EWM29172.1, cds1468 (CDS) Nannochloropsis gaditana

Overview
NameEWM29172.1
Unique Namecds1468
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:715865..716085 +
Alignment locationCM002457.1:716398..716818 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29172.1
Productsec14 cytosolic factor
Orig transcript idgnl|cribi|Naga_100007g111.6499.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:715865..716085 +
CM002457.1supercontigCM002457.1:716398..716818 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
Homology
[Close]
BLAST of EWM29172.1 vs. NCBI_GenBank
Match: gi|585111692|gb|EWM29172.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 444.506 bits (1142), Expect = 4.266e-158
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 
Query:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVRIF 213
            MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVRIF
Sbjct:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVRIF 213
[Close]
BLAST of EWM29172.1 vs. NCBI_GenBank
Match: gi|585111691|gb|EWM29171.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 440.269 bits (1131), Expect = 4.939e-155
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0 
Query:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVRI 212
            MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKV I
Sbjct:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVII 212
[Close]
BLAST of EWM29172.1 vs. NCBI_GenBank
Match: gi|585111693|gb|EWM29173.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 295.049 bits (754), Expect = 2.735e-98
Identity = 141/162 (87.04%), Postives = 150/162 (92.59%), Query Frame = 0 
Query:   53 ELQLMAEFQRVLDSANVILPR--NFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVRI 212
             L++   +++   S+ V+L +  +FWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKV I
Sbjct:    6 SLKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVII 167
The following BLAST results are available for this feature:
BLAST of EWM29172.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111692|gb|EWM29172.1|4.266e-158100.00sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|585111691|gb|EWM29171.1|4.939e-15599.53sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|585111693|gb|EWM29173.1|2.735e-9887.04sec14 cytosolic factor [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1471rna1471Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications