAATCGGCTTTGGTGGATGCGACGCAGA
GCATTGATGTTGTACCCTCCTACGTAGGAGGCCGCCAACCCCTTCCTGAA
GAACTTCAGCTCATGGCTGAATTTCAACGCGTCTTAGATAGCGCAAATGT
CATACTACCTCGCAAGTAAGTGGAGGTATTCCTACCTCTAGTTGACCACA
TCTCACTTGTGCGAAGGTGATCGGCAGAGCGTCTGGATCTCACTGTTGAG
AAGTGAATCAACCAGCCCGTGCATCGTATATGAGCAGCTCAATTTTCAAA
ATAGAATTGAAGCTTTGTGAGGATTTGAATTAGTACTTGTCCCTCTCATT
GTATGTATTATACGAATTTGACTTAATACCAAAAAAATTCTATGAGGAAA
TCCATTTCTCTAAAAGTCAAACATCCGTATCGAAAGGAGTTCTTATCATC
AATCGTTCTATTATCACAACTGAACAGTTTTTGGGAAGCTAACTACCACG
AGTCCCGATGCTCCCTCTTCTGGCGCTTTTTAGTTGCAAACGATGGACAC
GTGATACGTGCCAAAAACCAACTCGCGCGAGATGTTGCCTGGAGGGATGA
AATCAGGTTGAAAGACTTGCAGAACATGGCGCGAAAAGATGTAGTGGGGA
TTGAAGACGCATTTTTCATACGTCATTATCCTTGCCTCTGTCTGGGGTTT
GAGGATGGGAGTGAAAATTATTCGCCAGTCGTCTACAGACGCTTGACGCA
CTTAAACACAAAAGTGCTTGCGGAGAAGGGGGTGACAGTCGAGAAAATGA
TAAAGCATGAGCTATGGCAATATGAAAAAGACTGTCGCCTTTTATTCGAA
CATCCAGAAAGCTTTCCTCCTCGGCAACTGAAGGTCATTATCGACATTTC
AGGAATGACGTGGGCACAATGTACAAAAGATCTGATAAGCATCCTTTCCG
GATTTTCTTCCTTTAGTAAAGTGCATCATCCCGAACGCCTGCAAAAGTTG
TACATTATTGGTGCTCCAAAACCATTCTCTTTTGTATGGAATACCATCGT
CTCTCGTATTATCCCCGAGAGGACCAGAAATAAGATTATGATTTTGCATT
CCATTCAAGGCAATACATGGCTCGAAAAGTGGATGAAAATGTGTCCGTCT
TTGGAGTAACTAATTTTTTTTTCGCACGAGTAATGCAATTTGTTCTACCG
TGGGCGGCCGTAAATGGAACATTTCAGTCTGTAAGCGCTAACGCCAGTAC
GAGGGAAGTAATCTTTGAGTGACATGCCATACCCAAAACGTTGTGCAGGT
TTTGATTTAGGCGTACTCAAATCAGAAAAATCAACTACTCTAAAACTCAC
CTCGACATCACCAGAGCTCACGAGAACTTTTGGGCCGATATCTGAATGCT
GATG

protein sequence of rna1471

>rna1471-protein ID=rna1471-protein|Name=rna1471|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPL
PEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVI
RAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFED
GSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHP
ESFPPRQLKVRIF

mRNA from alignment at CM002457.1:715471..717556+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1471 ID=rna1471|Name=rna1471|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp|location=Sequence derived from alignment at CM002457.1:715471..717556+ (Nannochloropsis gaditana)
TGAAGGGCTTCGTAAGCCAAATCAAGACATTGATGCATTGATACGCTTTA
CTGAAGTTTGTGCGTTGAAACGCCGTTCTCCTAGAAGGTTTCCTCACTGA
AGTACGTGCCAGAAGCGCGCGGAACACTCGCTGCTGGAAGGCGGGAGCTG
ATCAAGAGGTTTGTCGGGCGTCTACAAGTTGTCAGCAAGCTGGTTACAAA
CTTTGAGGCGTGGATTATCTTCTAACCGTGCGTTGATAGAATGGTCGGAC
GAGCACGCTGCGCTCTTTTGATGCTATATTATCCTTCGTCACTCATTGAA
ATCGCGCTACACAAGGACCAAATAACATCAGGGATGGTAGATTTCTCGCC
GTTGTAAGGATTAGAGGAAGCGGTCTCTAGATTCCGCGACACGTATGGAG
CGACAACGAGATATTCTGGAGTGTCAATACAATCAGGAAAAATTTCGAGA
GAGGGGTCAACAGGCAGACCAACAATCGGCTTTGGTGGATGCGACGCAGA
GCATTGATGTTGTACCCTCCTACGTAGGAGGCCGCCAACCCCTTCCTGAA
GAACTTCAGCTCATGGCTGAATTTCAACGCGTCTTAGATAGCGCAAATGT
CATACTACCTCGCAAGTAAGTGGAGGTATTCCTACCTCTAGTTGACCACA
TCTCACTTGTGCGAAGGTGATCGGCAGAGCGTCTGGATCTCACTGTTGAG
AAGTGAATCAACCAGCCCGTGCATCGTATATGAGCAGCTCAATTTTCAAA
ATAGAATTGAAGCTTTGTGAGGATTTGAATTAGTACTTGTCCCTCTCATT
GTATGTATTATACGAATTTGACTTAATACCAAAAAAATTCTATGAGGAAA
TCCATTTCTCTAAAAGTCAAACATCCGTATCGAAAGGAGTTCTTATCATC
AATCGTTCTATTATCACAACTGAACAGTTTTTGGGAAGCTAACTACCACG
AGTCCCGatgctccctcttctggcGCTTTTTAGTTGCAAACGATGGACAC
GTGATACGTGCCAAAAACCAACTCGCGCGAGATGTTGCCTGGAGGGATGA
AATCAGGTTGAAAGACTTGCAGAacatggcgcgaaaagaTGTAGTGGGGA
TTGAAGACGCATTTTTCATACGTCATTATCCTTGCCTCTGTCTGGGGTTT
GAGGATGGGAGTGAAAATTATTCGCCAGTCGTCTACAGACGCTTGACGCA
CTTAAACACAAAAGTGCTtgcggagaagggggtgaCAGTCGAGAAAATGA
TAAAGCATGAGCTATGGCAATATGAAAAAGACTGTCGCCTTTTATTCGAA
CATCCAGaaagctttcctcctcggcaacTGAAGGTGCGTATATTTTGAAT
GGATAGGTAGAGTCAAGAATTTTGTTAAACTTTTTAGCCAACTCATTTGG
AATGTCGGAACTATCTCGTACATCTGCGAATGTTGGCCACTTTTTGTAGA
CATAATATGCCAGTTGCCACTATCGCAAGCGTTCTTACATCACATTTTTG
CTGACGTGCACTGAAAAAGATCGTACTCGGTCCTTTCTCACACCTTTTTG
TCACATGCATACAAGGTCATTATCGACATTTCAGGAATGACGTGGGCACA
ATGTACAAAAGATCTGATAAGCATCCTTTCcggattttcttcctttaGTA
AAGTGCATCATCCCGAACGCCTGCAAAAGTTGTACATTATTGGTGCTCCA
AAACCATTCTCTTTTGTATGGAATACCATCGTCTCTCGTATTATCCCCGA
GAGGACCAGAAATAAGATTATGATTTTGCATTCCATTCAAGGCAATACAT
GGCTCGAAAAGTGGATGAAAATGTGTCCGTCTTTGGAGTAACTAATTTTT
TTTTCGCACGAGTAATGCAATTTGTTCTACCGTGGGCGGCCGTAAATGGA
ACATTTCAGTCTGTAAGCGCTAACGCCAGTACGAGGGAAGTAATCTTTGA
GTGACATGCCATACCCAAAACGTTGTGCAGGTTTTGATTTAGGCGTACTC
AAATCAGAAAAATCAACTACTCTAAAACTCACCTCGACATCACCAGAGCT
CACGAGAACTTTTGGGCCGATATCTGAATGCTGATG

Coding sequence (CDS) from alignment at CM002457.1:715471..717556+

>rna1471 ID=rna1471|Name=rna1471|organism=Nannochloropsis gaditana|type=CDS|length=1284bp|location=Sequence derived from alignment at CM002457.1:715471..717556+ (Nannochloropsis gaditana)
ATGGAGCGACAACGAGATATTCTGGAGTGTCAATACAATCAGGAAAAATT
TCGAGAGAGGGGTCAACAGGCAGACCAACAATCGGCTTTGGTGGATGCGA
CGCAGAGCATTGATGTTGTACCCTCCTACGTAGGAGGCCGCCAACCCCTT
CCTGAAGAACTTCAGCTCATGGCTGAATTTCAACGCGTCTTAGATAGCGC
AAATGTCATACTACCTCGCAATTTTTGGGAAGCTAACTACCACGAGTCCC
GatgctccctcttctggcGCTTTTTAGTTGCAAACGATGGACACGTGATA
CGTGCCAAAAACCAACTCGCGCGAGATGTTGCCTGGAGGGATGAAATCAG
GTTGAAAGACTTGCAGAacatggcgcgaaaagaTGTAGTGGGGATTGAAG
ACGCATTTTTCATACGTCATTATCCTTGCCTCTGTCTGGGGTTTGAGGAT
GGGAGTGAAAATTATTCGCCAGTCGTCTACAGACGCTTGACGCACTTAAA
CACAAAAGTGCTtgcggagaagggggtgaCAGTCGAGAAAATGATAAAGC
ATGAGCTATGGCAATATGAAAAAGACTGTCGCCTTTTATTCGAACATCCA
GaaagctttcctcctcggcaacTGAAGGTGCGTATATTTTGAATGGAGCG
ACAACGAGATATTCTGGAGTGTCAATACAATCAGGAAAAATTTCGAGAGA
GGGGTCAACAGGCAGACCAACAATCGGCTTTGGTGGATGCGACGCAGAGC
ATTGATGTTGTACCCTCCTACGTAGGAGGCCGCCAACCCCTTCCTGAAGA
ACTTCAGCTCATGGCTGAATTTCAACGCGTCTTAGATAGCGCAAATGTCA
TACTACCTCGCAATTTTTGGGAAGCTAACTACCACGAGTCCCGatgctcc
ctcttctggcGCTTTTTAGTTGCAAACGATGGACACGTGATACGTGCCAA
AAACCAACTCGCGCGAGATGTTGCCTGGAGGGATGAAATCAGGTTGAAAG
ACTTGCAGAacatggcgcgaaaagaTGTAGTGGGGATTGAAGACGCATTT
TTCATACGTCATTATCCTTGCCTCTGTCTGGGGTTTGAGGATGGGAGTGA
AAATTATTCGCCAGTCGTCTACAGACGCTTGACGCACTTAAACACAAAAG
TGCTtgcggagaagggggtgaCAGTCGAGAAAATGATAAAGCATGAGCTA
TGGCAATATGAAAAAGACTGTCGCCTTTTATTCGAACATCCAGaaagctt
tcctcctcggcaacTGAAGGTGCGTATATTTTGA

Synonyms

Publications